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Volumn 29, Issue 13, 2020, Pages

Exciton interaction in molecular beacons: A sensitive sensor for short range modifications of the nucleic acid structure

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION SPECTROSCOPY; ARTICLE; CONTROLLED STUDY; DNA PROBE; FLUORESCENCE RESONANCE ENERGY TRANSFER; GEOMETRY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MOLECULAR BEACON; MOLECULAR INTERACTION; NUCLEIC ACID HYBRIDIZATION; NUCLEIC ACID STRUCTURE; PRIORITY JOURNAL; CHEMISTRY; CONFORMATION; DIMERIZATION; DNA DENATURATION; ENERGY TRANSFER; FLUORESCENCE; GENETIC PROCEDURES; GENETICS; HUMAN IMMUNODEFICIENCY VIRUS; LONG TERMINAL REPEAT; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; RNA PROBE; SPECTROSCOPY; TEMPERATURE;

EID: 0035408588     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/29.13.e62     Document Type: Article
Times cited : (110)

References (35)
  • 1
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: probes that fluoresce upon hybridization
    • Tyagi, S. and Kramer, F.R. (1996) Molecular beacons: probes that fluoresce upon hybridization. Nat. Biotechnol., 14, 303-308.
    • (1996) Nat. Biotechnol , vol.14 , pp. 303-308
    • Tyagi, S.1    Kramer, F.R.2
  • 2
    • 0032078362 scopus 로고    scopus 로고
    • Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNA
    • Leone, G., van Schijndel, H., van Gemen, B., Kramer, F.R. and Schoen, C.D. (1998)Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNA. Nucleic Acids Res., 26, 2150-2155.
    • (1998) Nucleic Acids Res , vol.26 , pp. 2150-2155
    • Leone, G.1    van Schijndel, H.2    van Gemen, B.3    Kramer, F.R.4    Schoen, C.D.5
  • 3
    • 0032578455 scopus 로고    scopus 로고
    • Real time detection of DNA.RNA hybridization in living cells
    • Sokol, D.L., Zhang, X., Lu, P. and Gewirtz, A.M. (1998) Real time detection of DNA.RNA hybridization in living cells. Proc. Natl Acad. Sci. USA, 95, 11538-11543.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 11538-11543
    • Sokol, D.L.1    Zhang, X.2    Lu, P.3    Gewirtz, A.M.4
  • 5
    • 0033620449 scopus 로고    scopus 로고
    • Designing a novel molecular beacon for surface-immobilized DNA hybridazation studies
    • Fang, X., Liu, X., Schuster, S. and Tan, W. (1999) Designing a novel molecular beacon for surface-immobilized DNA hybridazation studies. J. Am. Chem. Soc., 121, 2921-2922.
    • (1999) J. Am. Chem. Soc , vol.121 , pp. 2921-2922
    • Fang, X.1    Liu, X.2    Schuster, S.3    Tan, W.4
  • 7
    • 4644252101 scopus 로고    scopus 로고
    • Using molecular beacons as a sensitive fluorescence assay for enzymatic cleavage of single-stranded DNA
    • Li, J.J., Geyer, R. and Tan, W. (2000) Using molecular beacons as a sensitive fluorescence assay for enzymatic cleavage of single-stranded DNA. Nucleic Acids Res., 28, e52.
    • (2000) Nucleic Acids Res , vol.28 , pp. e52
    • Li, J.J.1    Geyer, R.2    Tan, W.3
  • 9
    • 0003468776 scopus 로고
    • Delocalized excitation and excitation transfer
    • Sinanoglu, O. (ed), Academic Press, New York, NY
    • Förster, Th. (1965) Delocalized excitation and excitation transfer. In Sinanoglu, O. (ed.), Modern Quantum Chemistry. Academic Press, New York, NY, Vol. III, pp. 93-137.
    • (1965) Modern Quantum Chemistry , vol.III , pp. 93-137
    • Förster, Th1
  • 10
    • 75449145408 scopus 로고
    • Energy transfer mechanisms and the molecular exciton model for molecular aggregates
    • Kasha, M. (1963) Energy transfer mechanisms and the molecular exciton model for molecular aggregates. Radiat. Res., 20, 55-71.
    • (1963) Radiat. Res , vol.20 , pp. 55-71
    • Kasha, M.1
  • 11
    • 0026288662 scopus 로고
    • Energy transfer, charge transfer and proton transfer in molecular composite systems
    • Kasha, M. (1991) Energy transfer, charge transfer and proton transfer in molecular composite systems. Basic Life Sci., 58, 231-251.
    • (1991) Basic Life Sci , vol.58 , pp. 231-251
    • Kasha, M.1
  • 12
    • 11644312351 scopus 로고
    • Electronic interactions and interchromophore excitation transfer
    • Scholes, D.S. and Ghiggino, K.P. (1994) Electronic interactions and interchromophore excitation transfer. J. Phys. Chem., 98, 4580-4590.
    • (1994) J. Phys. Chem , vol.98 , pp. 4580-4590
    • Scholes, D.S.1    Ghiggino, K.P.2
  • 13
    • 0028095520 scopus 로고
    • Negative electrospray ionization mass spectrometry of synthetic and chemically modified oligonucleotides
    • Potier, N., Van Dorsselaer, A., Cordier, Y., Roch, O. and Bischoff, R. (1994) Negative electrospray ionization mass spectrometry of synthetic and chemically modified oligonucleotides. Nucleic Acids Res., 22, 3895-3903.
    • (1994) Nucleic Acids Res , vol.22 , pp. 3895-3903
    • Potier, N.1    Van Dorsselaer, A.2    Cordier, Y.3    Roch, O.4    Bischoff, R.5
  • 16
    • 0027479628 scopus 로고
    • Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains
    • Baudin, F., Marquet, R., Isel, C., Darlix, J.L., Ehresmann, B. and Ehresmann, C. (1993) Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains. J. Mol. Biol., 229, 382-397.
    • (1993) J. Mol. Biol , vol.229 , pp. 382-397
    • Baudin, F.1    Marquet, R.2    Isel, C.3    Darlix, J.L.4    Ehresmann, B.5    Ehresmann, C.6
  • 18
    • 0006744353 scopus 로고
    • Elevated levels of mRNA can account for the trans-activation of human immunodeficiency virus
    • Peterlin, B.M., Luciw, P.A., Barr, P.J. and Walker, M.D. (1986) Elevated levels of mRNA can account for the trans-activation of human immunodeficiency virus. Proc. Natl Acad. Sci. USA, 83, 9734-9738.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 9734-9738
    • Peterlin, B.M.1    Luciw, P.A.2    Barr, P.J.3    Walker, M.D.4
  • 19
    • 0023939651 scopus 로고
    • Transcriptional but not translational regulation of HIV-1 by the tat gene product
    • Rice, A.P. and Mathews, M.B. (1988) Transcriptional but not translational regulation of HIV-1 by the tat gene product. Nature, 332, 551-553.
    • (1988) Nature , vol.332 , pp. 551-553
    • Rice, A.P.1    Mathews, M.B.2
  • 20
    • 0032922727 scopus 로고    scopus 로고
    • An intact TAR element and cytoplasmic localization are necessary for efficient packaging of human immunodeficiency virus type 1 genomic RNA
    • Helga-Maria, C., Hammarskjold, M.L. and Rekosh, D. (1999) An intact TAR element and cytoplasmic localization are necessary for efficient packaging of human immunodeficiency virus type 1 genomic RNA. J. Virol., 73, 4127-4135.
    • (1999) J. Virol , vol.73 , pp. 4127-4135
    • Helga-Maria, C.1    Hammarskjold, M.L.2    Rekosh, D.3
  • 21
    • 0000333554 scopus 로고    scopus 로고
    • Evidence for a unique mechanism of strand transfer from the transactivation response region of HIV-1
    • Kim, J.K., Palaniappan, C., Wu, W., Fay, P.J. and Bambara, R.A. (1997) Evidence for a unique mechanism of strand transfer from the transactivation response region of HIV-1. J. Biol. Chem., 272, 16769-16777.
    • (1997) J. Biol. Chem , vol.272 , pp. 16769-16777
    • Kim, J.K.1    Palaniappan, C.2    Wu, W.3    Fay, P.J.4    Bambara, R.A.5
  • 22
    • 0031007620 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 nucleocapsid protein promotes efficient strand transfer and specific viral DNA synthesis by inhibiting TARdependent self-priming from minus-strand strong-stop DNA
    • Guo, J., Henderson, L.E., Bess, J., Kane, B. and Levin, J.G. (1997) Human immunodeficiency virus type 1 nucleocapsid protein promotes efficient strand transfer and specific viral DNA synthesis by inhibiting TARdependent self-priming from minus-strand strong-stop DNA. J. Virol., 71, 5178-5188.
    • (1997) J. Virol , vol.71 , pp. 5178-5188
    • Guo, J.1    Henderson, L.E.2    Bess, J.3    Kane, B.4    Levin, J.G.5
  • 23
    • 0034599374 scopus 로고    scopus 로고
    • Molecular beacons: a novel DNA probe for nucleic acid and protein studies
    • Tan, W., Fang, X., Li, J. and Liu, X. (2000) Molecular beacons: a novel DNA probe for nucleic acid and protein studies. Chemistry, 6, 1107-1111.
    • (2000) Chemistry , vol.6 , pp. 1107-1111
    • Tan, W.1    Fang, X.2    Li, J.3    Liu, X.4
  • 24
    • 0029910914 scopus 로고    scopus 로고
    • Profluorescent protease substrates: intramolecular dimers described by the exciton model
    • Packard, B.Z., Toptygin, D.D., Komoriya, A. and Brand, L. (1996) Profluorescent protease substrates: intramolecular dimers described by the exciton model. Proc. Natl Acad. Sci. USA, 93, 11640-11645.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 11640-11645
    • Packard, B.Z.1    Toptygin, D.D.2    Komoriya, A.3    Brand, L.4
  • 25
    • 0031673049 scopus 로고    scopus 로고
    • Intramolecular resonance dipole-dipole interactions in a profluorescent protease substrate
    • Packard, B.Z., Toptygin, D.D., Komoriya, A. and Brand, L. (1998) Intramolecular resonance dipole-dipole interactions in a profluorescent protease substrate. J. Phys. Chem. B, 102, 752-758.
    • (1998) J. Phys. Chem. B , vol.102 , pp. 752-758
    • Packard, B.Z.1    Toptygin, D.D.2    Komoriya, A.3    Brand, L.4
  • 26
    • 0029900789 scopus 로고    scopus 로고
    • Conformational transitions monitored for single molecules in solution
    • Edman, L., Mets, U. and Rigler, R. (1996) Conformational transitions monitored for single molecules in solution. Proc. Natl Acad. Sci. USA, 93, 6710-6715.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 6710-6715
    • Edman, L.1    Mets, U.2    Rigler, R.3
  • 27
    • 0001582524 scopus 로고    scopus 로고
    • Structural characteristics of fluorophores that form intramolecular H-type dimers in a protease substrate
    • Packard, B.Z., Komoriya, A., Toptygin, D.D. and Brand, L. (1997) Structural characteristics of fluorophores that form intramolecular H-type dimers in a protease substrate. J. Phys. Chem. B, 101, 5070-5074.
    • (1997) J. Phys. Chem. B , vol.101 , pp. 5070-5074
    • Packard, B.Z.1    Komoriya, A.2    Toptygin, D.D.3    Brand, L.4
  • 28
    • 0001526496 scopus 로고    scopus 로고
    • Ratiometric analysis of single-molecule fluorescence resonance energy transfer using logical combinations of threshold criteria: a study of 12-mer DNA
    • Ying, L., Wallace, M.I., Balasubramanian, S. and Klenerman, D. (2000) Ratiometric analysis of single-molecule fluorescence resonance energy transfer using logical combinations of threshold criteria: a study of 12-mer DNA. J. Phys. Chem. B, 104, 5171-5178.
    • (2000) J. Phys. Chem. B , vol.104 , pp. 5171-5178
    • Ying, L.1    Wallace, M.I.2    Balasubramanian, S.3    Klenerman, D.4
  • 29
    • 0001278636 scopus 로고
    • Aggregation phenomena in xanthene dyes
    • Valdes-Aguilera, O. and Neckers, D.C. (1989) Aggregation phenomena in xanthene dyes. Acc. Chem. Res., 22, 171-177.
    • (1989) Acc. Chem. Res , vol.22 , pp. 171-177
    • Valdes-Aguilera, O.1    Neckers, D.C.2
  • 31
    • 36849126670 scopus 로고
    • Coupling strength for resonance transfer of electronic energy in Van der Waals solids
    • Simpson, W.T. and Peterson, D.L. (1957) Coupling strength for resonance transfer of electronic energy in Van der Waals solids. J. Chem. Phys., 26, 588-593.
    • (1957) J. Chem. Phys , vol.26 , pp. 588-593
    • Simpson, W.T.1    Peterson, D.L.2
  • 32
    • 37049052477 scopus 로고
    • Isosbestic points
    • Cohen, M.D. and Fischer, E. (1962) Isosbestic points. J. Chem. Soc., 2, 3044-3052.
    • (1962) J. Chem. Soc , vol.2 , pp. 3044-3052
    • Cohen, M.D.1    Fischer, E.2
  • 34
    • 0028295796 scopus 로고
    • Resonance energy transfer: methods and applications
    • Wu, P. and Brand, L. (1994) Resonance energy transfer: methods and applications. Anal. Biochem., 218, 1-13.
    • (1994) Anal. Biochem , vol.218 , pp. 1-13
    • Wu, P.1    Brand, L.2
  • 35
    • 0034622638 scopus 로고    scopus 로고
    • A mechanism for plus-strand transfer enhancement by the HIV-1 nucleocapsid protein during reverse transcription
    • Johnson, P.E., Turner, R.B., Wu, Z.R., Hairston, L., Guo, J., Levin, J.G. and Summers, M.F. (2000) A mechanism for plus-strand transfer enhancement by the HIV-1 nucleocapsid protein during reverse transcription. Biochemistry, 39, 9084-9091.
    • (2000) Biochemistry , vol.39 , pp. 9084-9091
    • Johnson, P.E.1    Turner, R.B.2    Wu, Z.R.3    Hairston, L.4    Guo, J.5    Levin, J.G.6    Summers, M.F.7


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