Structure-function correlation of micro1 for micromere specification in sea urchin embryos

Mechanisms of Development

Volumn 126, Issue 8-9, 2009, Pages 611-623

  Yamazaki, Atsuko ^a   Ki, Sewon ^b   Kokubo, Tetsuro ^b   Yamaguchi, Masaaki ^a  

^a KANAZAWA UNIVERSITY   (Japan)

^b YOKOHAMA CITY UNIVERSITY   (Japan)

Author keywords

Eh1; Gene regulatory network; HesC; Homeodomain; Paired like class; Pmar1; Repressor; Sea urchin

Indexed keywords

DNA BINDING PROTEIN; GENE PRODUCT; MESSENGER RNA; MICRO1 PROTEIN; MUTANT PROTEIN; PROTEIN ALX1; PROTEIN ETS1; PROTEIN HESC; PROTEIN TBR; REPRESSOR PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; CORRELATIONAL STUDY; EMBRYO DEVELOPMENT; EMBRYONIC STRUCTURES; GENE EXPRESSION PROFILING; GENE MUTATION; GENE REPRESSION; GENE SEQUENCE; GENE TARGETING; MESENCHYME CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN MOTIF; PROTEIN STRUCTURE; SEA URCHIN;

AMINO ACID SEQUENCE; ANIMALS; CLONING, MOLECULAR; DIMERIZATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENES, REGULATOR; MODELS, BIOLOGICAL; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHENOTYPE; PROTEIN STRUCTURE, TERTIARY; REPRESSOR PROTEINS; SEA URCHINS; SEQUENCE HOMOLOGY, AMINO ACID;

ECHINOIDEA;

EID: 68349104297     PISSN: 09254773     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mod.2009.06.1083     Document Type: Article

References (44)

1. Caronia G., Goodman F.R., McKeown C.M.E., Scambler P.J., and Zappavigna V. An I47L substitution in the HOXD13 homeodomain causes a novel human limb malformation by producing a selective loss of function. Development 130 (2003) 1701-1712
2. Cavalieri V., Di Bernardo M., Anello L., and Spinelli G. Cis-Regulatory sequences driving the expression of the Hbox12 homeobox-containing gene in the presumptive aboral ectoderm territory of the Paracentrotus lividus sea urchin embryo. Dev. Biol. 321 (2008) 455-469
3. Cho K.W.Y., Blumberg B., Steinbeisser H., and De Robertis E.M. Molecular nature of Spemann's organizer: the role of the Xenopus homeobox gene goosecoid. Cell 67 (1991) 1111-1120
4. Copley R.R. The EH1 motif in metazoan transcription factors. BMC Genomics 6 (2005) 169
5. Davidson E.H., Rast J.P., Oliveri P., Ransick A., Calestani C., Yuh C., Minokawa T., Amore G., Hinman V., Arenas-Mena C., Otim O., Brown C.T., Livi C.B., Lee P.Y., Revilla R., Rust A.G., Pan Z.J., Schilstra M.J., Clarke P.J.C., Arnone M.I., Rowen L., Cameron R.A., McClay D.R., Hood L., and Bolouri H. A genomic regulatory network for development. Science 295 (2002) 1669-1678
6. Di Bernardo M., Russo R., Oliveri P., Melfi R., and Spinelli G. Homeobox-containing gene transiently expressed in a spatially restricted pattern in the early sea urchin embryo. Proc. Natl. Acad. Sci. USA 92 (1995) 8180-8184
7. Dingwall C., and Laskey R.A. Nuclear targeting sequences - a consensus?. Trends Biochem. Sci. 16 (1991) 478-481
8. Ettensohn C.A., Illies M.R., Oliveri P., and De Jong D.L. Alx1, a member of the Cart1/Alx3/Alx4 subfamily of paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo. Development 130 (2003) 2917-2928
9. Ettensohn C.A., Kitazawa C., Cheers M.S., Leonard J.D., and Sharma T. Gene regulatory networks and developmental plasticity in the early sea urchin embryo: alternative deployment of the skeletogenic gene regulatory network. Development 134 (2007) 3077-3087
10. Fuchikami T., Mitsunaga-Nakatsubo K., Amemiya S., Hosomi T., Watanabe T., Kurokawa D., Kataoka M., Harada Y., Satoh N., Kusunoki S., Takata K., Shimotori T., Yamamoto T., Sakamoto N., Shimada H., and Akasaka K. T-brain homologue (HpTb) is involved in the archenteron induction signals of micromere descendant cells in the sea urchin embryo. Development 129 (2002) 5205-5216
11. Furukawa K., Iioka T., Morishita M., Yamaguchi A., Shindo H., Namba H., Yamashita S., and Tsukazaki T. Functional domains of paired-like homeoprotein Cart1 and the relationship between dimerization and transcription activity. Genes Cells 7 (2002) 1135-1147
12. Gan L., Wessel G.M., and Klein W.H. Regulatory elements from the related Spec genes of Strongylocentrotus purpuratus yield different spatial patterns with a lacZ reporter gene. Dev. Biol. 142 (1990) 346-359
13. Goldstein R.E., Cook O., Dinur T., Pisanté A., Karandikar U.C., Bidwai A., and Paroush Z. An eh1-like motif in Odd-skipped mediates recruitment of Groucho and repression in vivo. Mol. Cell. Biol. 25 (2005) 10711-10720
14. Ho S.N., Hunt H.D., Horton R.M., Pullen J.K., and Pease L.R. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77 (1989) 51-59
15. Hörstadius S. Experimental Embryology of Echinoderms (1973), Clarendon Press, Oxford
16. Jiménez G., Paroush Z., and Ish-Horowicz D. Groucho acts as a corepressor for a subset of negative regulators, including Hairy and Engrailed. Genes Dev. 11 (1997) 3072-3082
17. Jiménez G., Verrijzer C.P., and Ish-Horowicz D. A conserved motif in goosecoid mediates groucho-dependent repression in Drosophila embryos. Mol. Cell. Biol. 19 (1999) 2080-2087
18. Kitamura K., Nishimura Y., Kubotera N., Higuchi Y., and Yamaguchi M. Transient activation of the micro1 homeobox gene family in the sea urchin (Hemicentrotus pulcherrimus) micromere. Dev. Genes Evol. 212 (2002) 1-10
19. Kurokawa D., Kitajima T., Mitsunaga-Nakatsubo K., Amemiya S., Shimada H., and Akasaka K. HpEts, an ets-related transcription factor implicated in primary mesenchyme cell differentiation in the sea urchin embryo. Mech. Dev. 80 (1999) 41-52
20. Mailhos C., André S., Mollereau B., Goriely A., Hemmati-Brivanlou A., and Desplan C. Drosophila Goosecoid requires a conserved heptapeptide for repression of paired-class homeoprotein activators. Development 125 (1998) 937-947
21. Martin S.R., Bayley P.M., Brown S.E., Porumb T., Zhang M., and Ikura M. Spectroscopic characterization of a high-affinity calmodulin-target peptide hybrid molecule. Biochemistry 35 (1996) 3508-3517
22. Minokawa T., Rast J.P., Arenas-Mena C., Franco C.B., and Davidson E.H. Expression patterns of four different regulatory genes that function during sea urchin development. Gene Expr. Patterns 4 (2004) 449-456
23. Muhr J., Andersson E., Persson M., Jessell T.M., and Ericson J. Groucho-mediated transcriptional repression establishes progenitor cell pattern and neuronal fate in the ventral neural tube. Cell 104 (2001) 861-873
24. Nishimura Y., Sato T., Morita Y., Yamazaki A., Akasaka K., and Yamaguchi M. Structure, regulation, and function of micro1 in the sea urchin Hemicentrotus pulcherrimus. Dev. Genes Evol. 214 (2004) 525-536
25. Ochiai H., Sakamoto N., Moriyama A., Akasaka K., and Yamamoto T. Analysis of cis-regulatory elements controlling spatio-temporal expression of T-brain gene in sea urchin, Hemicentrotus pulcherrimus. Mech. Dev. 125 (2008) 2-17
26. Okazaki K. Spicule formation by isolated micromeres of the sea urchin embryo. Am. Zool. 15 (1975) 567-581
27. Oliveri P., Carrick D.M., and Davidson E.H. A regulatory gene network that directs micromere specification in the sea urchin embryo. Dev. Biol. 246 (2002) 209-228
28. Oliveri P., Davidson E.H., and McClay D.R. Activation of pmar1 controls specification of micromeres in the sea urchin embryo. Dev. Biol. 258 (2003) 32-43
29. Oliveri P., Tu Q., and Davidson E.H. Global regulatory logic for specification of an embryonic cell lineage. Proc. Natl. Acad. Sci. USA 105 (2008) 5955-5962
30. Paroush Z., Finley R.L., Kidd T., Wainwright S.M., Ingham P.W., Brent R., and Ish-Horowicz D. Groucho is required for Drosophila neurogenesis, segmentation, and sex determination and interacts directly with hairy-related bHLH proteins. Cell 79 (1994) 805-815
31. Ransick A., and Davidson E.H. A complete second gut induced by transplanted micromeres in the sea urchin embryo. Science 259 (1993) 1134-1138
32. Revilla-i-Domingo R., Oliveri P., and Davidson E.H. A missing link in the sea urchin embryo gene regulatory network: hesC and double-negative specification of micromeres. Proc. Natl. Acad. Sci. USA 104 (2007) 12383-12388
33. Rizzo F., Fernandez-Serra M., Squarzoni P., Archimandritis A., and Arnone M.I. Identification and developmental expression of the ets gene family in the sea urchin (Strongylocentrotus purpuratus). Dev. Biol. 300 (2006) 35-48
34. Röttinger E., Besnardeau L., and Lepage T. A Raf/MEK/ERK signaling pathway is required for development of the sea urchin embryo micromere lineage through phosphorylation of the transcription factor Ets. Development 131 (2003) 1075-1087
35. Sea Urchin Genome Sequencing Consortium: Sodergren, E., Weinstock, G.M., Davidson, E.H., Cameron, R.A., Gibbs, R.A., Angerer, R.C., Angerer, L.M., Arnone, M.I., Burgess, D.R., Burke, R.D. et al., 2006. The genome of the sea urchin Strongylocentrotus purpuratus. Science 314, 941-952.
36. Shimizu T., Yamanaka Y., Nojima H., Yabe T., Hibi M., and Hirano T. A novel repressor-type homeobox gene, ved, is involved in dharma/bozozok-mediated dorsal organizer formation in zebrafish. Mech. Dev. 118 (2002) 125-138
37. Shoguchi E., Tokuoka M., and Kominami T. In situ screening for genes expressed preferentially in secondary mesenchyme cells of sea urchin embryos. Dev. Genes Evol. 212 (2002) 407-418
38. Smith J., and Davidson E.H. Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo. Proc. Natl. Acad. Sci. USA 105 (2008) 20089-20094
39. Smith S.T., and Jaynes J.B. A conserved region of engrailed, shared among all en-, gsc-, Nk1-, Nk2- and msh-class homeoproteins, mediates active transcriptional repression in vivo. Development 122 (1996) 3141-3150
40. Sweet H.C., Gehring M., and Ettensohn C.A. LvDelta is a mesoderm-inducing signal in the sea urchin embryo and can endow blastomeres with organizer-like properties. Development 129 (2002) 1945-1955
41. Wilson D., Sheng G., Lecuit T., Dostatni N., and Desplan C. Cooperative dimerization of paired class homeo domains on DNA. Genes Dev. 7 (1993) 2120-2134
42. Wilson D.S., Guenther B., Desplan C., and Kuriyan J. High resolution crystal structure of a paired (Pax) class cooperative homeodomain dimer on DNA. Cell 82 (1995) 709-719
43. Wu S., and McClay D.R. The Snail repressor is required for PMC ingression in the sea urchin embryo. Development 134 (2007) 1061-1070
44. Yamazaki A., Kawabata R., Shiomi K., Amemiya S., Sawaguchi M., Mitsunaga-Nakatsubo K., and Yamaguchi M. The micro1 gene is necessary and sufficient for micromere differentiation and mid/hindgut-inducing activity in the sea urchin embryo. Dev. Genes Evol. 215 (2005) 450-459