-
1
-
-
33646482468
-
Karyopherin flexibility in nucleocytoplasmic transport
-
Conti, E., C. Müller, and M. Stewart. 2006. Karyopherin flexibility in nucleocytoplasmic transport. Curr. Opin. Struct. Biol. 16:237-244.
-
(2006)
Curr. Opin. Struct. Biol
, vol.16
, pp. 237-244
-
-
Conti, E.1
Müller, C.2
Stewart, M.3
-
2
-
-
33847187076
-
Non-coding RNAs: Lessons from the small nuclear and small nucleolar RNAs
-
Matera, A., R. Terns, and M. Terns. 2007. Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs. Nat. Rev. Mol. Cell Biol. 8:209-220.
-
(2007)
Nat. Rev. Mol. Cell Biol
, vol.8
, pp. 209-220
-
-
Matera, A.1
Terns, R.2
Terns, M.3
-
3
-
-
0035370526
-
Spliceosomal UsnRNP biogenesis, structure and function
-
Will, C., and R. Lührmann. 2001. Spliceosomal UsnRNP biogenesis, structure and function. Curr. Opin. Cell Biol. 13:290-301.
-
(2001)
Curr. Opin. Cell Biol
, vol.13
, pp. 290-301
-
-
Will, C.1
Lührmann, R.2
-
4
-
-
33746827748
-
Trimethylguanosine nucleoside inhibits cross-linking between Snurportin 1 and m3G-capped U1 snRNA
-
Bahia, D., M. Bach-Elias, A. Aviñó , R. Eritja, and E. Darzynkiewicz. 2006. Trimethylguanosine nucleoside inhibits cross-linking between Snurportin 1 and m3G-capped U1 snRNA. Nucleosides Nucleotides Nucleic Acids. 25:909-923.
-
(2006)
Nucleosides Nucleotides Nucleic Acids
, vol.25
, pp. 909-923
-
-
Bahia, D.1
Bach-Elias, M.2
Aviñó, A.3
Eritja, R.4
Darzynkiewicz, E.5
-
5
-
-
22744441209
-
Structural basis for m3G-cap-mediated nuclear import of spliceosomal UsnRNPs by snurportin1
-
Strasser, A., A. Dickmanns, R. Lührmann, and R. Ficner. 2005. Structural basis for m3G-cap-mediated nuclear import of spliceosomal UsnRNPs by snurportin1. EMBO J. 24:2235-2243.
-
(2005)
EMBO J
, vol.24
, pp. 2235-2243
-
-
Strasser, A.1
Dickmanns, A.2
Lührmann, R.3
Ficner, R.4
-
7
-
-
0033954256
-
The Protein Data Bank
-
Berman, H., J. Westbrook, Z. Feng, G. Gilliland, T. Bhat, et al. 2000. The Protein Data Bank. Nucleic Acids Res. 28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
-
8
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang, J., P. Cieplak, and P. Kollman. 2000. How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 21:1049-1074.
-
(2000)
J. Comput. Chem
, vol.21
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.3
-
9
-
-
20544435097
-
Exploring the helix-coil transition via allatom equilibrium ensemble simulations
-
Sorin, E., and V. Pande. 2005. Exploring the helix-coil transition via allatom equilibrium ensemble simulations. Biophys. J. 88:2472-2493.
-
(2005)
Biophys. J
, vol.88
, pp. 2472-2493
-
-
Sorin, E.1
Pande, V.2
-
10
-
-
36048987314
-
AMBER force field parameters for the naturally occurring modified nucleosides in RNA
-
Aduri, R., B. Psciuk, P. Saro, H. Taniga, H. Schlegel, et al. 2007. AMBER force field parameters for the naturally occurring modified nucleosides in RNA. J. Chem. Theory Comput. 3:1464-1475.
-
(2007)
J. Chem. Theory Comput
, vol.3
, pp. 1464-1475
-
-
Aduri, R.1
Psciuk, B.2
Saro, P.3
Taniga, H.4
Schlegel, H.5
-
11
-
-
0037495965
-
Development of polyphosphate parameters for use with the AMBER force field
-
Meagher, K., L. Redman, and H. Carlson. 2003. Development of polyphosphate parameters for use with the AMBER force field. J. Comput. Chem. 24:1016-1025.
-
(2003)
J. Comput. Chem
, vol.24
, pp. 1016-1025
-
-
Meagher, K.1
Redman, L.2
Carlson, H.3
-
12
-
-
33846823909
-
Particle mesh Ewald: An N log (N) method for Ewald sums in large systems
-
Darden, T., D. York, and L. Pedersen. 1993. Particle mesh Ewald: an N log (N) method for Ewald sums in large systems. J. Chem. Phys. 98:10089-10092.
-
(1993)
J. Chem. Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
13
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H., J. Postma, W. van Gunsteren, A. DiNola, and J. Haak. 1984. Molecular dynamics with coupling to an external bath. J. Chem. Phys. 81:3684-3690.
-
(1984)
J. Chem. Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.1
Postma, J.2
van Gunsteren, W.3
DiNola, A.4
Haak, J.5
-
14
-
-
0000388705
-
LINCS: A linear constraint solver for molecular simulations
-
Hess, B., H. Bekker, H. Berendsen, and J. Fraaije. 1997. LINCS: a linear constraint solver for molecular simulations. J. Comput. Chem. 18:1463-1472.
-
(1997)
J. Comput. Chem
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.3
Fraaije, J.4
-
15
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W., J. Chandrasekhar, J. Madura, R. Impey, and M. Klein. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935.
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.1
Chandrasekhar, J.2
Madura, J.3
Impey, R.4
Klein, M.5
-
16
-
-
27344454932
-
GROMACS: Fast, flexible, and free
-
van der Spoel, D., E. Lindahl, B. Hess, G. Groenhof, A. Mark, et al. 2005. GROMACS: fast, flexible, and free. J. Comput. Chem. 26:1701-1718.
-
(2005)
J. Comput. Chem
, vol.26
, pp. 1701-1718
-
-
van der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.5
-
18
-
-
34250723399
-
Aqueous urea solutions: Structure, energetics, and urea aggregation
-
Stumpe, M., and H. Grubmüller. 2007. Aqueous urea solutions: structure, energetics, and urea aggregation. J. Phys. Chem. B. 111:6220-6228.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 6220-6228
-
-
Stumpe, M.1
Grubmüller, H.2
-
19
-
-
59849121675
-
Accuracy and convergence of free energy differences calculated from nonequilibrium switching processes
-
Goette, M., and H. Grubmüller. 2009. Accuracy and convergence of free energy differences calculated from nonequilibrium switching processes. J. Comput. Chem. 30:447-456.
-
(2009)
J. Comput. Chem
, vol.30
, pp. 447-456
-
-
Goette, M.1
Grubmüller, H.2
-
20
-
-
0004504539
-
Monte Carlo simulation of differences in free energies of hydration
-
Jorgensen, W., and C. Ravimohan. 1985. Monte Carlo simulation of differences in free energies of hydration. J. Chem. Phys. 83:3050-3054.
-
(1985)
J. Chem. Phys
, vol.83
, pp. 3050-3054
-
-
Jorgensen, W.1
Ravimohan, C.2
-
21
-
-
0023993998
-
The role of computer simulation techniques in protein engineering
-
van Gunsteren, W. 1988. The role of computer simulation techniques in protein engineering. Protein Eng. Des. Sel. 2:5-12.
-
(1988)
Protein Eng. Des. Sel
, vol.2
, pp. 5-12
-
-
van Gunsteren, W.1
-
22
-
-
0344417109
-
CRM1-mediated recycling of snurportin 1 to the cytoplasm
-
Paraskeva, E., E. Izaurralde, F. Bischoff, J. Huber, U. Kutay, et al. 1999. CRM1-mediated recycling of snurportin 1 to the cytoplasm. J. Cell Biol. 145:255-264.
-
(1999)
J. Cell Biol
, vol.145
, pp. 255-264
-
-
Paraskeva, E.1
Izaurralde, E.2
Bischoff, F.3
Huber, J.4
Kutay, U.5
-
23
-
-
9744248734
-
Architecture of CRM1/exportin1 suggests how cooperativity is achieved during formation of a nuclear export complex
-
Petosa, C., G. Schoehn, P. Askjaer, U. Bauer, M. Moulin, et al. 2004. Architecture of CRM1/exportin1 suggests how cooperativity is achieved during formation of a nuclear export complex. Mol. Cell. 16:761-775.
-
(2004)
Mol. Cell
, vol.16
, pp. 761-775
-
-
Petosa, C.1
Schoehn, G.2
Askjaer, P.3
Bauer, U.4
Moulin, M.5
-
24
-
-
33748518255
-
Comparison of multiple AMBER force fields and development of improved protein backbone parameters
-
Hornak, V., R. Abel, A. Okur, B. Strockbine, A. Roitberg, et al. 2006. Comparison of multiple AMBER force fields and development of improved protein backbone parameters. Proteins Struct. Funct. Bioinformatics. 65:712-725.
-
(2006)
Proteins Struct. Funct. Bioinformatics
, vol.65
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
-
25
-
-
34447575800
-
Free energy calculations using flexible-constrained, hard-constrained and non-constrained molecular dynamics simulations
-
Christen, M., C. Christ, and W. van Gunsteren. 2007. Free energy calculations using flexible-constrained, hard-constrained and non-constrained molecular dynamics simulations. ChemPhysChem. 8:1557-1564.
-
(2007)
ChemPhysChem
, vol.8
, pp. 1557-1564
-
-
Christen, M.1
Christ, C.2
van Gunsteren, W.3
-
26
-
-
0024999077
-
An essential signaling role for the m3G cap in the transport of U1 snRNP to the nucleus
-
Fischer, U., and R. Lührmann. 1990. An essential signaling role for the m3G cap in the transport of U1 snRNP to the nucleus. Science. 249: 786-790.
-
(1990)
Science
, vol.249
, pp. 786-790
-
-
Fischer, U.1
Lührmann, R.2
-
27
-
-
0025873549
-
Diversity in the signals required for nuclear accumulation of UsnRNPs and variety in the pathways of nuclear transport
-
Fischer, U. 1991. Diversity in the signals required for nuclear accumulation of UsnRNPs and variety in the pathways of nuclear transport. J. Cell Biol. 113:705-714.
-
(1991)
J. Cell Biol
, vol.113
, pp. 705-714
-
-
Fischer, U.1
|