Towards in vivo imaging of intramolecular fluorescence resonance energy transfer parameters

Journal of the Optical Society of America A: Optics and Image Science, and Vision

Volumn 26, Issue 8, 2009, Pages 1806-1814

  Gaind, Vaibhav ^a   Webb, Kevin J ^a   Kularatne, Sumith ^b   Bouman, Charles A ^a  

^a Purdue University   (United States)

^b Department of Chemistry ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FLUOROPHORES; RESONANCE; TOMOGRAPHY;

ALZHEIMER'S DISEASE; CELLULAR FUNCTION; DELETERIOUS EFFECTS; DIPOLE DIPOLE INTERACTIONS; DONOR AND ACCEPTOR; DONOR-ACCEPTORS; FLUORESCENCE RESONANCE ENERGY TRANSFER; IN-VITRO; IN-VIVO IMAGING; NEAR-SURFACE; NONRADIATIVE ENERGY TRANSFER; OPTICAL DIFFUSION TOMOGRAPHY; PROTEIN MISFOLDING; RIGID LINKERS; SCATTERING ENVIRONMENT; SCATTERING PROPERTY; UNDERLYING CAUSE;

ENERGY TRANSFER;

EID: 68849088221     PISSN: 10847529     EISSN: 15208532     Source Type: Journal    
DOI: 10.1364/JOSAA.26.001806     Document Type: Article

References (37)

1. T. Förster, "Zwischenmolekulare energiewanderung und fluoreszenze," Ann. Phys. 2, 55 (1948).
2. J. R. Lakowicz, Principles of Fluorescence Spectroscopy, 2nd ed. (Kluwer Academic, 1999).
3. R. D. Mitra, C. M. Silva, and D. C. Youvan, "Fluorescence resonance energy transfer between blue-emitting and red-shifted excitation derivatives of green fluorescent protein," Gene 173, 13-17 (1996).
4. Y. Suzuki, T. Yasunaga, R. Ohkura, T. Wakabayashi, and K. Sutoh, "Swing of the lever arm of a myosin motor at the isomerization and phosphate-release steps," Nature 396, 380-383 (1998).
5. M. Sato, T. Ozawa, K. Inukai, T. Asano, and Y. Umezawa, "Fluorescent indicators for imaging protein phosphorylation in single living cells," Nat. Biotechnol. 20, 287-294 (2002).
6. A. Miyawaki, J. Llopis, R. Heim, J. McCaffery, J. Adams, M. Ikura, and R. Tsien, "Fluorescent indicators for, Ca2+ based on green fluorescent proteins and calmodulin," Nature 388, 881-887 (1997).
7. N. Mahajan, K. Linder, G. Berry, G. Gordon, R. Heim, and B. Herman, "Bcl-2 and bax interactions in mitochondria probed with green fluorescence protein and fluorescence resonance energy transfer," Nat. Biotechnol. 16, 547-552 (1998).
8. E. Haas, "The study of protein folding and dynamics by determination of intramolecular distance distributions and their fluctuations using ensemble and single-molecule FRET measurement," Chem. Phys. 6, 858-870 (2005).
9. K. Truong and M. Ikura, "The use of FRET imaging technology to detect protein-protein interactions and protein conformational changes in vivo," Curr. Op. Struct. Biol. 11, 573-578 (2001).
10. C. Dobson, "The structural basis of protein folding and its links with human disease," Phil. Trans. R. Soc. Lond. B 356, 133-145 (2001).
11. A. Bullock and A. Fersht, "Rescuing the function of mutant p53," Nat. Rev. Cancer 1, 1 (2001).
12. J. Mills, J. Stone, D. Rubin, D. Melon, D. Okonkwo, and A. P. G. Helm, "Illuminating protein interactions in tissue using confocal and two-photon excitation fluorescent resonance energy transfer microscopy," J. Biomed. Opt. 8, 347-356 (2003).
13. R. Yasuda, C. Harvey, H. Zhong, A. Sobczyk, L. Aelst, and K. Svoboda, "Supersenstive ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging," Nature Neurosci. 9, 283-291 (2006).
14. D. Stockholm, M. Bartoli, G. Sillon, N. Bourg, J. Davoust, and I. Richard, "Imaging calpain protease activity by multiphoton FRET in living mice," J. Mol. Biol. 346, 215-222 (2005).
15. A. B. Milstein, S. Oh, J. S. Reynolds, K. J. Webb, C. A. Bouman, and R. P. Millane, "Three-dimensional Bayesian optical diffusion tomography with experimental data," Opt. Lett. 27, 95-97 (2002).
16. A. P. Gibson, J. C. Hebden, and S. R. Arridge, "Recent advances in diffuse optical imaging," Phys. Med. Biol. 50, R1-R43 (2005).
17. A. B. Milstein, S. Oh, K. J. Webb, C. A. Bouman, Q. Zhang, D. A. Boas, and R. P. Millane, "Fluorescence optical diffusion tomography," Appl. Opt. 42, 3081-3094 (2003).
18. S. Tyagi and F Kramer, "Molecular beacons: Probes that fluoresce upon hybridization," Nat. Biotechnol. 14, 303-308 (1996).
19. V. Ntziachristos, C. Tung, C. Bremer, and R. Weissleder, "Fluorescence molecular tomography resolves protease activity in vivo," Nat. Med. 8, 757-760 (2002).
20. S. Bernacchi and Y. Mely, "Exciton interaction in molecular beacons: a sensitive sensor for short range modifications of the nucleic acid structure," Nucleic Acids Res. 29, e62 (2001).
21. S. Marras, F Kramer, and S. Tyagi, "Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes," Nucleic Acids Res. 30, e122 (2002).
22. A. Milstein, J. Stott, S. Oh, D. Boas, R. Millane, C. Bouman, and K. Webb, "Fluorescence optical diffusion tomography using multiple-frequency data," J. Opt. Soc. Am. A 21, 1035-1049(2004).
23. J. C. Ye, K. J. Webb, C. A. Bouman, and R. P. Millane, "Optical diffusion tomography using iterative coordinate descent optimization in a Bayesian framework," J. Opt. Soc. Am. A 16, 2400-2412 (1999).
24. S. Oh, A. B. Milstein, R. P. Millane, C. A. Bouman, and K. J. Webb, "Source-detector calibration in three-dimensional Bayesian optical diffusion tomography," J. Opt. Soc. Am. A 19, 1983-1993 (2002).
25. J. C. Ye, C. A. Bouman, K. J. Webb, and R. P. Millane, "Nonlinear multigrid algorithms for Bayesian optical diffusion tomography," IEEE Trans. Image Process. 10, 909-922 (2001).
26. P. Schwille, S. Kummer, A. Heikal, W. Moerner, and W. Webb, "Fluorescence correlation spectroscopy reveals fast optical excitation-driven intramolecular dynamics of yellow fluorescent proteins," Proc. Natl. Acad. Sci. U.S.A. 97, 151-156 (2000).
27. www.microscopyu.com/tutorials/java/fluorescence/fpfret/ index.html.
28. J. C. Adams, "Mudpack: Multigrid portable fortran software for the efficient solution of linear elliptic partial differential equations," Appl. Math. Comput. 34, 113-146 (1989).
29. J. C. Adams, Multigrid Software for Elliptic Partial Differential Equations (National Center for Atmospheric Research, Boulder, Colorado, 1991).
30. J. Yang, H. Chen, I. Vlahov, J. Cheng, and P. Low, "Evaluation of disulfide reduction during receptor-mediated endocytosis by using FRET imaging," Proc. Natl. Acad. Sci. U.S.A. 103, 13872-13877 (2006).
31. http://www.edmundoptics.com/onlinecatalog/ displayproduct.cfm?productid= 1903.
32. G. Hale and M. Querry, "Optical constants of water in the 200 nm to 200 μm wavelength region," Appl. Opt. 12, 555-563 (1973).
33. R. Michels, F. Foschum, and A. Kienle, "Optical properties of fat emulsions," Opt. Express 16, 5907-5925 (2008).
34. http://probes.invitrogen.com/handbook/sections/0104.html.
35. L. Berg, D. W. McKeel, J. P. Miller, M. Storandt, E. H. Rubin, J. C. Morris, J. Baty, M. Coats, J. Norton, A. M. Goate, J. L. Price, M. Gearing, S. S. Mirra, and A. M. Saunders, "Clinicopatholigic studies in cognitively healthy aging and Alzheimer disease," Arch. Neurol. 55, 326-355 (1998).
36. B. Bacskai, J. Skoch, G. Hickey, R. Allen, and B. Hyman, "Fluorescence resonance energy transfer determinations using multiphoton fluorescence lifetime imaging microscopy to characterize amyloid-beta plaques," J. Biomed. Opt. 8, 368-375 (2003).
37. C. Dobson, "Protein folding and misfolding," Nature 426, 884-890 (2003).