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Volumn 260, Issue 3, 2009, Pages 340-352

Investigating the two-moment characterisation of subcellular biochemical networks

Author keywords

(Co)variance; Cell cycle; Mean; Noise; Two moment approximation

Indexed keywords

BIOCHEMISTRY; CONCEPTUAL FRAMEWORK; COVARIANCE ANALYSIS; MODELING; NOISE; SIMULATION; STOCHASTICITY;

EID: 69249209842     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2009.05.022     Document Type: Article
Times cited : (28)

References (79)
  • 2
    • 34547689412 scopus 로고    scopus 로고
    • Aumaître, S., Mallick, K., Pétrélis, F., 2007. Noise-induced bifurcations, multiscaling and on-off intermittency, Journal of Statistical Mechanics: Theory and Experiment 07, P07016. doi:10.1088/1742-5468/2007/07/P07016.
    • Aumaître, S., Mallick, K., Pétrélis, F., 2007. Noise-induced bifurcations, multiscaling and on-off intermittency, Journal of Statistical Mechanics: Theory and Experiment 07, P07016. doi:10.1088/1742-5468/2007/07/P07016.
  • 4
    • 37649018636 scopus 로고    scopus 로고
    • Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities
    • 10.1073/pnas.0706110104
    • Artyomov M.N., Das J., Kardar M., and Chakraborty A.K. Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities. Proc. Natl. Acad. Sci. USA 104 48 (2007) 18958-18963 10.1073/pnas.0706110104
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , Issue.48 , pp. 18958-18963
    • Artyomov, M.N.1    Das, J.2    Kardar, M.3    Chakraborty, A.K.4
  • 5
    • 25144450143 scopus 로고    scopus 로고
    • Contributions of low molecule number and chromosomal positioning to stochastic gene expression
    • 10.1038/ng1616
    • Becskei A., Kaufmann B.B., and van Oudenaarden A. Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nat. Genet. 37 9 (2005) 937-944 10.1038/ng1616
    • (2005) Nat. Genet. , vol.37 , Issue.9 , pp. 937-944
    • Becskei, A.1    Kaufmann, B.B.2    van Oudenaarden, A.3
  • 6
    • 0033855774 scopus 로고    scopus 로고
    • Fluctuations and quality of control in biological cells: zero-order ultrasensitivity reinvestigated
    • Berg O.G., Paulsson J., and Ehrenberg M. Fluctuations and quality of control in biological cells: zero-order ultrasensitivity reinvestigated. Biophys. J. 79 3 (2000) 1228-1236
    • (2000) Biophys. J. , vol.79 , Issue.3 , pp. 1228-1236
    • Berg, O.G.1    Paulsson, J.2    Ehrenberg, M.3
  • 7
    • 33749644563 scopus 로고    scopus 로고
    • Fluctuations for good and bad: the role of noise in living systems
    • 10.1016/j.plrev.2006.06.001
    • Blomberg C. Fluctuations for good and bad: the role of noise in living systems. Phys. Life Rev. 3 (2006) 133-161 10.1016/j.plrev.2006.06.001
    • (2006) Phys. Life Rev. , vol.3 , pp. 133-161
    • Blomberg, C.1
  • 8
    • 33645813418 scopus 로고    scopus 로고
    • On the attenuation and amplification of molecular noise in genetic regulatory networks
    • 10.1186/1471-2105-7-52
    • Chen B.S., and Wang Y.C. On the attenuation and amplification of molecular noise in genetic regulatory networks. BMC Bioinformatics 7 (2006) 52 10.1186/1471-2105-7-52
    • (2006) BMC Bioinformatics , vol.7 , pp. 52
    • Chen, B.S.1    Wang, Y.C.2
  • 9
    • 33744792286 scopus 로고    scopus 로고
    • Analysis of a generic model of eukaryotic cell cycle regulation
    • 10.1529/biophysj.106.081240
    • Csikász-Nagy A., Battogtokh D., Chen K.C., Novák B., and Tyson J.J. Analysis of a generic model of eukaryotic cell cycle regulation. Biophys. J. 90 (2006) 4361-4379 10.1529/biophysj.106.081240
    • (2006) Biophys. J. , vol.90 , pp. 4361-4379
    • Csikász-Nagy, A.1    Battogtokh, D.2    Chen, K.C.3    Novák, B.4    Tyson, J.J.5
  • 10
    • 0000315224 scopus 로고
    • Physical aspects of the growth and regulation of microtubule structures
    • 10.1103/PhysRevLett.70.1347
    • Dogterom M., and Leibler S. Physical aspects of the growth and regulation of microtubule structures. Phys. Rev. Lett. 70 9 (1993) 1347 10.1103/PhysRevLett.70.1347
    • (1993) Phys. Rev. Lett. , vol.70 , Issue.9 , pp. 1347
    • Dogterom, M.1    Leibler, S.2
  • 11
    • 33846108256 scopus 로고    scopus 로고
    • Noise in transcription negative feedback loops: simulation and experimental analysis
    • 10.1038/msb4100081
    • Dublanche Y., Michalodimitrakis K., Kümmerer N., Foglierini M., and Serrano L. Noise in transcription negative feedback loops: simulation and experimental analysis. Mol. Syst. Biol. 2 (2006) 41 10.1038/msb4100081
    • (2006) Mol. Syst. Biol. , vol.2 , pp. 41
    • Dublanche, Y.1    Michalodimitrakis, K.2    Kümmerer, N.3    Foglierini, M.4    Serrano, L.5
  • 12
    • 0242490781 scopus 로고    scopus 로고
    • Fast evaluation of fluctuations in biochemical networks with the linear noise approximation
    • 10.1101/gr.1196503
    • Elf J., and Ehrenberg M. Fast evaluation of fluctuations in biochemical networks with the linear noise approximation. Genome Res. 13 11 (2003) 2475-2484 10.1101/gr.1196503
    • (2003) Genome Res. , vol.13 , Issue.11 , pp. 2475-2484
    • Elf, J.1    Ehrenberg, M.2
  • 13
    • 12244269687 scopus 로고    scopus 로고
    • Near-critical phenomena in intracellular metabolite pools
    • Elf J., Paulsson J., Berg O.G., and Ehrenberg M. Near-critical phenomena in intracellular metabolite pools. Biophys. J. 84 1 (2003) 154-170
    • (2003) Biophys. J. , vol.84 , Issue.1 , pp. 154-170
    • Elf, J.1    Paulsson, J.2    Berg, O.G.3    Ehrenberg, M.4
  • 14
    • 69249207769 scopus 로고    scopus 로고
    • A hierarchy of approximations of the master equation scaled by a size parameter
    • Technical Report 2007-011, Uppsala University, Department of Information Technology
    • Ferm, L., Lötstedt, P., Hellander, A., 2007. A hierarchy of approximations of the master equation scaled by a size parameter. Technical Report 2007-011, Uppsala University, Department of Information Technology.
    • (2007)
    • Ferm, L.1    Lötstedt, P.2    Hellander, A.3
  • 15
    • 0037605637 scopus 로고    scopus 로고
    • Bistability in cell signaling: how to make continuous processes discontinuous, and reversible processes irreversible
    • 10.1063/1.1349894
    • Ferrell J.E., and Xiong W. Bistability in cell signaling: how to make continuous processes discontinuous, and reversible processes irreversible. Chaos: Int. J. Nonlinear Sci. 11 1 (2001) 227-236 10.1063/1.1349894
    • (2001) Chaos: Int. J. Nonlinear Sci. , vol.11 , Issue.1 , pp. 227-236
    • Ferrell, J.E.1    Xiong, W.2
  • 16
    • 16644373292 scopus 로고    scopus 로고
    • Noise minimization in eukaryotic gene expression
    • 10.1371/journal.pbio.0020137
    • Fraser H.B., Hirsh A.E., Giaever G., Kumm J., and Eisen M.B. Noise minimization in eukaryotic gene expression. PLoS Biol. 2 6 (2004) e137 10.1371/journal.pbio.0020137
    • (2004) PLoS Biol. , vol.2 , Issue.6
    • Fraser, H.B.1    Hirsh, A.E.2    Giaever, G.3    Kumm, J.4    Eisen, M.B.5
  • 17
    • 33846250352 scopus 로고    scopus 로고
    • Mass fluctuation kinetics: capturing stochastic effects in systems of chemical reactions through coupled mean-variance computations
    • 10.1063/1.2408422
    • Gómez-Uribe C.A., and Verghese G.C. Mass fluctuation kinetics: capturing stochastic effects in systems of chemical reactions through coupled mean-variance computations. J. Chem. Phys. 126 2 (2007) 024109 10.1063/1.2408422
    • (2007) J. Chem. Phys. , vol.126 , Issue.2 , pp. 024109
    • Gómez-Uribe, C.A.1    Verghese, G.C.2
  • 18
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • 10.1021/jp993732q
    • Gillespie D. Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81 25 (1977) 2340-2361 10.1021/jp993732q
    • (1977) J. Phys. Chem. , vol.81 , Issue.25 , pp. 2340-2361
    • Gillespie, D.1
  • 19
    • 0030516386 scopus 로고    scopus 로고
    • The multivariate Langevin and Fokker-Planck equations
    • 10.1119/1.18387
    • Gillespie D. The multivariate Langevin and Fokker-Planck equations. Am. J. Phys. 64 10 (1996) 1246-1257 10.1119/1.18387
    • (1996) Am. J. Phys. , vol.64 , Issue.10 , pp. 1246-1257
    • Gillespie, D.1
  • 20
    • 0034225547 scopus 로고    scopus 로고
    • The chemical Langevin equation
    • 10.1063/1.481811
    • Gillespie D. The chemical Langevin equation. J. Chem. Phys. 113 1 (2000) 297-306 10.1063/1.481811
    • (2000) J. Chem. Phys. , vol.113 , Issue.1 , pp. 297-306
    • Gillespie, D.1
  • 21
    • 33144465372 scopus 로고    scopus 로고
    • A hidden Markov model for transcriptional regulation in single cells
    • 10.1109/TCBB.2006.2
    • Goutsias J. A hidden Markov model for transcriptional regulation in single cells. IEEE/ACM Trans. Comput. Biol. Bioinform. 3 1 (2006) 57-71 10.1109/TCBB.2006.2
    • (2006) IEEE/ACM Trans. Comput. Biol. Bioinform. , vol.3 , Issue.1 , pp. 57-71
    • Goutsias, J.1
  • 22
    • 34047240691 scopus 로고    scopus 로고
    • Classical versus stochastic kinetics modeling of biochemical reaction systems
    • 10.1529/biophysj.106.093781
    • Goutsias J. Classical versus stochastic kinetics modeling of biochemical reaction systems. Biophys. J. 92 7 (2007) 2350-2365 10.1529/biophysj.106.093781
    • (2007) Biophys. J. , vol.92 , Issue.7 , pp. 2350-2365
    • Goutsias, J.1
  • 23
    • 0034050722 scopus 로고    scopus 로고
    • Noise-based switches and amplifiers for gene expression
    • 10.1073/pnas.040411297
    • Hasty J., Pradines J., Dolnik M., and Collins J.J. Noise-based switches and amplifiers for gene expression. Proc. Natl. Acad. Sci. USA 97 5 (2000) 2075-2080 10.1073/pnas.040411297
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , Issue.5 , pp. 2075-2080
    • Hasty, J.1    Pradines, J.2    Dolnik, M.3    Collins, J.J.4
  • 24
    • 27244445075 scopus 로고    scopus 로고
    • The linear noise approximation for molecular fluctuations within cells
    • 10.1088/1478-3967/1/4/002
    • Hayot F., and Jayaprakash C. The linear noise approximation for molecular fluctuations within cells. Phys. Biol. 1 4 (2004) 205-210 10.1088/1478-3967/1/4/002
    • (2004) Phys. Biol. , vol.1 , Issue.4 , pp. 205-210
    • Hayot, F.1    Jayaprakash, C.2
  • 25
    • 0035439412 scopus 로고    scopus 로고
    • An algorithmic introduction to numerical simulation of stochastic differential equations
    • 10.1137/S0036144500378302
    • Higham D.J. An algorithmic introduction to numerical simulation of stochastic differential equations. SIAM Rev. 43 3 (2001) 525-546 10.1137/S0036144500378302
    • (2001) SIAM Rev. , vol.43 , Issue.3 , pp. 525-546
    • Higham, D.J.1
  • 26
    • 38949194331 scopus 로고    scopus 로고
    • Noise propagation and signaling sensitivity in biological networks: a role for positive feedback
    • 10.1371/journal.pcbi.0040008
    • Hornung G., and Barkai N. Noise propagation and signaling sensitivity in biological networks: a role for positive feedback. PLoS Comput. Biol. 4 1 (2008) e8 10.1371/journal.pcbi.0040008
    • (2008) PLoS Comput. Biol. , vol.4 , Issue.1
    • Hornung, G.1    Barkai, N.2
  • 27
    • 19544379881 scopus 로고    scopus 로고
    • Stochasticity in gene expression: from theories to phenotypes
    • 10.1038/nrg1615
    • Kaern M., Elston T.C., Blake W.J., and Collins J.J. Stochasticity in gene expression: from theories to phenotypes. Nat. Rev. Genet. 6 6 (2005) 451-464 10.1038/nrg1615
    • (2005) Nat. Rev. Genet. , vol.6 , Issue.6 , pp. 451-464
    • Kaern, M.1    Elston, T.C.2    Blake, W.J.3    Collins, J.J.4
  • 31
    • 33750147302 scopus 로고    scopus 로고
    • The interplay between discrete noise and nonlinear chemical kinetics in a signal amplification cascade
    • 10.1063/1.2358342
    • Lan Y., and Papoian G.A. The interplay between discrete noise and nonlinear chemical kinetics in a signal amplification cascade. J. Chem. Phys. 125 15 (2006) 154901 10.1063/1.2358342
    • (2006) J. Chem. Phys. , vol.125 , Issue.15 , pp. 154901
    • Lan, Y.1    Papoian, G.A.2
  • 32
    • 0002783430 scopus 로고
    • Fluctuations from the nonequilibrium steady state
    • 10.1103/RevModPhys.32.25
    • Lax M. Fluctuations from the nonequilibrium steady state. Rev. Mod. Phys. 32 1 (1960) 25-64 10.1103/RevModPhys.32.25
    • (1960) Rev. Mod. Phys. , vol.32 , Issue.1 , pp. 25-64
    • Lax, M.1
  • 33
    • 34250334326 scopus 로고    scopus 로고
    • Intrinsic fluctuations, robustness, and tunability in signaling cycles
    • 10.1529/biophysj.106.088856
    • Levine J., Kueh H.Y., and Mirny L. Intrinsic fluctuations, robustness, and tunability in signaling cycles. Biophys. J. 92 12 (2007) 4473-4481 10.1529/biophysj.106.088856
    • (2007) Biophys. J. , vol.92 , Issue.12 , pp. 4473-4481
    • Levine, J.1    Kueh, H.Y.2    Mirny, L.3
  • 34
    • 29244462834 scopus 로고    scopus 로고
    • Transcriptional stochasticity in gene expression
    • 10.1016/j.jtbi.2005.05.032
    • Lipniacki T., Paszek P., Brasier A., Luxon B., and Kimmel M. Transcriptional stochasticity in gene expression. J. Theor. Biol. 238 (2006) 348-367 10.1016/j.jtbi.2005.05.032
    • (2006) J. Theor. Biol. , vol.238 , pp. 348-367
    • Lipniacki, T.1    Paszek, P.2    Brasier, A.3    Luxon, B.4    Kimmel, M.5
  • 35
    • 34250372591 scopus 로고    scopus 로고
    • From single-cell genetic architecture to cell population dynamics: quantitatively decomposing the effects of different population heterogeneity sources for a genetic network with positive feedback architecture
    • 10.1529/biophysj.106.100271
    • Mantzaris N.V. From single-cell genetic architecture to cell population dynamics: quantitatively decomposing the effects of different population heterogeneity sources for a genetic network with positive feedback architecture. Biophys. J. 92 12 (2007) 4271-4288 10.1529/biophysj.106.100271
    • (2007) Biophys. J. , vol.92 , Issue.12 , pp. 4271-4288
    • Mantzaris, N.V.1
  • 37
    • 2342470688 scopus 로고    scopus 로고
    • Noise-reduction through interaction in gene expression and biochemical reaction processes
    • 10.1016/j.jtbi.2004.01.007
    • Morishita Y., and Aihara K. Noise-reduction through interaction in gene expression and biochemical reaction processes. J. Theor. Biol. 228 3 (2004) 315-325 10.1016/j.jtbi.2004.01.007
    • (2004) J. Theor. Biol. , vol.228 , Issue.3 , pp. 315-325
    • Morishita, Y.1    Aihara, K.2
  • 38
    • 69249218235 scopus 로고    scopus 로고
    • online
    • MathWorks, T., 2007. 〈www.mathworks.com〉 Matlab R2007b (online).
    • (2007) MathWorks, T
  • 40
    • 0346245914 scopus 로고    scopus 로고
    • Modelling the controls of the eukaryotic cell cycle
    • Novák B., and Tyson J.J. Modelling the controls of the eukaryotic cell cycle. Biochem. Soc. Trans. 31 Pt 6 (2003) 1526-1529
    • (2003) Biochem. Soc. Trans. , vol.31 , Issue.PART 6 , pp. 1526-1529
    • Novák, B.1    Tyson, J.J.2
  • 41
    • 0032485826 scopus 로고    scopus 로고
    • Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions
    • 10.1016/S0301-4622(98)00133-1
    • Novák B., Csikasz-Nagy A., Gyorffy B., Chen K., and Tyson J.J. Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions. Biophys. Chem. 72 1-2 (1998) 185-200 10.1016/S0301-4622(98)00133-1
    • (1998) Biophys. Chem. , vol.72 , Issue.1-2 , pp. 185-200
    • Novák, B.1    Csikasz-Nagy, A.2    Gyorffy, B.3    Chen, K.4    Tyson, J.J.5
  • 42
    • 0035579883 scopus 로고    scopus 로고
    • Mathematical model of the cell division cycle of fission yeast
    • 10.1063/1.1345725
    • Novák B., Pataki Z., Ciliberto A., and Tyson J.J. Mathematical model of the cell division cycle of fission yeast. Chaos: Int. J. Nonlinear Sci. 11 1 (2001) 277-286 10.1063/1.1345725
    • (2001) Chaos: Int. J. Nonlinear Sci. , vol.11 , Issue.1 , pp. 277-286
    • Novák, B.1    Pataki, Z.2    Ciliberto, A.3    Tyson, J.J.4
  • 43
    • 0034614334 scopus 로고    scopus 로고
    • A long twentieth century of the cell cycle and beyond
    • 10.1016/S0092-8674(00)81684-0
    • Nurse P. A long twentieth century of the cell cycle and beyond. Cell 100 1 (2000) 71-78 10.1016/S0092-8674(00)81684-0
    • (2000) Cell , vol.100 , Issue.1 , pp. 71-78
    • Nurse, P.1
  • 44
    • 1442354192 scopus 로고    scopus 로고
    • Multistability in the lactose utilization network of Escherichia coli
    • 10.1038/nature02298
    • Ozbudak E.M., Thattai M., Lim H.N., Shraiman B.I., and Oudenaarden A.V. Multistability in the lactose utilization network of Escherichia coli. Nature 427 6976 (2004) 737-740 10.1038/nature02298
    • (2004) Nature , vol.427 , Issue.6976 , pp. 737-740
    • Ozbudak, E.M.1    Thattai, M.2    Lim, H.N.3    Shraiman, B.I.4    Oudenaarden, A.V.5
  • 45
    • 34249881396 scopus 로고    scopus 로고
    • Modeling stochasticity in gene regulation: characterization in the terms of the underlying distribution function
    • 10.1007/s11538-006-9176-7
    • Paszek P. Modeling stochasticity in gene regulation: characterization in the terms of the underlying distribution function. Bull. Math. Biol. 69 (2007) 1567-1601 10.1007/s11538-006-9176-7
    • (2007) Bull. Math. Biol. , vol.69 , pp. 1567-1601
    • Paszek, P.1
  • 46
    • 0842285841 scopus 로고    scopus 로고
    • Summing up the noise
    • 10.1038/nature02257
    • Paulsson J. Summing up the noise. Nature 427 (2004) 415-418 10.1038/nature02257
    • (2004) Nature , vol.427 , pp. 415-418
    • Paulsson, J.1
  • 47
    • 20344389483 scopus 로고    scopus 로고
    • Models of stochastic gene expression
    • 10.1016/j.plrev.2005.03.003
    • Paulsson J. Models of stochastic gene expression. Phys. Life Rev. 2 (2005) 157-175 10.1016/j.plrev.2005.03.003
    • (2005) Phys. Life Rev. , vol.2 , pp. 157-175
    • Paulsson, J.1
  • 48
    • 0034608143 scopus 로고    scopus 로고
    • Random signal fluctuations can reduce random fluctuations in regulated components of chemical regulatory networks
    • 10.1103/PhysRevLett.84.5447
    • Paulsson J., and Ehrenberg M. Random signal fluctuations can reduce random fluctuations in regulated components of chemical regulatory networks. Phys. Rev. Lett. 84 (2000) 5447-5450 10.1103/PhysRevLett.84.5447
    • (2000) Phys. Rev. Lett. , vol.84 , pp. 5447-5450
    • Paulsson, J.1    Ehrenberg, M.2
  • 49
    • 0034981558 scopus 로고    scopus 로고
    • Noise in a minimal regulatory network: plasmid copy number control
    • 10.1017/S0033583501003663
    • Paulsson J., and Ehrenberg M. Noise in a minimal regulatory network: plasmid copy number control. Quart. Rev. Biophys. 34 1 (2001) 1-59 10.1017/S0033583501003663
    • (2001) Quart. Rev. Biophys. , vol.34 , Issue.1 , pp. 1-59
    • Paulsson, J.1    Ehrenberg, M.2
  • 50
    • 53249118703 scopus 로고    scopus 로고
    • Stochastic modeling of intracellular kinetics
    • Szallasi Z., Stelling J., and Periwal V. (Eds), The MIT Press, Cambridge, MA
    • Paulsson J., and Elf J. Stochastic modeling of intracellular kinetics. In: Szallasi Z., Stelling J., and Periwal V. (Eds). System Modeling in Cellular Biology (2006), The MIT Press, Cambridge, MA 149-176
    • (2006) System Modeling in Cellular Biology , pp. 149-176
    • Paulsson, J.1    Elf, J.2
  • 51
    • 0034691214 scopus 로고    scopus 로고
    • Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation
    • 10.1073/ypnas.110057697
    • Paulsson J., Berg O., and Ehrenberg M. Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation. Proc. Natl. Acad. Sci. USA 97 (2000) 7148-7153 10.1073/ypnas.110057697
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 7148-7153
    • Paulsson, J.1    Berg, O.2    Ehrenberg, M.3
  • 52
    • 15544388848 scopus 로고    scopus 로고
    • Noise propagation in gene networks
    • 10.1126/science.1109090
    • Pedraza J.M., and van Oudenaarden A. Noise propagation in gene networks. Science 307 5717 (2005) 1965-1969 10.1126/science.1109090
    • (2005) Science , vol.307 , Issue.5717 , pp. 1965-1969
    • Pedraza, J.M.1    van Oudenaarden, A.2
  • 53
    • 0036135425 scopus 로고    scopus 로고
    • From discrete protein kinetics to continuous Brownian dynamics: a new perspective
    • Qian H. From discrete protein kinetics to continuous Brownian dynamics: a new perspective. Protein Sci. 11 1 (2002) 1-5
    • (2002) Protein Sci. , vol.11 , Issue.1 , pp. 1-5
    • Qian, H.1
  • 54
    • 0037078982 scopus 로고    scopus 로고
    • Control, exploitation and tolerance of intracellular noise
    • 10.1038/nature01258
    • Rao C.V., Wolf D.M., and Arkin A.P. Control, exploitation and tolerance of intracellular noise. Nature 420 6912 (2002) 231-237 10.1038/nature01258
    • (2002) Nature , vol.420 , Issue.6912 , pp. 231-237
    • Rao, C.V.1    Wolf, D.M.2    Arkin, A.P.3
  • 55
    • 25444468618 scopus 로고    scopus 로고
    • Noise in gene expression: origins, consequences, and control
    • 10.1126/science.1105891
    • Raser J.M., and O'Shea E.K. Noise in gene expression: origins, consequences, and control. Science 309 5743 (2005) 2010-2013 10.1126/science.1105891
    • (2005) Science , vol.309 , Issue.5743 , pp. 2010-2013
    • Raser, J.M.1    O'Shea, E.K.2
  • 57
    • 14044265753 scopus 로고    scopus 로고
    • Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations
    • 10.1073/pnas.0406841102
    • Samoilov M., Plyasunov S., and Arkin A.P. Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations. Proc. Natl. Acad. Sci. USA 102 7 (2005) 2310-2315 10.1073/pnas.0406841102
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , Issue.7 , pp. 2310-2315
    • Samoilov, M.1    Plyasunov, S.2    Arkin, A.P.3
  • 58
    • 33745711647 scopus 로고    scopus 로고
    • Estimations of intrinsic and extrinsic noise in models of nonlinear genetic networks
    • 10.1063/1.2211787
    • Scott M., Ingalls B., and Kaern M. Estimations of intrinsic and extrinsic noise in models of nonlinear genetic networks. Chaos: Int. J. Nonlinear Sci. 16 2 (2006) 026107 10.1063/1.2211787
    • (2006) Chaos: Int. J. Nonlinear Sci. , vol.16 , Issue.2 , pp. 026107
    • Scott, M.1    Ingalls, B.2    Kaern, M.3
  • 61
    • 43249118966 scopus 로고    scopus 로고
    • Colored extrinsic fluctuations and stochastic gene expression
    • 10.1038/msb.2008.31
    • Shahrezaei V., Ollivier J.F., and Swain P.S. Colored extrinsic fluctuations and stochastic gene expression. Mol. Syst. Biol. 4 (2008) 196 10.1038/msb.2008.31
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 196
    • Shahrezaei, V.1    Ollivier, J.F.2    Swain, P.S.3
  • 62
    • 46849105469 scopus 로고    scopus 로고
    • Noise generation, amplification and propagation in chemotactic signaling systems of living cells
    • 10.1016/j.biosystems.2008.04.003
    • Shibata T., and Ueda M. Noise generation, amplification and propagation in chemotactic signaling systems of living cells. Biosystems 93 1-2 (2008) 126-132 10.1016/j.biosystems.2008.04.003
    • (2008) Biosystems , vol.93 , Issue.1-2 , pp. 126-132
    • Shibata, T.1    Ueda, M.2
  • 63
    • 0009543725 scopus 로고
    • Application of the theory of stochastic processes to the study of irreproducible chemical reactions and nucleation processes
    • Singer K. Application of the theory of stochastic processes to the study of irreproducible chemical reactions and nucleation processes. J. Roy. Stat. Soc. B (Met.) 15 1 (1953) 92-106
    • (1953) J. Roy. Stat. Soc. B (Met.) , vol.15 , Issue.1 , pp. 92-106
    • Singer, K.1
  • 64
    • 2342508415 scopus 로고    scopus 로고
    • Effects of stochasticity in models of the cell cycle: from quantized cycle times to noise-induced oscillations
    • 10.1016/j.jtbi.2004.01.012
    • Steuer R. Effects of stochasticity in models of the cell cycle: from quantized cycle times to noise-induced oscillations. J. Theor. Biol. 228 3 (2004) 293-301 10.1016/j.jtbi.2004.01.012
    • (2004) J. Theor. Biol. , vol.228 , Issue.3 , pp. 293-301
    • Steuer, R.1
  • 65
    • 0030446289 scopus 로고    scopus 로고
    • The size control of fission yeast revisited
    • 〈arxiv:http://jcs.biologists.org/cgi/reprint/109/12/2947.pdf〉
    • Sveiczer A., Novák B., and Mitchison J. The size control of fission yeast revisited. J. Cell Sci. 109 12 (1996) 2947-2957. http://arxiv:http://jcs.biologists.org/cgi/reprint/109/12/2947.pdf 〈arxiv:http://jcs.biologists.org/cgi/reprint/109/12/2947.pdf〉
    • (1996) J. Cell Sci. , vol.109 , Issue.12 , pp. 2947-2957
    • Sveiczer, A.1    Novák, B.2    Mitchison, J.3
  • 66
    • 0034608810 scopus 로고    scopus 로고
    • Modeling the fission yeast cell cycle: quantized cycle times in wee-cdc25 delta mutant cells
    • 10.1073/pnas.97.14.7865
    • Sveiczer A., Csikasz-Nagy A., Gyorffy B., Tyson J.J., and Novák B. Modeling the fission yeast cell cycle: quantized cycle times in wee-cdc25 delta mutant cells. Proc. Natl. Acad. Sci. USA 97 14 (2000) 7865-7870 10.1073/pnas.97.14.7865
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , Issue.14 , pp. 7865-7870
    • Sveiczer, A.1    Csikasz-Nagy, A.2    Gyorffy, B.3    Tyson, J.J.4    Novák, B.5
  • 67
    • 0035975697 scopus 로고    scopus 로고
    • A stochastic, molecular model of the fission yeast cell cycle: role of the nucleocytoplasmic ratio in cycle time regulation
    • 10.1016/S0301-4622(01)00183-1
    • Sveiczer A., Tyson J.J., and Novák B. A stochastic, molecular model of the fission yeast cell cycle: role of the nucleocytoplasmic ratio in cycle time regulation. Biophys. Chem. 92 1-2 (2001) 1-15 10.1016/S0301-4622(01)00183-1
    • (2001) Biophys. Chem. , vol.92 , Issue.1-2 , pp. 1-15
    • Sveiczer, A.1    Tyson, J.J.2    Novák, B.3
  • 68
    • 45649084041 scopus 로고    scopus 로고
    • The mean and noise of stochastic gene transcription
    • 10.1016/j.jtbi.2008.03.023
    • Tang M. The mean and noise of stochastic gene transcription. J. Theor. Biol. 253 (2008) 271-280 10.1016/j.jtbi.2008.03.023
    • (2008) J. Theor. Biol. , vol.253 , pp. 271-280
    • Tang, M.1
  • 69
    • 33646975343 scopus 로고    scopus 로고
    • Stochastic fluctuations in gene expression far from equilibrium: omega expansion and linear noise approximation
    • 10.1063/1.1870874
    • Tao Y., Jia Y., and Dewey T.G. Stochastic fluctuations in gene expression far from equilibrium: omega expansion and linear noise approximation. J. Chem. Phys. 122 12 (2005) 124108 10.1063/1.1870874
    • (2005) J. Chem. Phys. , vol.122 , Issue.12 , pp. 124108
    • Tao, Y.1    Jia, Y.2    Dewey, T.G.3
  • 70
    • 0036111831 scopus 로고    scopus 로고
    • Attenuation of noise in ultrasensitive signaling cascades
    • Thattai M., and van Oudenaarden A. Attenuation of noise in ultrasensitive signaling cascades. Biophys. J. 82 6 (2002) 2943-2950
    • (2002) Biophys. J. , vol.82 , Issue.6 , pp. 2943-2950
    • Thattai, M.1    van Oudenaarden, A.2
  • 71
    • 3042715501 scopus 로고    scopus 로고
    • Multivariate analysis of noise in genetic regulatory networks
    • 10.1016/j.jtbi.2004.04.034
    • Tomioka R., Kimura H., Kobayashi T.J., and Aihara K. Multivariate analysis of noise in genetic regulatory networks. J. Theor. Biol. 229 4 (2004) 501-521 10.1016/j.jtbi.2004.04.034
    • (2004) J. Theor. Biol. , vol.229 , Issue.4 , pp. 501-521
    • Tomioka, R.1    Kimura, H.2    Kobayashi, T.J.3    Aihara, K.4
  • 72
    • 3142577523 scopus 로고    scopus 로고
    • Stochastic approaches for modelling in vivo reactions
    • 10.1016/j.compbiolchem.2004.05.001
    • Turner T.E., Schnell S., and Burrage K. Stochastic approaches for modelling in vivo reactions. Comput. Biol. Chem. 28 3 (2004) 165-178 10.1016/j.compbiolchem.2004.05.001
    • (2004) Comput. Biol. Chem. , vol.28 , Issue.3 , pp. 165-178
    • Turner, T.E.1    Schnell, S.2    Burrage, K.3
  • 73
    • 0036905483 scopus 로고    scopus 로고
    • The dynamics of cell cycle regulation
    • 10.1002/bies.10191
    • Tyson J.J., Csikasz-Nagy A., and Novák B. The dynamics of cell cycle regulation. BioEssays 24 12 (2002) 1095-1109 10.1002/bies.10191
    • (2002) BioEssays , vol.24 , Issue.12 , pp. 1095-1109
    • Tyson, J.J.1    Csikasz-Nagy, A.2    Novák, B.3
  • 74
    • 0037376655 scopus 로고    scopus 로고
    • Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell
    • 10.1016/S0955-0674(03)00017-6
    • Tyson J.J., Chen K.C., and Novák B. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr. Opin. Cell Biol. 15 2 (2003) 221-231 10.1016/S0955-0674(03)00017-6
    • (2003) Curr. Opin. Cell Biol. , vol.15 , Issue.2 , pp. 221-231
    • Tyson, J.J.1    Chen, K.C.2    Novák, B.3
  • 75
    • 0037197850 scopus 로고    scopus 로고
    • Mechanisms of noise-resistance in genetic oscillators
    • 10.1073/pnas.092133899
    • Vilar J.M.G., Kueh H.Y., Barkai N., and Leibler S. Mechanisms of noise-resistance in genetic oscillators. Proc. Natl. Acad. Sci. USA 99 9 (2002) 5988-5992 10.1073/pnas.092133899
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , Issue.9 , pp. 5988-5992
    • Vilar, J.M.G.1    Kueh, H.Y.2    Barkai, N.3    Leibler, S.4
  • 76
    • 35748962596 scopus 로고    scopus 로고
    • Theoretical study of mesoscopic stochastic mechanism and effects of finite size on cell cycle of fission yeast
    • 10.1016/j.physa.2007.07.018
    • Yi M., Jia Y., Tang J., Zhan X., Yang L., and Liu Q. Theoretical study of mesoscopic stochastic mechanism and effects of finite size on cell cycle of fission yeast. Physica A: Stat. Mech. Appl. 387 1 (2008) 323-334 10.1016/j.physa.2007.07.018
    • (2008) Physica A: Stat. Mech. Appl. , vol.387 , Issue.1 , pp. 323-334
    • Yi, M.1    Jia, Y.2    Tang, J.3    Zhan, X.4    Yang, L.5    Liu, Q.6
  • 77
    • 34047130839 scopus 로고    scopus 로고
    • Roles of noise in single and coupled multiple genetic oscillators
    • 10.1063/1.2539037
    • Yoda M., Ushikubo T., Inoue W., and Sasai M. Roles of noise in single and coupled multiple genetic oscillators. J. Chem. Phys. 126 11 (2007) 115101 10.1063/1.2539037
    • (2007) J. Chem. Phys. , vol.126 , Issue.11 , pp. 115101
    • Yoda, M.1    Ushikubo, T.2    Inoue, W.3    Sasai, M.4
  • 78
    • 36148997654 scopus 로고    scopus 로고
    • Computational analysis of mammalian cell division gated by a circadian clock: quantized cell cycles and cell size control
    • 10.1177/0748730407307225
    • Zamborszky J., Hong C.I., and Csikasz Nagy A. Computational analysis of mammalian cell division gated by a circadian clock: quantized cell cycles and cell size control. J. Biol. Rhythm 22 6 (2007) 542-553 10.1177/0748730407307225
    • (2007) J. Biol. Rhythm , vol.22 , Issue.6 , pp. 542-553
    • Zamborszky, J.1    Hong, C.I.2    Csikasz Nagy, A.3
  • 79
    • 33749558169 scopus 로고    scopus 로고
    • Zhang, Y., Yu, H., Deng, M., Qian, M., 2006. Nonequilibrium Model for yeast cell cycle. Computational Intelligence and Bioinformatics, 786-791, doi:10.1007/11816102_84.
    • Zhang, Y., Yu, H., Deng, M., Qian, M., 2006. Nonequilibrium Model for yeast cell cycle. Computational Intelligence and Bioinformatics, 786-791, doi:10.1007/11816102_84.


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