Characterization of salt bridges to lysines in the protein G B1 domain

Journal of the American Chemical Society

Volumn 131, Issue 13, 2009, Pages 4674-4684

  Tomlinson, Jennifer H ^a,b   Ullah, Saif ^a,b   Hansen, Poul Erik ^a,b   Williamson, Mike P ^a,b  

^a UNIVERSITY OF SHEFFIELD   (United Kingdom)

^b ROSKILDE UNIVERSITY   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

BUFFER COMPOSITION; CARBOXYLATE GROUPS; DENSITY FUNCTIONAL THEORY CALCULATIONS; DEUTERIUM ISOTOPE EFFECT; DIFFERENTIAL EFFECT; ELECTROSTATIC SHIELDING; GENERAL BASE CATALYSIS; HILL COEFFICIENT; LINE SHAPE; LOW CONCENTRATIONS; LYSINE RESIDUES; PH TITRATION; PROTEIN G; SALT BRIDGES; SIDE CHAINS;

AMINES; CARBOXYLATION; DENSITY FUNCTIONAL THEORY; DEUTERIUM; HYDRATES; ORGANIC COMPOUNDS; PROTONS; TITRATION;

AMINO ACIDS;

CARBOXYLIC ACID DERIVATIVE; LYSINE DERIVATIVE; PROTEIN G; ASPARTIC ACID; BACTERIAL PROTEIN; DEUTERIUM; G-SUBSTRATE; GLUTAMIC ACID; INORGANIC SALT; LYSINE; NERVE PROTEIN;

ARTICLE; CATALYSIS; CRYSTAL STRUCTURE; NUCLEAR MAGNETIC RESONANCE; PROTEIN DOMAIN; TITRIMETRY; CHEMISTRY; ESCHERICHIA COLI; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; PH; PROTEIN TERTIARY STRUCTURE; QUANTUM THEORY; STREPTOCOCCUS;

ASPARTIC ACID; BACTERIAL PROTEINS; DEUTERIUM; ESCHERICHIA COLI; GLUTAMIC ACID; HYDROGEN-ION CONCENTRATION; LYSINE; NERVE TISSUE PROTEINS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN STRUCTURE, TERTIARY; QUANTUM THEORY; SALTS; STREPTOCOCCUS;

EID: 67949103448     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja808223p     Document Type: Article

References (59)

1. Bosshard, H. R.; Marti, D. N.; Jelesarov, I. J. Mol. Recognit. 2004, 17, 1-16.
2. Horovitz, A.; Serrano, L.; Avron, B.; Bycroft, M.; Fersht, A. R. J. Mol. Biol. 1990, 216, 1031-1044.
3. Sarakatsannis, J. N.; Duan, Y. Proteins: Struct., Funct. Bioinf. 2005, 60, 732-739.
4. Barlow, D. J.; Thornton, J. M. J. Mol. Biol. 1983, 168, 867-885.
5. Dong, F; Zhou, H. X Biophys. J. 2002, 83, 1341-1347.
6. Tissot, A. C.; Vuilleumier, S.; Fersht, A. R. Biochemistry 1996, 35, 6786-6794.
7. Takano, K.; Tsuchimori, K.; Yamagata, Y.; Yutani, K. Biochemistry 2000, 39, 12375-12381.
8. Vijayakumar, M.; Zhou, H. X. J. Phys. Chem. B 2001, 105, 7334- 7340.
9. Sindelar, C. V.; Hendsch, Z. S.; Tidor, B. Protein Sci. 1998, 7, 1898- 1914.
10. Š ali, D; Bycroft, M; Fersht, A. R J. Mol. Biol. 1991, 220, 779-788.
11. Strop, P.; Mayo, S. L. Biochemistry 2000, 39, 1251-1255.
12. Merz, T.; Wetzel, S. K.; Firbank, S.; Plückthun, A.; Grütter, M. G.; Mittl, P. R. E. J. Mol. Biol. 2008, 376, 232-240.
13. Kobayashi, T.; Kageyama, Y.; Sumitomo, N.; Saeki, K.; Shirai, T.; Ito, S. World J. Microbiol. Biotechnol 2005, 21, 961-967.
14. Sun, D. P.; Sauer, U.; Nicholson, H.; Matthews, B. W. Biochemistry 1991, 30, 7142-7153.
15. Luisi, D. L.; Snow, C. D.; Lin, J. J.; Hendsch, Z. S.; Tidor, B.; Raleigh, D. P. Biochemistry 2003, 42, 7050-7060.
16. de Prat Gay, G.; Johnson, C. M.; Fersht, A. R. Protein Eng. 1994, 7, 103-108.
17. Anderson, D. E.; Becktel, W. J.; Dahlquist, F. W. Biochemistry 1990, 29, 2403-2408.
18. Marti, D. N.; Bosshard, H. R. J. Mol. Biol. 2003, 330, 621-637.
19. Sundd, M.; Iverson, N.; Ibarra-Molero, B.; Sanchez-Ruiz, J. M.; Robertson, A. D. Biochemistry 2002, 41, 7586-7596.
20. Sundd, M.; Robertson, A. D. J. Mol. Biol. 2003, 332, 927-936.
21. Lyčka, A.; Hansen, P. E. Magn. Reson. Chem. 1985, 23, 973-976.
22. Hansen, P. E.; Lyčka, A. Acta Chem. Scand. 1989, 43, 222-232.
23. Hansen, P. E.; Hansen, A. E.; Lyčka, A.; Buvari-Barcza, A. Acta Chem. Scand. 1993, 47, 777-788.
24. Sanders, J. K. M.; Hunter, B. K.; Jameson, C. J.; Romeo, G. Chem. Phys. Lett. 1988, 143, 471-476.
25. Munch, M.; Hansen, A. E.; Hansen, P. E.; Bouman, T. D. Acta Chem. Scand. 1992, 46, 1065-1071.
26. Hansen, P. E. Magn. Reson. Chem. 2000, 38, 1-10.
27. Gronenborn, A. M.; Filpula, D. R.; Essig, N. Z.; Achari, A.; Whitlow, M.; Wingfield, P. T.; Clore, G. M. Science 1991, 253, 657-661.
28. Gallagher, T.; Alexander, P.; Bryan, P.; Gilliland, G. L. Biochemistry 1994, 33, 4721-4729.
29. Iwahara, J.; Jung, Y. S.; Clore, G. M. J. Am. Chem. Soc. 2007, 129, 2971-2980.
30. Poon, D. K. Y.; Schubert, M.; Au, J.; Okon, M.; Withers, S. G.; McIntosh, L. P. J. Am. Chem. Soc. 2006, 128, 15388-15389.
31. Andre', I.; Linse, S.; Mulder, F. A. A. J. Am. Chem. Soc. 2007, 129, 15805-15813.
32. Tunnicliffe, R. B.; Waby, J. L.; Williams, R. J.; Williamson, M. P. Structure 2005, 13, 1677-1684.
33. Khare, D.; Alexander, P.; Antosiewicz, J.; Bryan, P.; Gilson, M.; Orban, J. Biochemistry 1997, 36, 3580-3589.
34. Joshi, M. D.; Sidhu, G.; Nielsen, J. E.; Brayer, G. D.; Withers, S. G.; McIntosh, L. P. Biochemistry 2001, 40, 10115-10139.
35. Jameson, C. J. In Isotopes in the physical and biomedical sciences; Buncel, E., Jones, J. R., Eds.; Elsevier Science: Amsterdam, 1991; Vol. 2, p 1.
36. Frericks Schmidt, H. L.; Sperling, L. J.; Gao, Y. G.; Wylie, B. J.; Boettcher, J. M.; Wilson, S. R.; Rienstra, C. A. J. Phys. Chem. B 2007, 111, 14362-14369.
37. Nauli, S.; Kuhlman, B.; Le Trong, I.; Stenkamp, R. E.; Teller, D.; Baker, D. Protein Sci. 2002, 11, 2924-2931.
38. Wunderlich, M.; Max, K. E. A.; Roske, Y.; Mueller, U.; Heinemann, U.; Schmid, F. X. J. Mol. Biol. 2007, 373, 775-784.
39. Tugarinov, V.; Hwang, P. M.; Ollerenshaw, J. E.; Kay, L. E. J. Am. Chem. Soc. 2003, 125, 10420-10428.
40. Forsyth, W. R.; Antosiewiez, J. M.; Robertson, A. D. Proteins: Struct., Funct. Genet. 2002, 48, 388-403.
41. Lindman, S.; Linse, S.; Mulder, F. A. A,; Andre', I. Biophys. J. 2007, 92, 257-266.
42. Gao, G. H.; Prasad, R.; Lodwig, S. N.; Unkefer, C. J.; Beard, W. A.; Wilson, S. H.; London, R. E. J. Am. Chem. Soc. 2006, 128, 8104- 8105.
43. Williamson, M. P.; Asakura, T. J. Magn. Reson. Ser. B 1993, 101, 63-71.
44. Xu, X. P.; Case, D. A. Biopolymers 2002, 65, 408-423.
45. Asakura, T.; Taoka, K.; Demura, M.; Williamson, M. P. J. Biomol. NMR 1995, 6, 227-236.
46. Bundi, A.; Wüthrich, K. Biopolymers 1979, 18, 299-311.
47. Ebina, S.; Wüthrich, K. J. Mol. Biol. 1984, 179, 283-288.
48. Szyperski, T.; Antuch, W.; Schick, M.; Betz, A.; Stone, S. R.; Wüthrich, K. Biochemistry 1994, 33, 9303-9310.
49. Betz, M.; Löhr, F.; Wienk, H.; Rüterjans, H. Biochemistry 2004, 43, 5820-5831.
50. Laurents, D. V.; Huyghues-Despointes, B. M. P.; Bruix, M.; Thurlkill, R. L.; Schell, D.; Newsom, S.; Grimsley, G. R.; Shaw, K. L.; Treviño, S.; Rico, M.; Briggs, J. M.; Antosiewicz, J. M.; Scholtz, J. M.; Pace, C. N. J. Mol. Biol. 2003, 325, 1077-1092.
51. Li, H.; Robertson, A. D.; Jensen, J. H. Proteins: Struct., Funct. Bioinf. 2004, 55, 689-704.
52. Thurlkill, R. L.; Grimsley, G. R.; Scholtz, M.; Pace, C. N. J. Mol. Biol. 2006, 362, 594-604.
53. Marqusee, S.; Baldwin, R. L. Proc. Natl Acad. Sci. U.S.A. 1987, 84, 8898-8902.
54. Tilton, R. F.; Dewan, J. C.; Petsko, G. A. Biochemistry 1992, 31, 2469- 2481.
55. Gruia, A. D.; Fischer, S.; Smith, J. C. Proteins: Struct., Funct. Genet. 2003, 50, 507-515.
56. Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. Nucleic Acids Res. 2000, 28, 235-242.
57. Segawa, T.; Kateb, F.; Duma, L.; Bodenhausen, G.; Pelupessy, P. ChemBioChem 2008, 9, 537-542.
58. Liepinsh, E.; Otting, G. Magn. Reson. Med. 1996, 35, 30-42.
59. Atkins, P. W. Physical Chemistry, 5th ed.; Oxford University Press: Oxford, UK, 1994.