Phylogenetic relationships among Boleosoma darter species (Percidae: Etheostoma)

Molecular Phylogenetics and Evolution

Volumn 53, Issue 1, 2009, Pages 249-257

  Heckman, K L ^a   Near, T J ^a   Alonzo, S H ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

Breeding color; Hybridization; Molecular phylogeny

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA; RIBOSOMAL SPACER DNA;

ANIMAL; ARTICLE; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; PERCH; PHYLOGENY;

ANIMALS; CELL NUCLEUS; CYTOCHROMES B; DNA, MITOCHONDRIAL; DNA, RIBOSOMAL SPACER; EVOLUTION, MOLECULAR; PERCHES; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

ANHINGIDAE; ETHEOSTOMA; ETHEOSTOMA LONGIMANUM; ETHEOSTOMA NIGRUM; ETHEOSTOMA OLMSTEDI; ETHEOSTOMA PERLONGUM; ETHEOSTOMA PODOSTEMONE; ETHEOSTOMA SUSANAE; ETHEOSTOMA VITREUM; PERCIDAE; PISCES;

EID: 67949112599     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.05.027     Document Type: Article

References (62)

1. Bailey R.M., and Etnier D.A. Comments on the subgenera of darters (Percidae) with descriptions of two new species of Etheostoma (Ulocentra) from southeastern United States. Misc. Publ. Mus. Zool. Univ. Michigan 175 (1988) 1-48
2. Bailey R.M., and Gosline W.A. Variation and systematic significance of vertebral counts in the American fishes of the family Percidae. Misc. Publ. Mus. Zool. Univ. Michigan 93 (1955) 1-44
3. Bossu C.M., and Near T.J. Gene trees reveal repeated instances of mitochondrial DNA introgression in Orangethroat Darters (Percidae: Etheostoma). Syst. Biol. 58 (2009) 114-129
4. Burr B.M., and Warren M.L. A distributional atlas of Kentucky fishes. Ky. Nature Preserves Comm. Sci. Tech. Series 4 (1986) 1-398
5. Chapleau F., and Pageau G. Morhpological differentiation of Etheostoma olmstedi and E. Nigrum (Pisces: Percidae) in Canada. Copeia 1985 (1985) 855-865
6. Chow S., and Hazama K. Universal PCR primers for S7 ribosomal protein gene introns in fish. Mol. Ecol. 7 (1998) 1255-1256
7. Clark J.E. Distribution of Etheostoma nigrum Rafinesque, Etheostoma olmstedi Storer, and their Introgressive Hybrid Populations in the James River Drainage (1978), Unpublished M.S. University of Richmond, Richmond
8. Clay, W.M., 1975. The fishes of Kentucky. Kentucky Department of Fish and Wildlife Resources.
9. Cole C.F. The Taxonomy of the Percid Fishes of the Genus Etheostoma, Subgenus Boleosoma, of Eastern United States (1957), Unpublished Ph.D. Cornell University, Ithaca
10. Cole C.F. Additional evidence for separation of Etheostoma olmstedi Storer from Etheostoma nigrum Rafinesque. Copeia 1965 (1965) 8-13
11. Cole C.F. A study of the Eastern Johnny Darter, Etheostoma olmstedi Storer (Teleostei, Percidae). Chesapeake Sci. 8 (1967) 28-51
12. Cole C.F. Status of the darters, Etheostoma nigrum, E. longimanum and E. podostemone in Atlantic drainages (Teleostei, Percidae, subgenus Boleosoma). In: Holt P.C., Paterson R.A., and Hubbard J.P. (Eds). The Distributional History of the Southern Appalachians. Part III, Vertebrates (1972), Virginia Polytechnic Institute and State University Resource Division Monograph, Blacksburg 119-138
13. Collette B.B. Systematic significance of breeding tubercles in fishes of the family Percidae. Proc. US Nat. Mus. 117 (1965) 567-614
14. Drummond A.J., and Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7 (2007) 214
15. Etnier D.A., and Starnes W.C. The Fishes of Tennessee (1993), University of Tennessee Press, Knoxville
16. Falls R.K. An Electrophoretic Comparison of Gene Loci in Etheostoma nigrum and Etheostoma olmstedi from the James River Drainage, Virginia (1982), Unpublished M.S. University of Richmond, Richmond
17. Holder M.T., Anderson J.A., and Holloway A.K. Difficulties in detecting hybridization. Syst. Biol. 50 (2001) 978-982
18. Hollingsworth Jr. P.R., and Near T.J. Temporal patterns of diversification and microendemism in Eastern Highland endemic barcheek darters (Percidae: Etheostomatinae). Evolution 63 (2009) 228-243
19. Hubbs C.L., and Raney E.C. Endemic fish fauna of Lake Waccamaw, North Carolina. Misc. Publ. Mus. Zool. Univ. Michigan (1946) (30 pp)
20. Hudson R.R., and Coyne J.A. Mathematical consequences of the genealogical species concept. Evolution 56 (2002) 1557-1565
21. Hudson R.R., and Turelli M. Stochasticity overrules the "three-times rule": genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA. Evolution 57 (2003) 182-190
22. Jenkins R.E., and Burkhead N.M. Freshwater Fishes of Virginia (1994), American Fisheries Society, Bethesda
23. Jenkins R.E., Lachner E.A., and Schwartz F.J. Fishes of the Central Appalachian drainages: their distribution and dispersal. In: Holt P.C., Paterson R.A., and Hubbard J.P. (Eds). The Distributional History of the Southern Appalachians. Part III, Vertebrates (1972), Virginia Polytechnic Institute and State University Resource Division Monograph, Blacksburg 43-117
24. Jordan D.S., and Swain J.S. List of the fishes collected in the Clear Fork of the Cumberland, Whitely County, Kentucky, with descriptions of three new species. Proc. US Nat. Mus. 6 (1883) 248-251
25. Keck B.P., and Near T.J. Assessing phylogenetic resolution among mitochondrial, nuclear, and morphological datasets in Nothonotus darters (Teleostei: Percidae). Mol. Phylogenet. Evol. 46 (2008) 708-720
26. Kuhne E.R. A Guide to the Fishes of Tennessee and the Mid-South (1939), Tennessee Department of Conservation, Nashville
27. Lang N.J., and Mayden R.L. Systematics of the subgenus Oligocephalus (Teleostei: Percidae: Etheostoma) with complete subgeneric sampling of the genus Etheostoma. Mol. Phylogenet. Evol. 43 (2007) 605-615
28. Lindquist D.G., Shute J.R., and Shute P.W. Spawning and nesting behavior of the Waccamaw Darter, Etheostoma perlongum. Envir. Biol. Fish. 6 (1981) 177-191
29. Maddison D.R., and Maddison W.P. MacClade 4: Analysis of Phylogeny and Character Evolution (2000), Sinauer, Sunderland
30. Maddison W.P. Gene trees in species trees. Syst. Biol. 46 (1997) 523-536
31. Mayden R.L., Wood R.M., Lang N.J., Dillman C.B., and Switzer J.F. Phylogenetic relationships of species of the darter genus Etheostoma (Perciformes: Percidae): evidence from parsimony and Bayesian analyses of mitochondrial cytochrome b sequences. In: Lozano-Vilano M.D.L., and Contreras-Balderas A.J. (Eds). Studies of North American Desert Fishes in Honor of E.P. (Phil) Pister, Conservationist (2006), Universidad Autonoma de Nuevo Leon, Monterrey, Mexico 20-39
32. McAllister D.E., Jolicoeur P., and Tsuyuki H. Morphological and myogen comparison of Johnny and Tessellated darters and their hybrids, genus Etheostoma, near Ottawa, Canada. J. Fish. Res. Board Can. 29 (1972) 1173-1180
33. Menhinick, E.F., 1991. The freshwater fishes of North Carolina. North Carolina Wildlife Research Commission, 227 pp.
34. Moore J., and Boardman R. List of type specimens in the fish collection at the Yale Peabody Museum, with a brief history of ichthyology at Yale University. Postilla 26 (1991) 1-36
35. Near T.J. Phylogenetic relationships of Percina (Percidae: Etheostomatinae). Copeia 2002 (2002) 1-14
36. Near T.J., and Keck B.P. Dispersal, vicariance, and timing of diversification in Nothonotus darters. Mol. Ecol. 14 (2005) 3485-3496
37. Near T.J., Porterfield J.C., and Page L.M. Evolution of cytochrome b and the molecular systematics of Ammocrypta (Percidae: Etheostomatinae). Copeia 2000 (2000) 701-711
38. Nei M. Molecular Evolutionary Genetics (1987), Columbia University Press, New York
39. Page L.M. Handbook of Darters (1983), T.F.H. Publications, Inc., Neptune City
40. Page L.M. Etheostomatinae. In: Craig J.F. (Ed). Percid Fishes: Systematics, Ecology and Exploitation (2000), Blackwell Science, Oxford 225-253
41. Page L.M., Hardman M., and Near T.J. Phylogenetic relationships of barcheek darters (Percidae: Etheostoma, Subgenus Catonotus) with descriptions of two new species. Copeia 2003 (2003) 512-530
42. Piller K.R., Bart H.L., and Hurley D.L. Phylogeography of the Greenside Darter complex, Etheostoma blennioides (Teleostomi: Percidae): a wide-ranging polytypic taxon. Mol. Phylogenet. Evol. 46 (2008) 974-985
43. Porter B.A., Cavender T.M., and Fuerst P.A. Molecular phylogeny of the snubnose darters, subgenus Ulocentra (genus Etheostoma, family Percidae). Mol. Phylogenet. Evol. 22 (2002) 364-374
44. Porterfield J.C., Page L.M., and Near T.J. Phylogenetic relationships among fantail darters (Percidae: Etheostoma: Catonotus): total evidence analysis of morphological and molecular data. Copeia 1999 (1999) 551-564
45. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
46. Ray J.M., Lang N.J., Wood R.M., and Mayden R.L. History repeated: recent and historical mitochondrial introgression between the Current Darter Etheostoma uniporum and Rainbow Darer Etheostoma caeruleum (Teleostei: Percidae). J. Fish. Biol. 72 (2008) 418-434
47. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
48. Shaw, K.A., Simons, A.M., Wiley, E.O., 1999. A reexamination of the phylogenetic relationships of the sand darters (Teleostei: Percidae). vol. 12, Scientific Papers, Natural History Museum, The University of Kansas, pp. 1-16.
49. Shute J.R. A Systematic Evaluation of the Waccamaw Darter, Etheostoma perlongum (Hubbs and Raney), with Comments on Relationships within the Subgenus Boleosoma (Percidae: Etheostomatini) (1984), Unpublished M.S. University of Tennessee, Knoxville
50. Shute P.W., Shute J.R., and Lindquist D.G. Age, growth and early life history of the Waccamaw darter, Etheostoma perlongum. Copeia 1982 (1982) 561-567
51. Simons A.M. Phylogenetic relationships of the Boleosoma species group (Percidae: Etheostoma). In: Mayden R.L. (Ed). Systematics, Historical Ecology, and North American Freshwater Fishes (1992), Stanford University Press, Stanford 268-292
52. Sloss B.L., Billington N., and Burr B.M. A molecular phylogeny of the Percidae (Teleostei, Perciformes) based on mitochondrial DNA sequence. Mol. Phylogenet. Evol. 32 (2004) 545-562
53. Song C.B., Near T.J., and Page L.M. Phylogenetic relations among percid fishes as inferred from mitochondrial cytochrome b DNA sequence data. Mol. Phylogenet. Evol. 10 (1998) 343-353
54. Starnes W.C., and Starnes L.B. Taxonomic status of the percid fish Etheostoma nigurm susanae. Copeia 1979 (1979) 426-430
55. Stephens M., and Donnelly P. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am. J. Hum. Genet. 73 (2003) 1162-1169
56. Stephens M., Smith N.J., and Donnelly P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68 (2001) 978-989
57. Stone F.L. Notes on two darters of the genus Boleosoma. Copeia 1947 (1947) 92-96
58. Strange R.M. Mitochondrial DNA variation in Johnny Darters (Pisces: Percidae) from eastern Kentucky supports stream capture for the origin of upper Cumberland River fishes. Am. Midl. Nat. 140 (1998) 96-102
59. Williams J.D., Neely D.A., Walsh S.J., and Burkhead N.M. Three new percid fishes (Percidae: Percina) from the Mobile Basin drainage of Alabama, Georgia, and Tennessee. Zootaxa 1 (2007) 28
60. Winn H.E. Comparative reproductive behavior and ecology of fourteen species of darters (Pisces-Percidae). Ecol. Monogr. 28 (1958) 155-191
61. Wood R.M., and Mayden R.L. Phylogenetic relationships among selected darter subgenera (Teleostei: Percidae) as inferred from analysis of allozymes. Copeia 1997 (1997) 265-274
62. Zorach T. Taxonomic status of the subspecies of the tessellated darter, Etheostoma olmstedi Storer, in southeastern Virginia. Chesapeake Sci. 12 (1971) 254-263