The Bacillus subtilis DnaD protein: A putative link between DNA remodeling and initiation of DNA replication

FEBS Letters

Volumn 577, Issue 3, 2004, Pages 460-464

  Turner, Ian J ^a   Scott, David J ^a   Allen, Stephanie ^a   Roberts, Clive J ^a   Soultanas, Panos ^a  

^a UNIVERSITY OF NOTTINGHAM   (United Kingdom)

Author keywords

Atomic force microscopy; DNA replication; DnaD; Nucleoid

Indexed keywords

BACTERIAL PROTEIN; DNAD PROTEIN; HISTONE; HU PROTEIN; NUCLEOPROTEIN; PLASMID DNA; UNCLASSIFIED DRUG;

ARTICLE; BACILLUS SUBTILIS; DNA REPLICATION; ESCHERICHIA COLI; GRAM POSITIVE BACTERIUM; PRIORITY JOURNAL;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; CHROMATOGRAPHY, GEL; DNA HELICASES; DNA REPLICATION; DNA, BACTERIAL; DNA-BINDING PROTEINS; MICROSCOPY, ATOMIC FORCE; MODELS, BIOLOGICAL; ULTRACENTRIFUGATION;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 8844266092     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2004.10.051     Document Type: Article

References (31)

1. Robinow C., Kellenberger E. The bacterial nucleoid revisited. Micorbiol. Rev. 58:1994;211-232
2. Kim J., Yoshimura S.H., Hizume K., Ohniwa R.L., Ishihama A., Takeyasu K. Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy. Nucleic Acids Res. 32:2004;1982-1992
3. Frenkiel-Krispin D., Ben-Avraham I., Englander J., Shimoni E., Wolf S.G., Minsky A. Nucleoid restructuring in stationary-state bacteria. Mol. Microbiol. 51:2004;395-405
4. Hinnebusch B.J., Bendich A. The bacterial nucleoid visualized by fluorescence microscopy of cells lysed within agarose: comparison of Escherichia coli ans Spirotchetes of the genus Borrelia. J. Bacteriol. 179:1997;2228-2237
5. Azam T.A., Iwata A., Nishimura A., Ueda S., Ishihama A. Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J. Bacteriol. 181:1999;6361-6370
6. Schneider R., Muskhelisvili G. FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli. Mol. Microbiol. 26:1997;519-530
7. Dorman C.J., Deighan P. Regulation of gene expression by histone-like proteins in bacteria. Curr. Opin. Genet. Dev. 13:2003;179-184
8. Sharpe M.E., Errington J. Upheaval in the bacterial nucleoid. Trends Genet. 15:1999;70-74
9. Rothe A., Urmoneit B., Messewr W. Functions of histone-like proteins in the initiation of DNA replication at oriC of Escherichia coli. Biochimie. 76:1994;917-923
10. Bahloul A., Boubrik F., Rouviere-Yaniv J. Roles of Escherichia coli histone-like protein HU in DNA replication: HU-beta suppresses the thermosensitivity of dnaA46ts. Biochimie. 83:2001;219-229
11. Bruand C., Ehrlich S.D., Janniere L. Primosome assembly site in Bacillus subtilis. EMBO J. 14:1995;2642-2650
12. Bruand C., Sorokin A., Serror P., Ehrlich S.D. Nucleotide sequence of the Bacillus subtilis dnaD gene. Microbiology. 141:1995;321-322
13. Bruand C., Farache M., McGovern S., Ehrlich S.D., Polard P. DnaB, DnaD and DnaI proteins are components of the Bacillus subtilis replication restart primosome. Mol. Microbiol. 42:2001;245-255
14. Li Y., Kurokawa K., Matsuao M., Fukuhara N., Murakami K., Sekimizu K. Identification of temperature-sensitive dnaD mutants of Staphylococcus aureus that are defective in chromosomal DNA replication. Mol. Gen. Genom. 272:2004;447-457
15. Ishigo-Oka D., Ogasawara N., Moriya S. DnaD protein of Bacillus subtilis interacts with DnaA, the initiator protein of replication. J. Bacteriol. 183:2001;2148-2150
16. Marsin S., McGovern S., Ehrlich S.D., Bruand C., Polard P. Early steps of Bacillus subtilis primosome assembly. J. Biol. Chem. 276:2001;45818-45825
17. Soultanas P. A functional interaction between the putative primosomal protein DnaI and the main replicative DNA helicase DnaB in Bacillus. Nucleic Acids Res. 30:2002;966-974
18. Velten M., McGovern S., Marsin S., Ehrlich S.D., Noirot P., Polard P. A two-protein strategy for the functional loading of a cellular replicative DNA helicase. Mol. Cell. 11:2003;1009-1020
19. Hoshino T., McKenzie T., Schmidt S., Tanaka T., Sueoka N. Nucleotide sequence of Bacillus subtilis dnaB: a gene essential for DNA replication initiation and membrane attachment. Proc. Natl. Acad. Sci. USA. 84:1987;653-657
20. Rokop M.E., Auchtung J.M., Grossman A.D. Control of DNA replication initiation by recruitment of an essential initiation protein to the membrane of Bacillus subtilis. Mol. Microbiol. 52:2004;1757-1767
21. Sueoka N. Cell membrane and chromosome replication in Bacillus subtilis. Progr. Nucleic Acid Res. 59:1998;34-53
22. Lovett S.T., Segall A.M. New views on bacterial chromosome: symposium on bacterial chromosomes. EMBO Rep. 5:2004;860-864
23. Schuck P. Size distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling. Biophys. J. 78:2000;1606-1619
24. Laue T.M., Shah B., Ridgeway T., Pelletier S. Harding S., Rowe A., Horyon J. Analytical Ultracentrifugation in Biochemistry and Polymer Science. 1992;90-125 Royal Society of Chemistry, Cambridge
25. Haroniti A., Till R., Smith M.C.M., Soultanas P. Clamp-loader-helicase interaction in Bacillus. Leucine381 is critical for pentamerisation and helicase-binding of the Bacillus tau protein. Biochemistry. 42:2003;10955-10964
26. Cann J.R. Interacting Macromolecules. 1970;Academic Press
27. Schroder O., Wagner R. The bacterial regulatory protein H-NS A versatile modulator of nucleic acid structures. Biol. Chem. 383:2002;945-960
28. Dame R.T., Goosen N. HU: promoting or counteracting DNA compaction? FEBS Lett. 529:2002;151-156
29. Yoshimura S.H., Ohniwa R.L., Sato M.H., Matsuna G.A.F., Kobayashi G., Uga H., Wada C., Takeyasu K. DNA phase transition promoted by replication initiator. Biochemistry. 39:2000;9139-9145
30. Ben-Yehuda S., Rudner D.Z., Losick R. RacA, a bacterial protein that anchors chromosomes to the cell poles. Science. 299:2003;532-536
31. Moriya S., Imai Y., Hassan A.K.M., Ogasawara N. Regulation of initiation of Bacillus subtilis chromosome replication. Plasmid. 41:1999;17-29