-
1
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
10.1186/gb-2004-5-10-r80 545600 15461798
-
Gentleman RC Carey VJ Bates DM Bolstad B Dettling M Dudoit S Ellis B Gautier L Ge Y Gentry J et al Bioconductor: Open software development for computational biology and bioinformatics Genome Biol 2004, 5(10):R80. 10.1186/gb-2004-5-10-r80 545600 15461798
-
(2004)
Genome Biol
, vol.5
, Issue.10
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
-
3
-
-
13844275287
-
Microarray data mining with visual programming
-
10.1093/bioinformatics/bth474 15308546
-
Curk T Demsar J Xu Q Leban G Petrovic U Bratko I Shaulsky G Zupan B Microarray data mining with visual programming Bioinformatics 2005, 21(3):396-398. 10.1093/bioinformatics/bth474 15308546
-
(2005)
Bioinformatics
, vol.21
, Issue.3
, pp. 396-398
-
-
Curk, T.1
Demsar, J.2
Xu, Q.3
Leban, G.4
Petrovic, U.5
Bratko, I.6
Shaulsky, G.7
Zupan, B.8
-
4
-
-
28944435090
-
Microarray phenotyping in Dictyostelium reveals a regulon of chemotaxis genes
-
10.1093/bioinformatics/bti726 16234315
-
Booth EO Van Driessche N Zhuchenko O Kuspa A Shaulsky G Microarray phenotyping in Dictyostelium reveals a regulon of chemotaxis genes Bioinformatics 2005, 21(24):4371-4377. 10.1093/bioinformatics/bti726 16234315
-
(2005)
Bioinformatics
, vol.21
, Issue.24
, pp. 4371-4377
-
-
Booth, E.O.1
Van Driessche, N.2
Zhuchenko, O.3
Kuspa, A.4
Shaulsky, G.5
-
5
-
-
0038444692
-
TagA, a putative serine protease/ABC transporter of Dictyostelium that is required for cell fate determination at the onset of development
-
10.1242/dev.00523 12756178
-
Good JR Cabral M Sharma S Yang J Van Driessche N Shaw CA Shaulsky G Kuspa A TagA, a putative serine protease/ABC transporter of Dictyostelium that is required for cell fate determination at the onset of development Development 2003, 130(13):2953-2965. 10.1242/dev.00523 12756178
-
(2003)
Development
, vol.130
, Issue.13
, pp. 2953-2965
-
-
Good, J.R.1
Cabral, M.2
Sharma, S.3
Yang, J.4
Van Driessche, N.5
Shaw, C.A.6
Shaulsky, G.7
Kuspa, A.8
-
6
-
-
2342593128
-
An orderly retreat: Dedifferentiation is a regulated process
-
10.1073/pnas.0306983101 406456 15103019
-
Katoh M Shaw C Xu Q Van Driessche N Morio T Kuwayama H Obara S Urushihara H Tanaka Y Shaulsky G An orderly retreat: Dedifferentiation is a regulated process Proc Natl Acad Sci USA 2004, 101(18):7005-7010. 10.1073/pnas.0306983101 406456 15103019
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.18
, pp. 7005-7010
-
-
Katoh, M.1
Shaw, C.2
Xu, Q.3
Van Driessche, N.4
Morio, T.5
Kuwayama, H.6
Obara, S.7
Urushihara, H.8
Tanaka, Y.9
Shaulsky, G.10
-
7
-
-
0344925819
-
A cell-adhesion pathway regulates intercellular communication during Dictyostelium development
-
10.1016/j.ydbio.2003.08.025 14651934
-
Kibler K Svetz J Nguyen TL Shaw C Shaulsky G A cell-adhesion pathway regulates intercellular communication during Dictyostelium development Dev Biol 2003, 264(2):506-521. 10.1016/j.ydbio.2003.08.025 14651934
-
(2003)
Dev Biol
, vol.264
, Issue.2
, pp. 506-521
-
-
Kibler, K.1
Svetz, J.2
Nguyen, T.L.3
Shaw, C.4
Shaulsky, G.5
-
8
-
-
34248171722
-
MEK1 and protein phosphatase 4 coordinate Dictyostelium development and chemotaxis
-
10.1128/MCB.02194-06 1899987 17353263
-
Mendoza MC Booth EO Shaulsky G Firtel RA MEK1 and protein phosphatase 4 coordinate Dictyostelium development and chemotaxis Mol Cell Biol 2007, 27(10):3817-3827. 10.1128/MCB.02194-06 1899987 17353263
-
(2007)
Mol Cell Biol
, vol.27
, Issue.10
, pp. 3817-3827
-
-
Mendoza, M.C.1
Booth, E.O.2
Shaulsky, G.3
Firtel, R.A.4
-
9
-
-
34848920891
-
Global transcriptional responses to cisplatin in Dictyostelium discoideum identify potential drug targets
-
10.1073/pnas.0705996104 2000517 17878305
-
Van Driessche N Alexander H Min J Kuspa A Alexander S Shaulsky G Global transcriptional responses to cisplatin in Dictyostelium discoideum identify potential drug targets Proc Natl Acad Sci USA 2007, 104(39):15406-15411. 10.1073/pnas.0705996104 2000517 17878305
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.39
, pp. 15406-15411
-
-
Van Driessche, N.1
Alexander, H.2
Min, J.3
Kuspa, A.4
Alexander, S.5
Shaulsky, G.6
-
10
-
-
18144425479
-
Epistasis analysis with global transcriptional phenotypes
-
10.1038/ng1545 15821735
-
Van Driessche N Demsar J Booth EO Hill P Juvan P Zupan B Kuspa A Shaulsky G Epistasis analysis with global transcriptional phenotypes Nat Genet 2005, 37(5):471-477. 10.1038/ng1545 15821735
-
(2005)
Nat Genet
, vol.37
, Issue.5
, pp. 471-477
-
-
Van Driessche, N.1
Demsar, J.2
Booth, E.O.3
Hill, P.4
Juvan, P.5
Zupan, B.6
Kuspa, A.7
Shaulsky, G.8
-
11
-
-
0036336886
-
A transcriptional profile of multicellular development in Dictyostelium discoideum
-
11923193
-
Van Driessche N Shaw C Katoh M Morio T Sucgang R Ibarra M Kuwayama H Saito T Urushihara H Maeda M et al A transcriptional profile of multicellular development in Dictyostelium discoideum Development 2002, 129(7):1543-1552. 11923193
-
(2002)
Development
, vol.129
, Issue.7
, pp. 1543-1552
-
-
Van Driessche, N.1
Shaw, C.2
Katoh, M.3
Morio, T.4
Sucgang, R.5
Ibarra, M.6
Kuwayama, H.7
Saito, T.8
Urushihara, H.9
Maeda, M.10
-
12
-
-
6344291621
-
Transcriptional transitions during Dictyostelium spore germination
-
10.1128/EC.3.5.1101-1110.2004 522591 15470238
-
Xu Q Ibarra M Mahadeo D Shaw C Huang E Kuspa A Cotter D Shaulsky G Transcriptional transitions during Dictyostelium spore germination Eukaryot Cell 2004, 3(5):1101-1110. 10.1128/EC.3.5.1101-1110.2004 522591 15470238
-
(2004)
Eukaryot Cell
, vol.3
, Issue.5
, pp. 1101-1110
-
-
Xu, Q.1
Ibarra, M.2
Mahadeo, D.3
Shaw, C.4
Huang, E.5
Kuspa, A.6
Cotter, D.7
Shaulsky, G.8
-
13
-
-
41349116548
-
Biochemistry. A postgenomic visual icon
-
10.1126/science.1151888 18369130
-
Weinstein JN Biochemistry. A postgenomic visual icon Science 2008, 319(5871):1772-1773. 10.1126/science.1151888 18369130
-
(2008)
Science
, vol.319
, Issue.5871
, pp. 1772-1773
-
-
Weinstein, J.N.1
-
14
-
-
28444480655
-
GOAT: An R tool for analyzing Gene Ontology term enrichment
-
10.2165/00822942-200504040-00008 16309346
-
Xu Q Shaulsky G GOAT: An R tool for analyzing Gene Ontology term enrichment Applied Bioinformatics 2005, 4(4):281-283. 10.2165/ 00822942-200504040-00008 16309346
-
(2005)
Applied Bioinformatics
, vol.4
, Issue.4
, pp. 281-283
-
-
Xu, Q.1
Shaulsky, G.2
-
15
-
-
33644872577
-
Limma: Linear Models for Microarray Data
-
New York: Springer Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W
-
Smyth GK limma: Linear Models for Microarray Data Bioinformatics and Computational Biology Solutions Using R and Bioconductor New York: Springer Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W 2005, 397-420.
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
17
-
-
0003126516
-
Fast optimal leaf ordering for hierarchical clustering
-
11472989
-
Bar-Joseph Z Gifford DK Jaakkola TS Fast optimal leaf ordering for hierarchical clustering Bioinformatics 2001, 17(Suppl 1):S22-29. 11472989
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL. 1
-
-
Bar-Joseph, Z.1
Gifford, D.K.2
Jaakkola, T.S.3
-
18
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556 10802651
-
Ashburner M Ball CA Blake JA Botstein D Butler H Cherry JM Davis AP Dolinski K Dwight SS Eppig JT et al Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium Nat Genet 2000, 25(1):25-29. 10.1038/75556 10802651
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
|