메뉴 건너뛰기




Volumn 392, Issue 1, 2009, Pages 94-102

Avian Sarcoma and Leukemia Virus (ASLV) integration in vitro: Mutation or deletion of integrase (IN) recognition sequences does not prevent but only reduces the efficiency and accuracy of DNA integration

Author keywords

Avian Sarcoma and Leukemia Viruses; Concerted DNA integration; IN recognition sequences; Retroviral integration

Indexed keywords

INTEGRASE;

EID: 69349084931     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2009.06.031     Document Type: Article
Times cited : (4)

References (42)
  • 1
    • 0029974222 scopus 로고    scopus 로고
    • Concerted integration of linear retroviral DNA by the avian sarcoma virus integrase in vitro: dependence on both long terminal repeat termini
    • Aiyar A., Hindmarsh P., Skalka A.M., and Leis J. Concerted integration of linear retroviral DNA by the avian sarcoma virus integrase in vitro: dependence on both long terminal repeat termini. J. Virol. 70 6 (1996) 3571-3580
    • (1996) J. Virol. , vol.70 , Issue.6 , pp. 3571-3580
    • Aiyar, A.1    Hindmarsh, P.2    Skalka, A.M.3    Leis, J.4
  • 2
    • 27944468727 scopus 로고    scopus 로고
    • Synaptic complex formation of two retrovirus DNA attachment sites by integrase: a fluorescence energy transfer study
    • Bera S., Vora A.C., Chiu R., Heyduk T., and Grandgenett D.P. Synaptic complex formation of two retrovirus DNA attachment sites by integrase: a fluorescence energy transfer study. Biochemistry 44 46 (2005) 15106-15114
    • (2005) Biochemistry , vol.44 , Issue.46 , pp. 15106-15114
    • Bera, S.1    Vora, A.C.2    Chiu, R.3    Heyduk, T.4    Grandgenett, D.P.5
  • 3
    • 0037192826 scopus 로고    scopus 로고
    • Changes in the mechanism of DNA integration in vitro induced by base substitutions in the HIV-1 U5 and U3 terminal sequences
    • Brin E., and Leis J. Changes in the mechanism of DNA integration in vitro induced by base substitutions in the HIV-1 U5 and U3 terminal sequences. J. Biol. Chem. 277 13 (2002) 10938-10948
    • (2002) J. Biol. Chem. , vol.277 , Issue.13 , pp. 10938-10948
    • Brin, E.1    Leis, J.2
  • 4
    • 0037166281 scopus 로고    scopus 로고
    • HIV-1 integrase interaction with U3 and U5 terminal sequences in vitro defined using substrates with random sequences
    • Brin E., and Leis J. HIV-1 integrase interaction with U3 and U5 terminal sequences in vitro defined using substrates with random sequences. J. Biol. Chem. 277 21 (2002) 18357-18364
    • (2002) J. Biol. Chem. , vol.277 , Issue.21 , pp. 18357-18364
    • Brin, E.1    Leis, J.2
  • 5
    • 0001363865 scopus 로고    scopus 로고
    • Integration
    • Coffin J.M., Hugues S.H., and Varmus H.E. (Eds), Cold Spring Harbor Laboratory Press, Cold spring Harbor, New York
    • Brown P.O. Integration. In: Coffin J.M., Hugues S.H., and Varmus H.E. (Eds). Retroviruses (1997), Cold Spring Harbor Laboratory Press, Cold spring Harbor, New York 161-204
    • (1997) Retroviruses , pp. 161-204
    • Brown, P.O.1
  • 6
    • 0034812967 scopus 로고    scopus 로고
    • Asymmetric processing of human immunodeficiency virus type 1 cDNA in vivo: implications for functional end coupling during the chemical steps of DNA transposition
    • Chen H., and Engelman A. Asymmetric processing of human immunodeficiency virus type 1 cDNA in vivo: implications for functional end coupling during the chemical steps of DNA transposition. Mol. Cell. Biol. 21 20 (2001) 6758-6767
    • (2001) Mol. Cell. Biol. , vol.21 , Issue.20 , pp. 6758-6767
    • Chen, H.1    Engelman, A.2
  • 7
    • 0033856452 scopus 로고    scopus 로고
    • Avian retrovirus DNA internal attachment site requirements for full-site integration in vitro
    • Chiu R., and Grandgenett D.P. Avian retrovirus DNA internal attachment site requirements for full-site integration in vitro. J. Virol. 74 18 (2000) 8292-8298
    • (2000) J. Virol. , vol.74 , Issue.18 , pp. 8292-8298
    • Chiu, R.1    Grandgenett, D.P.2
  • 8
    • 0038702597 scopus 로고    scopus 로고
    • Molecular and genetic determinants of Rous sarcoma virus integrase for concerted DNA integration
    • Chiu R., and Grandgenett D.P. Molecular and genetic determinants of Rous sarcoma virus integrase for concerted DNA integration. J. Virol. 77 11 (2003) 6482-6492
    • (2003) J. Virol. , vol.77 , Issue.11 , pp. 6482-6492
    • Chiu, R.1    Grandgenett, D.P.2
  • 9
    • 0025031786 scopus 로고
    • The IN protein of Moloney murine leukemia virus processes the viral DNA ends and accomplishes their integration in vitro
    • Craigie R., Fujiwara T., and Bushman F. The IN protein of Moloney murine leukemia virus processes the viral DNA ends and accomplishes their integration in vitro. Cell 62 4 (1990) 829-837
    • (1990) Cell , vol.62 , Issue.4 , pp. 829-837
    • Craigie, R.1    Fujiwara, T.2    Bushman, F.3
  • 11
    • 64649089647 scopus 로고    scopus 로고
    • Biochemical and biophysical analyses of concerted (U5/U3) integration
    • 47 (4), 229-236
    • Grandgenett D.P., Bera S., Pandey K.K., Vora A.C., Zahm J., and Sinha S. Biochemical and biophysical analyses of concerted (U5/U3) integration. Methods (2009) 47 (4), 229-236
    • (2009) Methods
    • Grandgenett, D.P.1    Bera, S.2    Pandey, K.K.3    Vora, A.C.4    Zahm, J.5    Sinha, S.6
  • 13
    • 0035155757 scopus 로고    scopus 로고
    • Base-pair substitutions in avian sarcoma virus U5 and U3 long terminal repeat sequences alter the process of DNA integration in vitro
    • Hindmarsh P., Johnson M., Reeves R., and Leis J. Base-pair substitutions in avian sarcoma virus U5 and U3 long terminal repeat sequences alter the process of DNA integration in vitro. J. Virol. 75 3 (2001) 1132-1141
    • (2001) J. Virol. , vol.75 , Issue.3 , pp. 1132-1141
    • Hindmarsh, P.1    Johnson, M.2    Reeves, R.3    Leis, J.4
  • 14
    • 0032615650 scopus 로고    scopus 로고
    • Reconstitution of concerted DNA integration with purified components
    • Hindmarsh P., and Leis J. Reconstitution of concerted DNA integration with purified components. Adv. Virus Res. 52 (1999) 397-410
    • (1999) Adv. Virus Res. , vol.52 , pp. 397-410
    • Hindmarsh, P.1    Leis, J.2
  • 15
    • 0033052713 scopus 로고    scopus 로고
    • HMG protein family members stimulate human immunodeficiency virus type 1 and avian sarcoma virus concerted DNA integration in vitro
    • Hindmarsh P., Ridky T., Reeves R., Andrake M., Skalka A.M., and Leis J. HMG protein family members stimulate human immunodeficiency virus type 1 and avian sarcoma virus concerted DNA integration in vitro. J. Virol. 73 4 (1999) 2994-3003
    • (1999) J. Virol. , vol.73 , Issue.4 , pp. 2994-3003
    • Hindmarsh, P.1    Ridky, T.2    Reeves, R.3    Andrake, M.4    Skalka, A.M.5    Leis, J.6
  • 16
    • 0019830444 scopus 로고
    • A Rous sarcoma virus provirus is flanked by short direct repeats of a cellular DNA sequence present in only one copy prior to integration
    • Hughes S.H., Mutschler A., Bishop J.M., and Varmus H.E. A Rous sarcoma virus provirus is flanked by short direct repeats of a cellular DNA sequence present in only one copy prior to integration. Proc. Natl. Acad. Sci. U. S. A. 78 7 (1981) 4299-4303
    • (1981) Proc. Natl. Acad. Sci. U. S. A. , vol.78 , Issue.7 , pp. 4299-4303
    • Hughes, S.H.1    Mutschler, A.2    Bishop, J.M.3    Varmus, H.E.4
  • 17
    • 0018865797 scopus 로고
    • Isolation and characterization of recombinant DNA clones of avian retroviruses: size heterogeneity and instability of the direct repeat
    • Ju G., Boone L., and Skalka A.M. Isolation and characterization of recombinant DNA clones of avian retroviruses: size heterogeneity and instability of the direct repeat. J. Virol. 33 3 (1980) 1026-1033
    • (1980) J. Virol. , vol.33 , Issue.3 , pp. 1026-1033
    • Ju, G.1    Boone, L.2    Skalka, A.M.3
  • 19
    • 0024431589 scopus 로고
    • The avian retroviral integration protein cleaves the terminal sequences of linear viral DNA at the in vivo sites of integration
    • Katzman M., Katz R.A., Skalka A.M., and Leis J. The avian retroviral integration protein cleaves the terminal sequences of linear viral DNA at the in vivo sites of integration. J. Virol. 63 12 (1989) 5319-5327
    • (1989) J. Virol. , vol.63 , Issue.12 , pp. 5319-5327
    • Katzman, M.1    Katz, R.A.2    Skalka, A.M.3    Leis, J.4
  • 20
    • 0025011051 scopus 로고
    • The avian retroviral IN protein is both necessary and sufficient for integrative recombination in vitro
    • Katz R.A., Merkel G., Kulkosky J., Leis J., and Skalka A.M. The avian retroviral IN protein is both necessary and sufficient for integrative recombination in vitro. Cell 63 1 (1990) 87-95
    • (1990) Cell , vol.63 , Issue.1 , pp. 87-95
    • Katz, R.A.1    Merkel, G.2    Kulkosky, J.3    Leis, J.4    Skalka, A.M.5
  • 21
    • 0035823488 scopus 로고    scopus 로고
    • Role of DNA end distortion in catalysis by avian sarcoma virus integrase
    • Katz R.A., DiCandeloro P., Kukolj G., and Skalka A.M. Role of DNA end distortion in catalysis by avian sarcoma virus integrase. J. Biol. Chem. 276 36 (2001) 34213-34220
    • (2001) J. Biol. Chem. , vol.276 , Issue.36 , pp. 34213-34220
    • Katz, R.A.1    DiCandeloro, P.2    Kukolj, G.3    Skalka, A.M.4
  • 22
    • 0031682564 scopus 로고    scopus 로고
    • Specific and independent recognition of U3 and U5 att sites by human immunodeficiency virus type 1 integrase in vivo
    • Masuda T., Kuroda M.J., and Harada S. Specific and independent recognition of U3 and U5 att sites by human immunodeficiency virus type 1 integrase in vivo. J. Virol. 72 10 (1998) 8396-8402
    • (1998) J. Virol. , vol.72 , Issue.10 , pp. 8396-8402
    • Masuda, T.1    Kuroda, M.J.2    Harada, S.3
  • 23
    • 0033526841 scopus 로고    scopus 로고
    • Retrovirus DNA termini bound by integrase communicate in trans for full-site integration in vitro
    • McCord M., Chiu R., Vora A.C., and Grandgenett D.P. Retrovirus DNA termini bound by integrase communicate in trans for full-site integration in vitro. Virology 259 2 (1999) 392-401
    • (1999) Virology , vol.259 , Issue.2 , pp. 392-401
    • McCord, M.1    Chiu, R.2    Vora, A.C.3    Grandgenett, D.P.4
  • 24
    • 0034610241 scopus 로고    scopus 로고
    • In vivo retroviral integration: fidelity to size of the host DNA duplication might be reduced when integration occurs near sequences homologous to LTR ends
    • Moreau K., Torne-Celer C., Faure C., Verdier G., and Ronfort C. In vivo retroviral integration: fidelity to size of the host DNA duplication might be reduced when integration occurs near sequences homologous to LTR ends. Virology 278 1 (2000) 133-136
    • (2000) Virology , vol.278 , Issue.1 , pp. 133-136
    • Moreau, K.1    Torne-Celer, C.2    Faure, C.3    Verdier, G.4    Ronfort, C.5
  • 25
    • 0036042078 scopus 로고    scopus 로고
    • Analysis of conserved and non-conserved amino acids critical for ALSV (Avian Leukemia And Sarcoma Viruses) integrase functions in vitro
    • Moreau K., Faure C., Verdier G., and Ronfort C. Analysis of conserved and non-conserved amino acids critical for ALSV (Avian Leukemia And Sarcoma Viruses) integrase functions in vitro. Arch. Virol. 147 9 (2002) 1761-1778
    • (2002) Arch. Virol. , vol.147 , Issue.9 , pp. 1761-1778
    • Moreau, K.1    Faure, C.2    Verdier, G.3    Ronfort, C.4
  • 26
    • 0344011674 scopus 로고    scopus 로고
    • Mutations in the C-terminal domain of ALSV (Avian Leukemia and Sarcoma Viruses) integrase alter the concerted DNA integration process in vitro
    • Moreau K., Faure C., Violot S., Verdier G., and Ronfort C. Mutations in the C-terminal domain of ALSV (Avian Leukemia and Sarcoma Viruses) integrase alter the concerted DNA integration process in vitro. Eur. J. Biochem. 270 22 (2003) 4426-4438
    • (2003) Eur. J. Biochem. , vol.270 , Issue.22 , pp. 4426-4438
    • Moreau, K.1    Faure, C.2    Violot, S.3    Verdier, G.4    Ronfort, C.5
  • 27
    • 1242283909 scopus 로고    scopus 로고
    • Mutational analyses of the core domain of Avian Leukemia and Sarcoma Viruses integrase: critical residues for concerted integration and multimerization
    • Moreau K., Faure C., Violot S., Gouet P., Verdier G., and Ronfort C. Mutational analyses of the core domain of Avian Leukemia and Sarcoma Viruses integrase: critical residues for concerted integration and multimerization. Virology 318 2 (2004) 566-581
    • (2004) Virology , vol.318 , Issue.2 , pp. 566-581
    • Moreau, K.1    Faure, C.2    Violot, S.3    Gouet, P.4    Verdier, G.5    Ronfort, C.6
  • 28
    • 0031878384 scopus 로고    scopus 로고
    • In vivo Ty1 reverse transcription can generate replication intermediates with untidy ends
    • Mules E.H., Uzun O., and Gabriel A. In vivo Ty1 reverse transcription can generate replication intermediates with untidy ends. J. Virol. 72 8 (1998) 6490-6503
    • (1998) J. Virol. , vol.72 , Issue.8 , pp. 6490-6503
    • Mules, E.H.1    Uzun, O.2    Gabriel, A.3
  • 29
    • 0026652466 scopus 로고
    • A mutation at one end of Moloney murine leukemia virus DNA blocks cleavage of both ends by the viral integrase in vivo
    • Murphy J.E., and Goff S.P. A mutation at one end of Moloney murine leukemia virus DNA blocks cleavage of both ends by the viral integrase in vivo. J. Virol. 66 8 (1992) 5092-5095
    • (1992) J. Virol. , vol.66 , Issue.8 , pp. 5092-5095
    • Murphy, J.E.1    Goff, S.P.2
  • 30
    • 33749474353 scopus 로고    scopus 로고
    • Alternate polypurine tracts affect Rous sarcoma virus integration in vivo
    • Oh J., Chang K.W., Alvord W.G., and Hughes S.H. Alternate polypurine tracts affect Rous sarcoma virus integration in vivo. J. Virol. 80 20 (2006) 10281-10284
    • (2006) J. Virol. , vol.80 , Issue.20 , pp. 10281-10284
    • Oh, J.1    Chang, K.W.2    Alvord, W.G.3    Hughes, S.H.4
  • 31
    • 33645965892 scopus 로고    scopus 로고
    • Mutations in the U5 sequences adjacent to the primer binding site do not affect tRNA cleavage by Rous sarcoma virus RNase H but do cause aberrant integrations in vivo
    • Oh J., Chang K.W., and Hughes S.H. Mutations in the U5 sequences adjacent to the primer binding site do not affect tRNA cleavage by Rous sarcoma virus RNase H but do cause aberrant integrations in vivo. J. Virol. 80 1 (2006) 451-459
    • (2006) J. Virol. , vol.80 , Issue.1 , pp. 451-459
    • Oh, J.1    Chang, K.W.2    Hughes, S.H.3
  • 32
    • 55549094449 scopus 로고    scopus 로고
    • Integration of Rous sarcoma virus DNA: a CA dinucleotide is not required for integration of the U3 end of viral DNA
    • Oh J., Chang K.W., and Hughes S.H. Integration of Rous sarcoma virus DNA: a CA dinucleotide is not required for integration of the U3 end of viral DNA. J. Virol. 82 22 (2008) 11480-11483
    • (2008) J. Virol. , vol.82 , Issue.22 , pp. 11480-11483
    • Oh, J.1    Chang, K.W.2    Hughes, S.H.3
  • 33
    • 37349095944 scopus 로고    scopus 로고
    • Rous sarcoma virus (RSV) integration in vivo: a CA dinucleotide is not required in U3, and RSV linear DNA does not autointegrate
    • Oh J., Chang K.W., Wierzchoslawski R., Alvord W.G., and Hughes S.H. Rous sarcoma virus (RSV) integration in vivo: a CA dinucleotide is not required in U3, and RSV linear DNA does not autointegrate. J. Virol. 82 1 (2008) 503-512
    • (2008) J. Virol. , vol.82 , Issue.1 , pp. 503-512
    • Oh, J.1    Chang, K.W.2    Wierzchoslawski, R.3    Alvord, W.G.4    Hughes, S.H.5
  • 34
    • 0031050297 scopus 로고    scopus 로고
    • Disruption of the terminal base pairs of retroviral DNA during integration
    • Scottoline B.P., Chow S., Ellison V., and Brown P.O. Disruption of the terminal base pairs of retroviral DNA during integration. Genes Dev. 11 3 (1997) 371-382
    • (1997) Genes Dev. , vol.11 , Issue.3 , pp. 371-382
    • Scottoline, B.P.1    Chow, S.2    Ellison, V.3    Brown, P.O.4
  • 35
    • 0036118227 scopus 로고    scopus 로고
    • Efficient concerted integration by recombinant human immunodeficiency virus type 1 integrase without cellular or viral cofactors
    • Sinha S., Pursley M.H., and Grandgenett D.P. Efficient concerted integration by recombinant human immunodeficiency virus type 1 integrase without cellular or viral cofactors. J. Virol. 76 7 (2002) 3105-3113
    • (2002) J. Virol. , vol.76 , Issue.7 , pp. 3105-3113
    • Sinha, S.1    Pursley, M.H.2    Grandgenett, D.P.3
  • 36
    • 33947398161 scopus 로고    scopus 로고
    • Following the path of the virus: the exploitation of host DNA repair mechanisms by retroviruses
    • Smith J.A., and Daniel R. Following the path of the virus: the exploitation of host DNA repair mechanisms by retroviruses. ACS Chem. Biol. 1 4 (2006) 217-226
    • (2006) ACS Chem. Biol. , vol.1 , Issue.4 , pp. 217-226
    • Smith, J.A.1    Daniel, R.2
  • 37
    • 0035088065 scopus 로고    scopus 로고
    • DNase protection analysis of retrovirus integrase at the viral DNA ends for full-site integration in vitro
    • Vora A., and Grandgenett D.P. DNase protection analysis of retrovirus integrase at the viral DNA ends for full-site integration in vitro. J. Virol. 75 8 (2001) 3556-3567
    • (2001) J. Virol. , vol.75 , Issue.8 , pp. 3556-3567
    • Vora, A.1    Grandgenett, D.P.2
  • 38
    • 2442595088 scopus 로고    scopus 로고
    • Structural organization of avian retrovirus integrase in assembled intasomes mediating full-site integration
    • Vora A., Bera S., and Grandgenett D. Structural organization of avian retrovirus integrase in assembled intasomes mediating full-site integration. J. Biol. Chem. 279 18 (2004) 18670-18678
    • (2004) J. Biol. Chem. , vol.279 , Issue.18 , pp. 18670-18678
    • Vora, A.1    Bera, S.2    Grandgenett, D.3
  • 39
    • 0028784884 scopus 로고
    • Assembly and catalytic properties of retrovirus integrase-DNA complexes capable of efficiently performing concerted integration
    • Vora A.C., and Grandgenett D.P. Assembly and catalytic properties of retrovirus integrase-DNA complexes capable of efficiently performing concerted integration. J. Virol. 69 12 (1995) 7483-7488
    • (1995) J. Virol. , vol.69 , Issue.12 , pp. 7483-7488
    • Vora, A.C.1    Grandgenett, D.P.2
  • 40
    • 0028116161 scopus 로고
    • Efficient concerted integration of retrovirus-like DNA in vitro by avian myeloblastosis virus integrase
    • Vora A.C., McCord M., Fitzgerald M.L., Inman R.B., and Grandgenett D.P. Efficient concerted integration of retrovirus-like DNA in vitro by avian myeloblastosis virus integrase. Nucleic Acids Res. 22 21 (1994) 4454-4461
    • (1994) Nucleic Acids Res. , vol.22 , Issue.21 , pp. 4454-4461
    • Vora, A.C.1    McCord, M.2    Fitzgerald, M.L.3    Inman, R.B.4    Grandgenett, D.P.5
  • 41
    • 0030879696 scopus 로고    scopus 로고
    • Avian retrovirus U3 and U5 DNA inverted repeats. Role of nonsymmetrical nucleotides in promoting full-site integration by purified virion and bacterial recombinant integrases
    • Vora A.C., Chiu R., McCord M., Goodarzi G., Stahl S.J., Mueser T.C., Hyde C.C., and Grandgenett D.P. Avian retrovirus U3 and U5 DNA inverted repeats. Role of nonsymmetrical nucleotides in promoting full-site integration by purified virion and bacterial recombinant integrases. J. Biol. Chem. 272 38 (1997) 23938-23945
    • (1997) J. Biol. Chem. , vol.272 , Issue.38 , pp. 23938-23945
    • Vora, A.C.1    Chiu, R.2    McCord, M.3    Goodarzi, G.4    Stahl, S.J.5    Mueser, T.C.6    Hyde, C.C.7    Grandgenett, D.P.8
  • 42
    • 0032169780 scopus 로고    scopus 로고
    • Footprints on the viral DNA ends in Moloney murine leukemia virus preintegration complexes reflect a specific association with integrase
    • Wei S.Q., Mizuuchi K., and Craigie R. Footprints on the viral DNA ends in Moloney murine leukemia virus preintegration complexes reflect a specific association with integrase. Proc. Natl. Acad. Sci. U. S. A. 95 18 (1998) 10535-10540
    • (1998) Proc. Natl. Acad. Sci. U. S. A. , vol.95 , Issue.18 , pp. 10535-10540
    • Wei, S.Q.1    Mizuuchi, K.2    Craigie, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.