Simulation of self-assembly of cationic lipids and DNA into structured complexes

Journal of the American Chemical Society

Volumn 131, Issue 8, 2009, Pages 2875-2881

  Farago, Oded ^a   Grønbech Jensen, Niels ^b  

^a BEN GURION UNIVERSITY OF THE NEGEV   (Israel)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATIONIC LIPIDS; CHARGED RODS; COARSE GRAINED MODELS; COARSE-GRAINED MODELING; CYLINDRICAL MICELLES; DISORDERED STRUCTURES; DISORDERED SYSTEM; DNA MOLECULES; MEMBRANE MATERIAL; MEMBRANE RUPTURE; NEUTRAL LIPID; RIGIDITY PARAMETERS; SELF ASSEMBLED STRUCTURES; TIME-SCALE; TWO DIMENSIONAL SQUARE LATTICE; TYPE STRUCTURES;

DNA; DYES; GENES; LIPIDS; NUCLEIC ACIDS; SODIUM CHLORIDE;

SIMULATORS;

CATION; LIPID; SODIUM CHLORIDE; SOLVENT; DNA;

ARTICLE; COMPLEX FORMATION; DNA STRUCTURE; FEASIBILITY STUDY; LIPID MEMBRANE; MEMBRANE POTENTIAL; MEMBRANE RUPTURE; MICELLE; NONHUMAN; SIMULATION; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; HYDROPHOBICITY; RADIATION SCATTERING;

COMPUTER SIMULATION; DNA; HYDROPHOBICITY; LIPIDS; MODELS, CHEMICAL; MODELS, MOLECULAR; SCATTERING, RADIATION;

EID: 68049096292     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja807278p     Document Type: Article

References (38)

1. Felgner, P. L.; Rhodes, G. Nature 1991, 349, 351-352.
2. Smyth-Templeton, N., Lasic, D. D., Eds. Gene Therapy. Therapeutic Mechanisms and Strategies; Marcel Dekker Inc.: New York, 2000.
3. Smith, A. E. Annu. Rev. Microbiol. 1995, 49, 807-838.
4. Kay, M. A.; Glorioso, J. C.; Naldini, L. Nat. Med. 2001, 7, 33-40.
5. Felgner, P. L., Heller, M. J., Lehn, P., Behr, J.-P., Szoka, F. C., Eds. Artificial Self-Assembling Systems for Gene Delivery; American Chemical Society: Washington DC, 1996.
6. Miller, A. D. Angew. Chem., Int. Ed. 1998, 37, 1768-1785.
7. Huang, L., Hung, M. C., Wagner, E., Eds. Non-Viral Vectors for Gene Therapy; Academic Press: San Diego, 1999.
8. Mahato, R. I., Kim, S. W., Eds. Pharmaceutical Perspectives of Nucleic Acid-Based Therapeutics; Taylor and Francis: London, New York, 2002.
9. Kamiya, H.; Tsuchiya, H.; Yamazaki, J.; Harashima, H. Adv. Drug Delivery Rev. 2001, 52, 153-164.
10. Edelstein, M. L.; Abedi, M. R.; Wixon, J. J. Gene Med 2007, 9, 833-842.
11. Willard, H. F. Science 2000, 290, 1308-1309.
12. Ewert, K.; Slack, N. L.; Ahmad, A.; Evans, H. M.; Lin, A. J.; Samuel, C. E.; Safinya, C. R. Curr. Med. Chem. 2004, 11, 133-149.
13. Huebner, S.; Battersby, B. J.; Grimm, R.; Cevc, G. Biophys. J. 1999, 76, 3158-3166.
14. Kennedy, M. T.; Pozharski, E. V.; Rakhmanova, V. A.; MacDonald, R. C. Biophys. J. 2000, 78, 1620-1633.
15. Smisterova, J.; Wagenaar, A.; Stuart, M. C. A.; Polushkin, E.; ten Brinke, G.; Hulst, R.; Engbert, J. B. F. N.; Hoekstra, D. J. Biol. Chem. 2001, 276, 47615-47622.
16. Rädler, J. O.; Koltover, I.; Salditt, T.; Safinya, C. R. Science 1997, 275, 810-814.
17. Koltover, I.; Salditt, T.; Rädler, J. O.; Safinya, C. R. Science 1998, 281, 78-81.
18. Lin, A. J.; Slack, N. L.; Ahmad, A.; George, C. X.; Samuel, C. E.; Safinya, C. R. Biophys. J. 2003, 84, 3307-3316.
19. Ahmad, A.; Evans, H. M.; Ewert, K.; George, C. X.; Samuel, C. E.; Safinya, C. R. J. Gene Med. 2005, 7, 739-748.
20. Farago, O.; Ewert, K.; Ahmad, A.; Evans, H. M.; Grønbech-Jensen, N.; Safinya, C. R. Biophys. J. 2008, 95, 836-846.
21. Koynova, R.; Wang, L.; MacDonald, R. C. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 14373-14378.
22. Ewert, K.; Evans, H. M.; Zidovska, A.; Bouxsein, N. F.; Ahmad, A.; Safinya, C. R. J. Am. Chem. Soc 2006, 128, 3998-4006.
23. Rajesh, M.; Sen, J.; Srujan, M.; Mukherjee, K.; Sreedhar, B.; Chaudhuri, A. J. Am. Chem. Soc 2007, 129, 11408-11420.
24. Bandyopadhyay, S.; Tarek, M.; Klein, M. L. J. Phys. Chem. B 1999, 103, 10075-10080.
25. May, S.; Harries, D.; Ben-Shaul, A. Biophys. J. 2000, 78, 1681-1697.
26. Lasic, D. D.; Strey, H.; Stuart, M. C. A.; Podgornik, R.; Frederik, P. M. D. J. Am. Chem. Soc. 1997, 119, 832-833.
27. Safinya, C. R. Curr. Opin. Struct. Biol. 2001, 11, 440-448.
28. Brannigan, G.; Lin, L.C.-.L.; Brown, F. L. H. Eur. Biophys. J. 2006, 35, 104-124.
29. Farago, O.; Grønbech-Jensen, N.; Pincus, P. Phys. Rev. Lett. 2006, 96, 018102.
30. Farago, O.; Grønbech-Jensen, N. Biophys. J. 2007, 92, 3228-3240.
31. Noguchi, H.; Takasu, M. Phys. Rev. E 2001, 64, 041913.
32. Parisi, G. Statistical Field Theory; Addison-Wesley: New York, 1988.
33. Tapia-McClung, H.; Grønbech-Jensen, N. J. Polym. Sci. B: Polym. Phys. 2005, 43, 911-916.
34. Grønbech-Jensen, N. Int. J. Mod. Phys. C 1997, 8, 1287-1297.
35. Grønbech-Jensen, N. Comput. Phys. Commun. 1999, 119, 115-121.
36. Noguchi, H. Phys. Rev. E 2003, 67, 041901.
37. Nguyen, T. T.; Gopal, A.; Lee, K. Y. C.; Witten, T. A. Phys. Rev. E 2005, 72, 051930.
38. Khalid, S.; Bond, B. J.; Holyoake, J.; Hawtin, R. W.; Sanson, M. S. P. J. R. Soc. Interface 2008, 5, S241-S250.