The cyanobacterial cell division factor Ftn6 contains an N-terminal DnaD-like domain

BMC Structural Biology

Volumn 9, Issue , 2009, Pages

  Marbouty, Martial ^a   Saguez, Cyril ^a   Chauvat, Franck ^a  

^a DIF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; AMINO ACID; BACTERIAL PROTEIN; DNAD PROTEIN; FTN6 PROTEIN; UNCLASSIFIED DRUG; BACTERIAL DNA; DNA BINDING PROTEIN;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL CELL; CELL DIVISION; CYANOBACTERIUM; DNA REPLICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY; CHEMICAL STRUCTURE; CHEMISTRY; DNA DAMAGE; GENE DELETION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MICROBIAL VIABILITY; MOLECULAR GENETICS; PROTEIN TERTIARY STRUCTURE; RADIATION EXPOSURE; SEQUENCE ALIGNMENT; SYNECHOCYSTIS;

CYANOBACTERIA; SYNECHOCYSTIS SP.;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; DNA DAMAGE; DNA, BACTERIAL; DNA-BINDING PROTEINS; GENE DELETION; MICROBIAL VIABILITY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SYNECHOCYSTIS;

EID: 69949133987     PISSN: None     EISSN: 14726807     Source Type: Journal    
DOI: 10.1186/1472-6807-9-54     Document Type: Article

References (44)

1. The great divide: coordinating cell cycle events during bacterial growth and division. DP Haeusser PA Levin, Curr Opin Microbiol 2008 11 94 9 10.1016/j.mib.2008.02.008 18396093
2. The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication. W Messer, FEMS Microbiol Rev 2002 26 355 74 12413665
3. DnaA: controlling the initiation of bacterial DNA replication and more. JM Kaguni, Annu Rev Microbiol 2006 60 351 75 10.1146/annurev.micro.60.080805. 142111 16753031 (Pubitemid 44627953)
4. Protein - protein interactions in the eubacterial replisome. PM Schaeffer MJ Headlam NE Dixon, IUBMB Life 2005 57 5 12 10.1080/15216540500058956 16036556 (Pubitemid 40637695)
5. Control of DNA replication initiation by recruitment of an essential initiation protein to the membrane of Bacillus subtilis. ME Rokop JM Auchtung AD Grossman, Mol Microbiol 2004 52 1757 67 10.1111/j.1365-2958.2004.04091.x 15186423 (Pubitemid 38822683)
6. A functional interaction between the putative primosomal protein DnaI and the main replicative DNA helicase DnaB in Bacillus. P Soultanas, Nucleic Acids Res 2002 30 966 74 10.1093/nar/30.4.966 11842108
7. A two-protein strategy for the functional loading of a cellular replicative DNA helicase. M Velten S McGovern S Marsin SD Ehrlich P Noirot P Polard, Mol Cell 2003 11 1009 20 10.1016/S1097-2765(03)00130-8 12718886 (Pubitemid 36566322)
8. DnaD protein of Bacillus subtilis interacts with DnaA, the initiator protein of replication. D Ishigo-Oka N Ogasawara S Moriya, J Bacteriol 2001 183 2148 50 10.1128/JB.183.6.2148-2150.2001 11222620 (Pubitemid 32226016)
9. Functional interplay between the Bacillus subtilis DnaD and DnaB proteins essential for initiation and re-initiation of DNA replication. C Bruand M Velten S McGovern S Marsin C Sérèna SD Ehrlich P Polard, Mol Microbiol 2005 55 1138 50 10.1111/j.1365-2958.2004.04451.x 15686560 (Pubitemid 40299183)
10. Early steps of Bacillus subtilis primosome assembly. S Marsin S McGovern SD Ehrlich C Bruand P Polard, J Biol Chem 2001 276 45818 25 10.1074/jbc. M101996200 11585815
11. The Bacillus subtilis DnaD protein: a putative link between DNA remodeling and initiation of DNA replication. IJ Turner DJ Scott S Allen CJ Roberts P Soultanas, FEBS Lett 2004 577 460 4 10.1016/j.febslet.2004.10.051 15556628 (Pubitemid 39535331)
12. The Bacillus subtilis DnaD and DnaB proteins exhibit different DNA remodelling activities. W Zhang MJ Carneiro IJ Turner S Allen CJ Roberts P Soultanas, J Mol Biol 2005 351 66 75 10.1016/j.jmb.2005.05.065 16002087 (Pubitemid 40967055)
13. The Bacillus subtilis primosomal protein DnaD untwists supercoiled DNA. W Zhang S Allen CJ Roberts P Soultanas, J Bacteriol 2006 188 5487 93 10.1128/JB.00339-06 16855238 (Pubitemid 44157305)
14. The DNA-remodelling activity of DnaD is the sum of oligomerization and DNA-binding activities on separate domains. MJ Carneiro W Zhang C Ioannou DJ Scott S Allen CJ Roberts P Soultanas, Mol Microbiol 2006 60 917 24 10.1111/j.1365-2958.2006.05152.x 16677303
15. Single-molecule atomic force spectroscopy reveals that DnaD forms scaffolds and enhances duplex melting. W Zhang C Machn A Orta N Phillips CJ Roberts S Allen P Soultanas, J Mol Biol 2008 377 706 14 10.1016/j.jmb.2008.01. 067 18291414
16. Replication termination in Escherichia coli: structure and antihelicase activity of the Tus-Ter complex. C Neylon AV Kralicek TM Hill NE Dixon, Microbiol Mol Biol Rev 2005 69 501 26 10.1128/MMBR.69.3.501-526.2005 16148308 (Pubitemid 41306748)
17. Bacterial cell division: the mechanism and its precison. E Harry L Monahan L Thompson, Int Rev Cytol 2006 253 27 94 10.1016/S0074-7696(06)53002-5 17098054 (Pubitemid 46107114)
18. Assembly dynamics of the bacterial MinCDE system and spatial regulation of the Z ring. J Lutkenhaus, Annu Rev Biochem 2007 76 539 62 10.1146/annurev.biochem.75.103004.142652 17328675
19. A novel gene that bears a DnaJ motif influences cyanobacterial cell division. OA Koksharova CP Wolk, J Bacteriol 2002 184 5524 8 10.1128/JB.184.19.5524-5528.2002 12218043 (Pubitemid 35024402)
20. Molecular analysis of the key cytokinetic components of cyanobacteria: FtsZ, ZipN and MinCDE. K Mazouni F Domain C Cassier-Chauvat F Chauvat, Mol Microbiol 2004 52 1145 58 10.1111/j.1365-2958.2004.04042.x 15130131 (Pubitemid 38916180)
21. Identification of cyanobacterial cell division genes by comparative and mutational analyses. SY Miyagishima CP Wolk KW Osteryoung, Mol Microbiol 2005 56 126 43 10.1111/j.1365-2958.2005.04548.x 15773984 (Pubitemid 40461493)
22. WebLogo: a sequence logo generator. GE Crooks G Hon JM Chandonia SE Brenner, Genome Res 2004 14 1188 90 10.1101/gr.849004 15173120 (Pubitemid 38811555)
23. Protein structure modeling with MODELLER. N Eswar D Eramian B Webb MY Shen A Sali, Methods Mol Biol 2008 426 145 59 18542861 full-text
24. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. M Landau I Mayrose Y Rosenberg F Glaser E Martz T Pupko N Ben-Tal, Nucleic Acids Res 2005 33 W299 302 10.1093/nar/gki370 15980475 (Pubitemid 44529930)
25. Nucleotide sequence of the Bacillus subtilis dnaD gene. C Bruand A Sorokin P Serror SD Ehrlich, Microbiology 1995 141 321 322 10.1099/13500872-141- 2-321 7704260
26. Primosome assembly site in Bacillus subtilis. C Bruand SD Ehrlich L Jannière, EMBO J 1995 14 2642 2650 7781616
27. Control of initiation of sporulation by replication initiation genes in Bacillus subtilis. KP Lemon I Kurtser J Wu AD Grossman, J Bacteriol 2000 182 2989 2991 10.1128/JB.182.10.2989-2991.2000 10781575 (Pubitemid 30246937)
28. Identification of temperature-sensitive dnaD mutants of Staphylococcus aureus that are defective in chromosomal DNA replication. Y Li K Kurokawa M Matsuo N Fukuhara K Murakami K Sekimizu, Mol Genet Genomics 2004 271 447 457 10.1007/s00438-004-0996-6 15042355 (Pubitemid 38824038)
29. DnaB, DnaD and DnaI proteins are components of the Bacillus subtilis replication restart primosome. C Bruand M Farache S McGovern SD Ehrlich P Polard, Mol Microbiol 2001 42 245 255 10.1046/j.1365-2958.2001.02631.x 11679082 (Pubitemid 34212176)
30. Characterization of a novel non-specific nuclease from thermophilic bacteriophage GBSV1. Q Song X Zhang, BMC Biotechnol 2008 8 43 10.1186/1472-6750-8-43 18439318 (Pubitemid 351722548)
31. Comparative proteomics of cell division mutants and wild-type of Synechococcus sp. strain PCC 7942. OA Koksharova J Klint U Rasmussen, Microbiology 2007 153 2505 17 10.1099/mic.0.2007/007039-0 17660415 (Pubitemid 47262040)
32. Characterization of the FtsZ-interacting septal proteins SepF and Ftn6 in the spherical-celled cyanobacterium Synechocystis PCC6803. M Marbouty C Saguez C Cassier-Chauvat F Chauvat, J Bacteriol 2009 19648234
33. Basic local alignment search tool. SF Altschul W Gish W Miller EW Myers DJ Lipman, J Mol Biol 1990 215 403 10 2231712
34. BLAST and PsiBLAST at NCBI. http://blast.ncbi.nlm.nih.gov/Blast.cgi
35. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman, Nucleic Acids Res 1997 25 3389 402 10.1093/nar/25.17.3389 9254694 (Pubitemid 27359211)
36. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 4673 4680 10.1093/nar/22.22.4673 7984417
37. ClustalW2 server. EBI, http://www.ebi.ac.uk/Tools/clustalw2/index.html
38. Boxshade server. http://www.ch.embnet.org/software/BOX-form.html
39. Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre. RM Bennett-Lovsey AD Herbert MJ Sternberg LA Kelley, Proteins 2008 70 611 25 10.1002/prot.21688 17876813 (Pubitemid 351161924)
40. PHYRE server. http://www.sbg.bio.ic.ac.uk/phyre/
41. Pymol. http://www.pymol.org/
42. ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. M Wiederstein MJ Sippl, Nucleic Acids Res 2007 35 W407 10 10.1093/nar/gkm290 17517781
43. ProSA-web server. https://prosa.services.came.sbg.ac.at/prosa.php
44. Characterization of the Synechocystis PCC6803 penicillin-binding proteins and cytokinetic proteins FtsQ and FtsW, and their network of interactions with ZipN. M Marbouty K Mazouni C Saguez C Cassier-Chauvat F Chauvat, J Bacteriol 2009 191 5123 33 10.1128/JB.00620-09 19542290