-
1
-
-
0004002033
-
Numerical methods that work
-
The Mathematical Association of America, Washington, DC
-
Acton F.S. Numerical methods that work. Minimum Methods (1990), The Mathematical Association of America, Washington, DC 448-476
-
(1990)
Minimum Methods
, pp. 448-476
-
-
Acton, F.S.1
-
2
-
-
36749088906
-
Determining the architectures of macromolecular assemblies
-
Alber F., Dokudovskaya S., Veenhoff L.M., Zhang W., Kipper J., Devos D., Suprato A., Karni-Schmidt O., Williams R., Chait B.T., et al. Determining the architectures of macromolecular assemblies. Nature 450 (2007) 683-694
-
(2007)
Nature
, vol.450
, pp. 683-694
-
-
Alber, F.1
Dokudovskaya, S.2
Veenhoff, L.M.3
Zhang, W.4
Kipper, J.5
Devos, D.6
Suprato, A.7
Karni-Schmidt, O.8
Williams, R.9
Chait, B.T.10
-
3
-
-
38949147131
-
Characterization of the resting MscS: modeling and analysis of the closed bacterial mechanosensitive channel of small conductance
-
Anishkin A., Akitake B., and Sukharev S. Characterization of the resting MscS: modeling and analysis of the closed bacterial mechanosensitive channel of small conductance. Biophys. J. 94 (2008) 1252-1266
-
(2008)
Biophys. J.
, vol.94
, pp. 1252-1266
-
-
Anishkin, A.1
Akitake, B.2
Sukharev, S.3
-
4
-
-
0031565726
-
An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors
-
Baldwin J.M., Schertler G.F., and Unger V.M. An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors. J. Mol. Biol. 272 (1997) 144-164
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 144-164
-
-
Baldwin, J.M.1
Schertler, G.F.2
Unger, V.M.3
-
5
-
-
35648943768
-
Toward high-resolution prediction and design of transmembrane helical protein structures
-
Barth P., Schonbrun J., and Baker D. Toward high-resolution prediction and design of transmembrane helical protein structures. Proc. Natl. Acad. Sci. USA 104 (2007) 15682-15687
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 15682-15687
-
-
Barth, P.1
Schonbrun, J.2
Baker, D.3
-
6
-
-
18344369377
-
Modeling membrane proteins based on low resolution electron microscopy: a template for the TM domains of the oxalate transporter OxlT
-
Beuming T., and Weinstein H. Modeling membrane proteins based on low resolution electron microscopy: a template for the TM domains of the oxalate transporter OxlT. Protein Eng. Des. Sel. 18 (2005) 2613-2627
-
(2005)
Protein Eng. Des. Sel.
, vol.18
, pp. 2613-2627
-
-
Beuming, T.1
Weinstein, H.2
-
7
-
-
0031563818
-
Helix packing in membrane proteins
-
Bowie J.U. Helix packing in membrane proteins. J. Mol. Biol. 272 (1997) 780-789
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 780-789
-
-
Bowie, J.U.1
-
8
-
-
28444488355
-
Solving the membrane protein folding problem
-
Bowie J.U. Solving the membrane protein folding problem. Nature 438 (2005) 581-589
-
(2005)
Nature
, vol.438
, pp. 581-589
-
-
Bowie, J.U.1
-
9
-
-
34147208836
-
Retraction
-
Chang G., Roth C.B., Reyes C.L., Pornillos O., Chen Y.J., and Chen A.P. Retraction. Science 314 (2006) 1875
-
(2006)
Science
, vol.314
, pp. 1875
-
-
Chang, G.1
Roth, C.B.2
Reyes, C.L.3
Pornillos, O.4
Chen, Y.J.5
Chen, A.P.6
-
10
-
-
0042931286
-
Sequence motifs, polar interactions and conformational changes in helical membrane proteins
-
Curran A.R., and Engelman D.M. Sequence motifs, polar interactions and conformational changes in helical membrane proteins. Curr. Opin. Struct. Biol. 13 (2003) 412-417
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 412-417
-
-
Curran, A.R.1
Engelman, D.M.2
-
11
-
-
0038499536
-
Sequence context strongly modulates association of polar residues in transmembrane helices
-
Dawson J.P., Melnyk R.A., Deber C.M., and Engelman D.M. Sequence context strongly modulates association of polar residues in transmembrane helices. J. Mol. Biol. 331 (2003) 255-262
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 255-262
-
-
Dawson, J.P.1
Melnyk, R.A.2
Deber, C.M.3
Engelman, D.M.4
-
12
-
-
0037379072
-
How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles
-
DeGrado W., Gratkowski H., and Lear J.D. How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles. Protein Sci. 12 (2003) 647-665
-
(2003)
Protein Sci.
, vol.12
, pp. 647-665
-
-
DeGrado, W.1
Gratkowski, H.2
Lear, J.D.3
-
14
-
-
0030043489
-
Cation-pi interactions in chemistry and biology: a new view of Benzene, Phe, Tyr, and Trp
-
Dougherty D. Cation-pi interactions in chemistry and biology: a new view of Benzene, Phe, Tyr, and Trp. Science 271 (1996) 163-168
-
(1996)
Science
, vol.271
, pp. 163-168
-
-
Dougherty, D.1
-
15
-
-
33646078118
-
The stability of transmembrane helix interactions measured in a biological membrane
-
Finger C., Volkmer T., Prodohl A., Otzen D.E., Engelman D.M., and Schneider D. The stability of transmembrane helix interactions measured in a biological membrane. J. Mol. Biol. 358 (2006) 1221-1228
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 1221-1228
-
-
Finger, C.1
Volkmer, T.2
Prodohl, A.3
Otzen, D.E.4
Engelman, D.M.5
Schneider, D.6
-
16
-
-
0036382758
-
A novel scoring function for predicting the conformations of tightly packed pairs of transmembrane alpha-helices
-
Fleishman S.J., and Ben-Tal N. A novel scoring function for predicting the conformations of tightly packed pairs of transmembrane alpha-helices. J. Mol. Biol. 321 (2002) 363-378
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 363-378
-
-
Fleishman, S.J.1
Ben-Tal, N.2
-
18
-
-
0035969998
-
Polar side chains drive the association of model transmembrane peptides
-
Gratkowski H., Lear J.D., and DeGrado W.F. Polar side chains drive the association of model transmembrane peptides. Proc. Natl. Acad. Sci. USA 98 (2001) 880-885
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 880-885
-
-
Gratkowski, H.1
Lear, J.D.2
DeGrado, W.F.3
-
19
-
-
0033515557
-
Heptad motif of leucine residues found in membrane proteins can drive self-assembly of artificial transmembrane segments
-
Gurezka R., Laage R., Brosig B., and Langosch D.A. Heptad motif of leucine residues found in membrane proteins can drive self-assembly of artificial transmembrane segments. J. Biol. Chem. 274 (1999) 9265-9270
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 9265-9270
-
-
Gurezka, R.1
Laage, R.2
Brosig, B.3
Langosch, D.A.4
-
20
-
-
0000176654
-
Stability of "salt bridges" in membrane proteins
-
Honig B.H., and Hubbell W.L. Stability of "salt bridges" in membrane proteins. Proc. Natl. Acad. Sci. USA 81 (1984) 5412-5416
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 5412-5416
-
-
Honig, B.H.1
Hubbell, W.L.2
-
21
-
-
46249089993
-
Modest stabilization by most hydrogen-bonded side chain interactions in membrane proteins
-
Joh N.H., Min A., Faham S., Whitelegge J.P., Yang D., Woods V.L., and Bowie J.U. Modest stabilization by most hydrogen-bonded side chain interactions in membrane proteins. Nature 453 (2008) 1266-1270
-
(2008)
Nature
, vol.453
, pp. 1266-1270
-
-
Joh, N.H.1
Min, A.2
Faham, S.3
Whitelegge, J.P.4
Yang, D.5
Woods, V.L.6
Bowie, J.U.7
-
22
-
-
34547857813
-
Aromatic and cation-pi interactions enhance helix-helix association in a membrane environment
-
Johnson R.M., Hecht K., and Deber C.M. Aromatic and cation-pi interactions enhance helix-helix association in a membrane environment. Biochemistry 46 (2007) 9208-9214
-
(2007)
Biochemistry
, vol.46
, pp. 9208-9214
-
-
Johnson, R.M.1
Hecht, K.2
Deber, C.M.3
-
23
-
-
34548721011
-
Computational prediction of atomic structures of helical membrane proteins aided by EM maps
-
Kovacs J.A., Yeager M., and Abagyan R. Computational prediction of atomic structures of helical membrane proteins aided by EM maps. Biophys. J. 93 (2007) 1950-1959
-
(2007)
Biophys. J.
, vol.93
, pp. 1950-1959
-
-
Kovacs, J.A.1
Yeager, M.2
Abagyan, R.3
-
24
-
-
0028086531
-
Specificity and promiscuity in membrane protein interactions
-
Lemmon M.A., and Engelman D.M. Specificity and promiscuity in membrane protein interactions. Q. Rev. Biophys. 27 (1994) 157-218
-
(1994)
Q. Rev. Biophys.
, vol.27
, pp. 157-218
-
-
Lemmon, M.A.1
Engelman, D.M.2
-
25
-
-
0034817286
-
Structure of the KcsA channel intracellular gate in the open state
-
Liu Y.S., Sompornpisut P., and Perozo E. Structure of the KcsA channel intracellular gate in the open state. Nat. Struct. Biol. 8 (2001) 883-887
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 883-887
-
-
Liu, Y.S.1
Sompornpisut, P.2
Perozo, E.3
-
26
-
-
0028304962
-
Satisfying hydrogen bonding potential in proteins
-
McDonald I.K., and Thornton J.M. Satisfying hydrogen bonding potential in proteins. J. Mol. Biol. 238 (1994) 777-793
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 777-793
-
-
McDonald, I.K.1
Thornton, J.M.2
-
27
-
-
37849045152
-
Are aromatic carbon donor hydrogen bonds linear in proteins?
-
Nanda V., and Schmiedekamp A. Are aromatic carbon donor hydrogen bonds linear in proteins?. Proteins 70 (2008) 489-497
-
(2008)
Proteins
, vol.70
, pp. 489-497
-
-
Nanda, V.1
Schmiedekamp, A.2
-
28
-
-
0037194760
-
Open channel structure of MscL and the gating mechanism of mechanosensitive channels
-
Perozo E., Cortes D.M., Sompornpisut P., Kloda A., and Martinac B. Open channel structure of MscL and the gating mechanism of mechanosensitive channels. Nature 418 (2002) 942-948
-
(2002)
Nature
, vol.418
, pp. 942-948
-
-
Perozo, E.1
Cortes, D.M.2
Sompornpisut, P.3
Kloda, A.4
Martinac, B.5
-
29
-
-
0025249842
-
Membrane protein folding and oligomerization: the two-stage model
-
Popot J.L., and Engelman D.M. Membrane protein folding and oligomerization: the two-stage model. Biochemistry 29 (1990) 4031-4037
-
(1990)
Biochemistry
, vol.29
, pp. 4031-4037
-
-
Popot, J.L.1
Engelman, D.M.2
-
30
-
-
0034711953
-
The GxxxG motif: a framework for transmembrane helix-helix association
-
Russ W.P., and Engelman D.M. The GxxxG motif: a framework for transmembrane helix-helix association. J. Mol. Biol. 296 (2000) 911-919
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 911-919
-
-
Russ, W.P.1
Engelman, D.M.2
-
31
-
-
27144549973
-
Sequential triage of transmembrane segments by Sec61alpha during biogenesis of a native multispanning membrane protein
-
Sadlish H., Pitonzo D., Johnson A.E., and Skach W.R. Sequential triage of transmembrane segments by Sec61alpha during biogenesis of a native multispanning membrane protein. Nat. Struct. Mol. Biol. 12 (2005) 870-878
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 870-878
-
-
Sadlish, H.1
Pitonzo, D.2
Johnson, A.E.3
Skach, W.R.4
-
32
-
-
4644322798
-
Optimal bundling of transmembrane helices using sparse distance constraints
-
Sale K., Faulon J.L., Gray G.A., Schoeniger J.S., and Young M.M. Optimal bundling of transmembrane helices using sparse distance constraints. Protein Sci. 13 (2004) 2613-2627
-
(2004)
Protein Sci.
, vol.13
, pp. 2613-2627
-
-
Sale, K.1
Faulon, J.L.2
Gray, G.A.3
Schoeniger, J.S.4
Young, M.M.5
-
33
-
-
34547131849
-
Specificity in transmembrane helix-helix interaction mediated by aromatic residues
-
Sal-Man N., Gerber D., Bloch I., and Shai Y. Specificity in transmembrane helix-helix interaction mediated by aromatic residues. J. Biol. Chem. 282 (2007) 19753-19761
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 19753-19761
-
-
Sal-Man, N.1
Gerber, D.2
Bloch, I.3
Shai, Y.4
-
34
-
-
0034711958
-
Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions
-
Senes A., Gerstein M., and Engelman D.M. Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions. J. Mol. Biol. 296 (2000) 921-936
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 921-936
-
-
Senes, A.1
Gerstein, M.2
Engelman, D.M.3
-
35
-
-
5144227144
-
Motifs of two small residues can assist but are not sufficient to mediate transmembrane helix interactions
-
Schneider D., and Engelman D.M. Motifs of two small residues can assist but are not sufficient to mediate transmembrane helix interactions. J. Mol. Biol. 343 (2004) 799-804
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 799-804
-
-
Schneider, D.1
Engelman, D.M.2
-
36
-
-
41149173530
-
Three dimensional architecture of membrane-embedded MscS in the closed conformation
-
Vasquez V., Sotomayor M., Cortes D.M., Roux B., Schulten K., and Perozo E. Three dimensional architecture of membrane-embedded MscS in the closed conformation. J. Mol. Biol. 378 (2008) 55-70
-
(2008)
J. Mol. Biol.
, vol.378
, pp. 55-70
-
-
Vasquez, V.1
Sotomayor, M.2
Cortes, D.M.3
Roux, B.4
Schulten, K.5
Perozo, E.6
-
37
-
-
0030431744
-
Principles of membrane protein assembly and structure
-
von Heijne G. Principles of membrane protein assembly and structure. Prog. Biophys. Mol. Biol. 66 (1996) 113-139
-
(1996)
Prog. Biophys. Mol. Biol.
, vol.66
, pp. 113-139
-
-
von Heijne, G.1
-
39
-
-
48249095616
-
How translocons select transmembrane helices
-
White S.H., and von Heijne G. How translocons select transmembrane helices. Annu Rev Biophys 37 (2008) 23-42
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 23-42
-
-
White, S.H.1
von Heijne, G.2
-
40
-
-
0007949690
-
Interhelical hydrogen bonding drives strong interactions in membrane proteins
-
Zhou F.X., Cocco M.J., Russ W.P., Brunger A.T., and Engelman D.M. Interhelical hydrogen bonding drives strong interactions in membrane proteins. Nat. Struct. Biol. 7 (2000) 154-160
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 154-160
-
-
Zhou, F.X.1
Cocco, M.J.2
Russ, W.P.3
Brunger, A.T.4
Engelman, D.M.5
|