Does smearing inoculum reflect the bacterial composition of the smear at the end of the ripening of a French soft, red-smear cheese?

Journal of Dairy Science

Volumn 87, Issue 10, 2004, Pages 3189-3197

  Feurer, C ^a   Vallaeys, T ^a,b   Corrieu, G ^a   Irlinger, F ^a  

^a CEMAGREF   (France)

^b INSTITUT PASTEUR   (France)

Author keywords

Colonization potentiality; Red smear soft cheese; Single strand conformation polymorphism; Smearing inoculum

Indexed keywords

ARTHROBACTER; BACTERIA (MICROORGANISMS);

EID: 6944228181     PISSN: 00220302     EISSN: None     Source Type: Journal    
DOI: 10.3168/jds.S0022-0302(04)73454-2     Document Type: Article

References (41)

1. Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucl. Acids Res. 25:3389-3402.
2. Axelrood, P. E., M. L. Chow, C. S. Arnold, K. Lu, J. M. McDermott, and J. Davies. 2002. Cultivation-dependent characterization of bacterial diversity from British Columbia forest soils subjected to disturbance. Can. J. Microbiol. 48:643-654.
3. Birnboim, H. C., and J. Doly. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucl. Acids Res. 7:1513-1523.
4. Blickstad, E., and G. Molin. 1983. The microbial flora of smoked pork loin and frankfurter sausage stored in different gas atmospheres at 4°C. J. Appl. Bacteriol. 54:45-56.
5. Bockelmann, W., and T. Hoppe-Seyler. 2001. The surface flora of bacterial smear-ripened cheeses from cow's and goat's milk. Int. Dairy J. 11:307-314.
6. Bockelmann, W. 2002. Development of defined surface starter cultures for the ripening of smear cheeses. Int. Dairy J. 12:123-131.
7. Böttger, E. C. 1989. Rapid determination of bacterial ribosomal RNA sequences by direct sequencing of enzymatically amplified DNA. FEMS Microbiol. Lett. 65:171-176.
8. Brennan, N., A. C. Ward, T. Bersford, P. Fox, M. Goodfellow, and T. Cogan. 2002. Biodiversity of the bacterial flora on the surface of a smear cheese. Appl. Environ. Microbiol. 68:820-830.
9. Brosius, J., M. L. Palmer, P. J. Kennedy, and H. F. Noller. 1978. Complete nucleotide sequence of 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
10. Carminati, D., E. Neviani, G. Ottogalli, and G. Giraffa. 1999. Use of surface-smear bacteria for inhibition of Listeria monocytogenes on the rind of smear cheese. Food Microbiol. 16:29-36.
11. Conn, H. J. 1928. A type of bacteria abundant in productive soils, but apparently lacking in certain soils of low productivity. NY State Agric. Exp. Stn. Tech. Bull. 138:3-26.
12. Coppola, S., G. Blaiotta, D. Ercolini, and G. Moschetti. 2001. Molecular evaluation of microbial diversity occurring in different types of Mozzarella cheese. J. Appl. Microbiol. 90:414-420.
13. Duthoit, F., J. J. Godon, and M. C. Montel. 2003. Bacterial community dynamics during production of registered designation of origin Salers cheese as evaluated by 16S rRNA gene single-strand conformation polymorphism analysis. Appl. Environ. Microbiol. 69:3840-3848.
14. El-Erian, A.F.M. 1969. Bacteriological Studies on Limburger Cheese. Mededelingen van de Land-bouwhogeschool, Wageningen, The Netherlands.
15. Eliskases-Lechner, F., and W. Ginzinger. 1995. The bacterial flora of surface ripened cheese with special regard to coryneforms. Lait 75:571-584.
16. Ewing, B., and P. Green. 1998a. Base-calling of automated sequencer traces using PHRED. I. Accuracy assessment. Genome. Res. 8:175-185.
17. Ewing, B., and P. Green. 1998b. Base-calling of automated sequencer traces using PHRED. II. Error probabilities. Genome Res. 8:186-94.
18. Farrelly, V., F. A. Rainey, and E. Stackebrandt. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61:2798-2801.
19. Feurer, C., F. Irlinger, H. E. Spinnler, P. Glaser, and T. Vallaeys. 2004. Assessment of the rind microbial diversity in a farmhouse-produced versus a pasteurized industrially produced soft red-smear cheese using both cultivation and rDNA based methods. J. Appl. Microbiol. (accepted).
20. Fleet, G. H. 1990. Yeasts in dairy products. J. Appl. Bacteriol. 68:199-211.
21. Gordon, D., C. Abajian, and P. Green. 1998. Consed: A graphical tool for sequence finishing. Genome Res. 8:195-202.
22. Hayashi, K. 1991. PCR-SSCP: A simple and sensitive method for detection of mutations in the genomic DNA. PCR Methods Appl. 1:34-38.
23. Heyrman, J., J. Mergaert, R. Denys, and J. Swings. 1999. The use of fatty acid methyl ester analysis (FAME) for the identification of heterotrophic bacteria present on three mural paintings showing severe damage by microorganisms. FEMS Microbiol. Lett. 181:55-62.
24. Kelly, C. D., and J. C. Marquardt. 1939. The influence of hydrogen ion concentration and salt on the surface flora of Limburger cheese. J. Dairy Sci. 22:309-320.
25. Leclercq-Perlat, M.-N., G. Corrieu, and H.-E. Spinnler. 2004. The color of Brevibacterium linens depends on the yeast used for cheese deacidification. J. Dairy Sci. 87:(accepted).
26. Lenoir, J. 1984. The surface flora and its role in the ripening of cheese. IDF Bull. 171:3-20.
27. Maisnier-Patin, S., and J. Richard. 1995. Activity and purification of linenscin OC2, an antibacterial substance produced by Brevibacterium linens OC2, an orange cheese coryneform bacteria. Appl. Environ. Microbiol. 61:1847-1852.
28. Maoz, A., R. Mayr, and S. Scherer. 2003. Temporal stability and biodiversity of two complex antilisterial cheese-ripening microbial consortia. Appl. Environ. Microbiol. 69:4012-4018.
29. Ogier, J. C., O. Son, A. Gruss, P. Tailliez, and A. Delacroix-Buchet. 2002. Identification of the bacterial microflora in dairy products by temporal temperature gradient gel electrophoresis. Appl. Environ. Microbiol. 68:3691-3701.
30. Orita, M., Y. Suzuki, T. Sekiya, and K. Hayashi. 1989. Rapid and sensitive detection of point mutations and DNA polymorphism using the polymerase chain reaction. Genomics 5:874-879.
31. Purko, M., W. O. Nelson, and W. A. Wood. 1951. The associative action between certain yeasts and Bacterium linens. J. Dairy Sci. 34:699-701.
32. Randazzo, C. L., S. Torriani, A.D.L. Akkermans, W. M. De Vos, and E. E. Vaughan. 2002. Diversity, dynamics, and activity of bacterial communities during production of an artisanal Sicilian cheese as evaluated by 16S rRNA analysis. Appl. Environ. Microbiol. 68:1882-1892.
33. Reps, A. 1993. Bacterial smear-ripened cheese. Pages 137-172 in Cheese: Chemistry, Physics and Microbiology. Vol. 2. Major Cheese Groups. 2nd ed. P. F. Fox, ed. Chapman and Hall, London, United Kingdom.
34. Schabereiter-Gurtner, C., G. Piñar, D. Vybiral, W. Lubitz, and S. Rölleke. 2001. Rutrobacter-related bacteria associated with rosy discolouration of masonry and lime wall paintings. Arch. Microbiol. 176:347-354.
35. Seiler, H. 1986. Identification of cheese smear coryneform bacteria. J. Dairy Res. 53:439-449.
36. Stackebrandt, E., and B. M. Goebel. 1994. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
37. Valdés Stauber, N., S. Scherer, and H. Seiler. 1997. Identification of yeasts and coryneform bacteria from the surface microflora of brick cheeses. Int. J. Food Microbiol. 34:115-129.
38. Voigt, K., E. Cigelnik, and K. O'Donnell. 1999. Phylogeny and PCR identification of clinically important zygomycetes based on nuclear ribosomal DNA sequence data. J. Clin. Microbiol. 37:3957-3964.
39. Wintzingerode, F., U. B. Göbel, and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
40. Zoentendal, E. G., A. D. Akkermans, and W. M. De Vos. 2000. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl. Environ. Microbiol. 64:3854-3859.
41. Zumstein, E., R. Moletta, and J. J. Godon. 2000. Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis. Environ. Microbiol. 2:69-78.