Psychrobacter fulvigenes sp. nov., isolated from a marine crustacean from the Sea of Japan

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 6, 2009, Pages 1480-1486

  Romanenko, Lyudmila A ^a   Tanaka, Naota ^b   Frolova, Galina M ^a   Mikhailov, Valery V ^a  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; BACTERIAL DNA; DNA TOPOISOMERASE (ATP HYDROLYSING); RIBOSOME DNA; SEA WATER;

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BIOCHEMISTRY; CLUSTER ANALYSIS; CONTROLLED STUDY; CRUSTACEA; DNA DNA HYBRIDIZATION; GENE SEQUENCE; JAPAN; MOLECULAR PHYLOGENY; MORAXELLACEAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; PIGMENTATION; PRIORITY JOURNAL; PROTEIN SYNTHESIS; PSYCHROBACTER; PSYCHROBACTER AQUIMARIS; PSYCHROBACTER CIBARIUS; PSYCHROBACTER FAECALIS; PSYCHROBACTER FULVIGENES; PSYCHROBACTER NEMHAENSIS; PSYCHROBACTER NIVIMARIS; PSYCHROBACTER PULMONIS; PSYCHROBACTER URATIVORANS; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES COMPARISON; ANIMAL; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; POLYMERASE CHAIN REACTION; SEA; SPECIES DIFFERENCE;

CRUSTACEA; PSYCHROBACTER; PSYCHROBACTER AQUIMARIS; PSYCHROBACTER CIBARIUS; PSYCHROBACTER FAECALIS; PSYCHROBACTER NAMHAENSIS; PSYCHROBACTER NIVIMARIS; PSYCHROBACTER PULMONIS; PSYCHROBACTER URATIVORANS;

ANIMALS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CRUSTACEA; DNA GYRASE; DNA, BACTERIAL; DNA, RIBOSOMAL; JAPAN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OCEANS AND SEAS; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; PSYCHROBACTER; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 67651099071     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.007195-0     Document Type: Article

References (30)

1. Bakermans, C., Ayala-del-Río, H. L., Ponder, M. A., Vishnivetskaya, T., Gilichinsky, D., Thomashow, M. F. & Tiedje, J. M. (2006). Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost. Int J Syst Evol Microbiol 56, 1285-1291.
2. Bowman, J. P., Cavanagh, J., Austin, J. J. & Sanderson, K. (1996). Novel Psychrobacter species from Antarctic ornithogenic soils. Int J Syst Bacteriol 46, 841-848.
3. Bowman, J. P., Nichols, D. S. & McMeekin, T. A. (1997). Psychrobacter glacincola sp. nov., a halotolerant, psychrophilic bacterium isolated from Antarctic sea ice. Syst Appl Microbiol 20, 209-215.
4. Bozal, N., Montes, M. J., Tudela, E. & Guinea, J. (2003). Characterization of several Psychrobacter strains isolated from Antarctic environments and description of Psychrobacter luti sp. nov. and Psychrobacter fozii sp. nov. Int J Syst Evol Microbiol 53, 1093-1100.
5. Denner, E. B. M., Mark, B., Busse, H. J., Turkiewicz, M. & Lubitz, W. (2001). Psychrobacter proteolyticus sp. nov., a psychrotrophic, halotolerant bacterium isolated from the Antarctic krill Euphausia superba Dana, excreting a cold-adapted metalloprotease. Syst Appl Microbiol 24, 44-53.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Heuchert, A., Glöckner, F. O., Amann, R. & Fischer, U. (2004). Psychrobacter nivimaris sp. nov., a heterotrophic bacterium attached to organic particles isolated from the south Atlantic (Antarctica). Syst Appl Microbiol 27, 399-406.
8. Jung, S. Y., Lee, M. H., Oh, T. K., Park, Y. H. & Yoon, J. H. (2005). Psychrobacter cibarius sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 55, 577-582.
9. Juni, E. & Heym, G. A. (1986). Psychrobacter immobilis gen. nov., sp. nov.: genospecies composed of gram-negative, aerobic, oxidase-positive coccobacilli. Int J Syst Bacteriol 36, 388-391.
10. Kämpfer, P., Albrecht, A., Buczolits, S. & Busse, H. J. (2002). Psychrobacter faecalis sp. nov., a new species from a bioaerosol originating from pigeon faeces. Syst Appl Microbiol 25, 31-36.
11. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
12. Maruyama, A., Honda, D., Yamamoto, H., Kitamura, K. & Higashihara, T. (2000). Phylogenetic analysis of psychrophilic bacteria isolated from the Japan Trench, including a description of the deep-sea species Psychrobacter pacificensis sp. nov. Int J Syst Evol Microbiol 50, 835-846.
13. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
14. Romanenko, L. A., Schumann, P., Rohde, M., Lysenko, A. M., Mikhailov, V. V. & Stackebrandt, E. (2002). Psychrobacter submarinus sp. nov. and Psychrobacter marincola sp. nov., psychrophilic halophiles from marine environments. Int J Syst Evol Microbiol 52, 1291-1297.
15. Romanenko, L. A., Lysenko, A. M., Rohde, M., Mikhailov, V. V. & Stackebrandt, E. (2004). Psychrobacter maritimus sp. nov., and Psychrobacter arenosus sp. nov., isolated from coastal sea-ice and sediments of the Sea of Japan. Int J Syst Evol Microbiol 54, 1741-1745.
16. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K. (1997). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47, 289-298.
17. Shivaji, S., Reddy, G. S. N., Raghavan, P. U. M., Sarita, N. B. & Delille, D. (2004). Psychrobacter salsus sp. nov. and Psychrobacter adeliensis sp. nov. isolated from fast ice from Adelie Land, Antarctica. Syst Appl Microbiol 27, 628-635.
18. Shivaji, S., Reddy, G. S. N., Suresh, K., Gupta, P., Chintalapati, S., Schumann, P., Stackebrandt, E. & Matsumoto, G. I. (2005). Two novel Psychrobacter species from Antarctica: description of Psychrobacter vallis sp. nov. and Psychrobacter aquaticus sp. nov. Int J Syst Evol Microbiol 55, 757-762.
19. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-655. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
20. Stackebrandt, E. & Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152-155.
21. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
22. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA 4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
23. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
24. Vela, A. I., Collins, M. D., Later, M. V., Mateos, A., Moreno, M. A., Hutson, R., Domínguez, L. & Fernández-Garayzábal, J. F. (2003). Psychrobacter pulmonis sp. nov., isolated from the lungs of lambs. Int J Syst Evol Microbiol 53, 415-419.
25. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
26. Yoon, J. H., Kang, K. H. & Park, Y. H. (2003). Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 53, 449-454.
27. Yoon, J. H., Lee, C. H., Kang, S. J. & Oh, T. K. (2005a). Psychrobacter celer sp. nov., isolated from sea water of the South Sea in Korea. Int J Syst Evol Microbiol 55, 1885-1890.
28. Yoon, J. H., Lee, C. H., Yeo, S. H. & Oh, T. K. (2005b). Psychrobacter aquimaris sp. nov. and Psychrobacter namhaensis sp. nov., isolated from sea water of the South Sea in Korea. Int J Syst Evol Microbiol 55, 1007-1013.
29. Yoon, J. H., Yeo, S. H., Oh, T. K. & Park, Y. H. (2005c). Psychrobacter alimentarius sp. nov., isolated from squid jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 55, 171-176.
30. Yumoto, I., Hirota, K., Sogabe, Y., Nodasaka, Y., Yokota, Y. & Hoshino, T. (2003). Psychrobacter okhotskensis sp. nov., a lipase-producing facultative psychrophile isolated from the coast of the Okhotsk Sea. Int J Syst Evol Microbiol 53, 1985-1989.