메뉴 건너뛰기




Volumn 286, Issue 1, 1999, Pages 33-43

Effect of mutations in the A site of 16 S rRNA on aminoglycoside antibiotic-ribosome interaction

Author keywords

Antibiotic resistance; Decoding region; Paromomycin; rRNA structure

Indexed keywords

AMINOGLYCOSIDE ANTIBIOTIC AGENT; MESSENGER RNA; NUCLEOTIDE; PAROMOMYCIN; RIBOSOME RNA;

EID: 0033548073     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.2446     Document Type: Article
Times cited : (90)

References (41)
  • 1
    • 0032568576 scopus 로고    scopus 로고
    • RRNA chemical groups required for aminoglycoside binding
    • Blanchard S. C., Fourmy D., Eason R. G., Puglisi J. D. rRNA chemical groups required for aminoglycoside binding. Biochemistry. 37:1998;7716-7724.
    • (1998) Biochemistry , vol.37 , pp. 7716-7724
    • Blanchard, S.C.1    Fourmy, D.2    Eason, R.G.3    Puglisi, J.D.4
  • 2
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
    • Brosius J., Dull T. J., Sleeter D. D., Noller H. F. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 148:1981;107-127.
    • (1981) J. Mol. Biol. , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.D.3    Noller, H.F.4
  • 3
    • 0026620038 scopus 로고
    • Interaction between the two conserved single-stranded regions at the decoding site of small subunit ribosomal RNA is essential for ribosome function
    • Cunningham P. R., Nurse K., Bakin A., Weitzmann C. J., Pflumm M., Ofengand J. Interaction between the two conserved single-stranded regions at the decoding site of small subunit ribosomal RNA is essential for ribosome function. Biochemistry. 31:1992a;12012-12022.
    • (1992) Biochemistry , vol.31 , pp. 12012-12022
    • Cunningham, P.R.1    Nurse, K.2    Bakin, A.3    Weitzmann, C.J.4    Pflumm, M.5    Ofengand, J.6
  • 4
    • 0026803328 scopus 로고
    • G1401: A keystone nucleotide at the decoding site of Escherichia coli 30 S ribosomes
    • Cunningham P. R., Nurse K., Weitzmann C. J., Negre D., Ofengand J. G1401: a keystone nucleotide at the decoding site of Escherichia coli 30 S ribosomes. Biochemistry. 31:1992b;7629-7637.
    • (1992) Biochemistry , vol.31 , pp. 7629-7637
    • Cunningham, P.R.1    Nurse, K.2    Weitzmann, C.J.3    Negre, D.4    Ofengand, J.5
  • 5
    • 0027282806 scopus 로고
    • Functional effects of base changes which further define the decoding center of Escherichia coli 16 S ribosomal RNA. Mutation of C1404, G1405, C1496, G1497, U1498
    • Cunningham P. R., Nurse K., Weitzmann C. J., Ofengand J. Functional effects of base changes which further define the decoding center of Escherichia coli 16 S ribosomal RNA. Mutation of C1404, G1405, C1496, G1497, U1498. Biochemistry. 32:1993;7172-7180.
    • (1993) Biochemistry , vol.32 , pp. 7172-7180
    • Cunningham, P.R.1    Nurse, K.2    Weitzmann, C.J.3    Ofengand, J.4
  • 6
    • 0014429801 scopus 로고
    • Misreading of ribonucleic acid code words induced by aminoglycoside antibiotics
    • Davies J., Davis B. D. Misreading of ribonucleic acid code words induced by aminoglycoside antibiotics. J. Biol. Chem. 243:1968;3312-3316.
    • (1968) J. Biol. Chem. , vol.243 , pp. 3312-3316
    • Davies, J.1    Davis, B.D.2
  • 7
    • 0002751916 scopus 로고
    • Misreading of RNA codewords induced by aminoglycoside antibiotics
    • Davies J., Gorini L., Davis B. D. Misreading of RNA codewords induced by aminoglycoside antibiotics. Mol. Pharmacol. 1:1965;93-106.
    • (1965) Mol. Pharmacol. , vol.1 , pp. 93-106
    • Davies, J.1    Gorini, L.2    Davis, B.D.3
  • 8
    • 0025305692 scopus 로고
    • Effects of mutagenesis of a conserved base-paired site near the decoding region of Escherichia coli 16 S ribosomal RNA
    • DeStasio E. A., Dahlberg A. E. Effects of mutagenesis of a conserved base-paired site near the decoding region of Escherichia coli 16 S ribosomal RNA. J. Mol. Biol. 212:1990;127-133.
    • (1990) J. Mol. Biol. , vol.212 , pp. 127-133
    • Destasio, E.A.1    Dahlberg, A.E.2
  • 9
    • 0024424033 scopus 로고
    • Mutations in 16 S ribosomal RNA disrupt antibiotic-RNA interactions
    • DeStasio E. A., Moazed D., Noller H. F., Dahlberg A. E. Mutations in 16 S ribosomal RNA disrupt antibiotic-RNA interactions. EMBO J. 8:1989;1213-1216.
    • (1989) EMBO J. , vol.8 , pp. 1213-1216
    • Destasio, E.A.1    Moazed, D.2    Noller, H.F.3    Dahlberg, A.E.4
  • 10
    • 0024388825 scopus 로고
    • Defining the structural requirements for a helix in 23S ribosomal RNA that confers erythromycin resistance
    • Douthwaite S., Powers T., Lee J. Y., Noller H. F. Defining the structural requirements for a helix in 23S ribosomal RNA that confers erythromycin resistance. J. Mol. Biol. 209:1989;655-665.
    • (1989) J. Mol. Biol. , vol.209 , pp. 655-665
    • Douthwaite, S.1    Powers, T.2    Lee, J.Y.3    Noller, H.F.4
  • 11
    • 0024955239 scopus 로고
    • Development of an efficient method for generating and screening active trypsin and trypsin variants
    • Evnin L. B., Craik C. S. Development of an efficient method for generating and screening active trypsin and trypsin variants. Ann. NY Acad. Sci. 542:1988;61-74.
    • (1988) Ann. NY Acad. Sci. , vol.542 , pp. 61-74
    • Evnin, L.B.1    Craik, C.S.2
  • 12
    • 0032078373 scopus 로고    scopus 로고
    • The importance of base pairing in the penultimate stem of Escherichia coli 16 S rRNA for ribosomal subunit association
    • Firpo M. A., Dahlberg A. E. The importance of base pairing in the penultimate stem of Escherichia coli 16 S rRNA for ribosomal subunit association. Nucl. Acids Res. 26:1998;2156-2160.
    • (1998) Nucl. Acids Res. , vol.26 , pp. 2156-2160
    • Firpo, M.A.1    Dahlberg, A.E.2
  • 13
    • 0029825658 scopus 로고    scopus 로고
    • Structure of the A site of E. coli 16 S rRNA complexed with an aminoglycoside antibiotic
    • Fourmy D., Recht M. I., Blanchard S. C., Puglisi J. D. Structure of the A site of E. coli 16 S rRNA complexed with an aminoglycoside antibiotic. Science. 274:1996;1367-1371.
    • (1996) Science , vol.274 , pp. 1367-1371
    • Fourmy, D.1    Recht, M.I.2    Blanchard, S.C.3    Puglisi, J.D.4
  • 14
    • 0032571306 scopus 로고    scopus 로고
    • Binding of neomycin-class aminoglycoside antibiotics to the A site of 16 S rRNA
    • Fourmy D., Recht M. I., Puglisi J. D. Binding of neomycin-class aminoglycoside antibiotics to the A site of 16 S rRNA. J. Mol. Biol. 277:1998;347-362.
    • (1998) J. Mol. Biol. , vol.277 , pp. 347-362
    • Fourmy, D.1    Recht, M.I.2    Puglisi, J.D.3
  • 15
    • 0022424620 scopus 로고
    • Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes
    • Freier S. M., Alkema D., Sinclair A., Neilson T., Turner D. H. Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes. Biochemistry. 24:1985;4533-4539.
    • (1985) Biochemistry , vol.24 , pp. 4533-4539
    • Freier, S.M.1    Alkema, D.2    Sinclair, A.3    Neilson, T.4    Turner, D.H.5
  • 16
    • 0023040885 scopus 로고
    • Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: An empirical estimate of the energetics of hydrogen bonds in nucleic acids
    • Freier S. M., Sugimoto N., Sinclair A., Alkema D., Neilson T., Kierzek R., Caruthers M. H., Turner D. H. Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids. Biochemistry. 25:1986;3214-3219.
    • (1986) Biochemistry , vol.25 , pp. 3214-3219
    • Freier, S.M.1    Sugimoto, N.2    Sinclair, A.3    Alkema, D.4    Neilson, T.5    Kierzek, R.6    Caruthers, M.H.7    Turner, D.H.8
  • 19
    • 0028071557 scopus 로고
    • Collection of small subunit (16 S- And 16 S-like) ribosomal RNA structures: 1994
    • Gutell R. R. Collection of small subunit (16 S- and 16 S-like) ribosomal RNA structures: 1994. Nucl. Acids Res. 22:1994;3502-3507.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 3502-3507
    • Gutell, R.R.1
  • 20
    • 0023613953 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel T. A., Roberts J. D., Zakour R. A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol. 154:1987;367-382.
    • (1987) Methods Enzymol. , vol.154 , pp. 367-382
    • Kunkel, T.A.1    Roberts, J.D.2    Zakour, R.A.3
  • 21
    • 0030806152 scopus 로고    scopus 로고
    • A conformational switch in Escherichia coli 16 S ribosomal RNA during decoding of messenger RNA
    • Lodmell J. E., Dahlberg A. E. A conformational switch in Escherichia coli 16 S ribosomal RNA during decoding of messenger RNA. Science. 277:1997;1262-1267.
    • (1997) Science , vol.277 , pp. 1262-1267
    • Lodmell, J.E.1    Dahlberg, A.E.2
  • 22
    • 0029812492 scopus 로고    scopus 로고
    • An antibiotic-binding motif of an RNA fragment derived from the A-site-related region of Escherichia coli 16 S rRNA
    • Miyaguchi H., Narita H., Sakamoto K., Yokoyama S. An antibiotic-binding motif of an RNA fragment derived from the A-site-related region of Escherichia coli 16 S rRNA. Nucl. Acids Res. 24:1996;3700-3706.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 3700-3706
    • Miyaguchi, H.1    Narita, H.2    Sakamoto, K.3    Yokoyama, S.4
  • 23
    • 0022916242 scopus 로고
    • Transfer RNA shields specific nucleotides in 16 S ribosomal RNA from attack by chemical probes
    • Moazed D., Noller H. F. Transfer RNA shields specific nucleotides in 16 S ribosomal RNA from attack by chemical probes. Cell. 47:1986;985-994.
    • (1986) Cell , vol.47 , pp. 985-994
    • Moazed, D.1    Noller, H.F.2
  • 24
    • 0023238983 scopus 로고
    • Interaction of antibiotics with functional sites in 16 S ribosomal RNA
    • Moazed D., Noller H. F. Interaction of antibiotics with functional sites in 16 S ribosomal RNA. Nature. 327:1987;389-394.
    • (1987) Nature , vol.327 , pp. 389-394
    • Moazed, D.1    Noller, H.F.2
  • 25
    • 0025070318 scopus 로고
    • Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA
    • Moazed D., Noller H. F. Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA. J. Mol. Biol. 211:1990;135-145.
    • (1990) J. Mol. Biol. , vol.211 , pp. 135-145
    • Moazed, D.1    Noller, H.F.2
  • 26
    • 0029051704 scopus 로고
    • Specific protection of 16 S rRNA by translational initiation factors
    • Moazed D., Samaha R. R., Gualerzi C., Noller H. F. Specific protection of 16 S rRNA by translational initiation factors. J. Mol. Biol. 248:1995;207-210.
    • (1995) J. Mol. Biol , vol.248 , pp. 207-210
    • Moazed, D.1    Samaha, R.R.2    Gualerzi, C.3    Noller, H.F.4
  • 27
    • 0025733603 scopus 로고
    • Ribosomal RNA and translation
    • Noller H. F. Ribosomal RNA and translation. Annu. Rev. Biochem. 60:1991;191-227.
    • (1991) Annu. Rev. Biochem. , vol.60 , pp. 191-227
    • Noller, H.F.1
  • 28
    • 0025012472 scopus 로고
    • Dominant lethal mutations in a conserved loop in 16 S rRNA
    • Powers T., Noller H. F. Dominant lethal mutations in a conserved loop in 16 S rRNA. Proc. Natl Acad. Sci. USA. 87:1990;1042-1046.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 1042-1046
    • Powers, T.1    Noller, H.F.2
  • 29
    • 0025737972 scopus 로고
    • A functional pseudoknot in 16 S ribosomal RNA
    • Powers T., Noller H. F. A functional pseudoknot in 16 S ribosomal RNA. EMBO J. 10:1991;2203-2214.
    • (1991) EMBO J. , vol.10 , pp. 2203-2214
    • Powers, T.1    Noller, H.F.2
  • 30
    • 0027434504 scopus 로고
    • Allele-specific structure probing of plasmid-derived 16 S ribosomal RNA from Escherichia coli
    • Powers T., Noller H. F. Allele-specific structure probing of plasmid-derived 16 S ribosomal RNA from Escherichia coli. Gene. 123:1993;75-80.
    • (1993) Gene , vol.123 , pp. 75-80
    • Powers, T.1    Noller, H.F.2
  • 31
    • 0028157659 scopus 로고
    • The 530 loop of 16 S rRNA: A signal to EF-Tu?
    • Powers T., Noller H. F. The 530 loop of 16 S rRNA: a signal to EF-Tu? Trends Genet. 10:1994;27-31.
    • (1994) Trends Genet. , vol.10 , pp. 27-31
    • Powers, T.1    Noller, H.F.2
  • 33
    • 1842388479 scopus 로고    scopus 로고
    • RNA sequence determinants for aminoglycoside binding to an A-site rRNA model oligonucleotide
    • Recht M. I., Fourmy D., Blanchard S. C., Dahlquist K. D., Puglisi J. D. RNA sequence determinants for aminoglycoside binding to an A-site rRNA model oligonucleotide. J. Mol. Biol. 262:1996;421-436.
    • (1996) J. Mol. Biol. , vol.262 , pp. 421-436
    • Recht, M.I.1    Fourmy, D.2    Blanchard, S.C.3    Dahlquist, K.D.4    Puglisi, J.D.5
  • 34
    • 0014004365 scopus 로고
    • Polysomes extracted from Escherichia coli by freeze-thaw-lysozyme lysis
    • Ron E. Z., Kohler R. E., Davis B. D. Polysomes extracted from Escherichia coli by freeze-thaw-lysozyme lysis. Science. 153:1966;1119-1120.
    • (1966) Science , vol.153 , pp. 1119-1120
    • Ron, E.Z.1    Kohler, R.E.2    Davis, B.D.3
  • 35
    • 0024271795 scopus 로고
    • Antibiotic resistance mutations in ribosomal RNA genes of Escherichia coli
    • Sigmund C. D., Ettayebi M., Borden A., Morgan E. A. Antibiotic resistance mutations in ribosomal RNA genes of Escherichia coli. Methods Enzymol. 164:1988;673-690.
    • (1988) Methods Enzymol. , vol.164 , pp. 673-690
    • Sigmund, C.D.1    Ettayebi, M.2    Borden, A.3    Morgan, E.A.4
  • 36
    • 0024241761 scopus 로고
    • Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
    • Stern S., Moazed D., Noller H. F. Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol. 164:1988;481-489.
    • (1988) Methods Enzymol. , vol.164 , pp. 481-489
    • Stern, S.1    Moazed, D.2    Noller, H.F.3
  • 38
    • 0017883523 scopus 로고
    • Aminoglycoside antibiotics and eukaryotic protein synthesis: Stimulation of errors in the translation of natural messengers in extracts of cultured human cells
    • Wilhelm J. M., Jessop J. J., Pettitt S. E. Aminoglycoside antibiotics and eukaryotic protein synthesis: stimulation of errors in the translation of natural messengers in extracts of cultured human cells. Biochemistry. 17:1978a;1149-1153.
    • (1978) Biochemistry , vol.17 , pp. 1149-1153
    • Wilhelm, J.M.1    Jessop, J.J.2    Pettitt, S.E.3
  • 39
    • 0017843528 scopus 로고
    • Aminoglycoside antibiotics and eukaryotic protein synthesis: Structure-function relationships in the stimulation of misreading with a wheat embryo system
    • Wilhelm J. M., Pettitt S. E., Jessop J. J. Aminoglycoside antibiotics and eukaryotic protein synthesis: structure-function relationships in the stimulation of misreading with a wheat embryo system. Biochemistry. 17:1978b;1143-1149.
    • (1978) Biochemistry , vol.17 , pp. 1143-1149
    • Wilhelm, J.M.1    Pettitt, S.E.2    Jessop, J.J.3
  • 40
    • 0032538956 scopus 로고    scopus 로고
    • Structural origins of gentamicin antibiotic action
    • Yoshizawa S., Fourmy D., Puglisi J. D. Structural origins of gentamicin antibiotic action. EMBO J. 17:1998;6437-6448.
    • (1998) EMBO J. , vol.17 , pp. 6437-6448
    • Yoshizawa, S.1    Fourmy, D.2    Puglisi, J.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.