-
1
-
-
0029036829
-
The hitchhiking effect on the site frequency spectrum on DNA polymorphisms
-
BRAVERMAN, J., R. HUDSON, N. KAPLAN, C. LANGLEY and W. STEPHAN, 1995 The hitchhiking effect on the site frequency spectrum on DNA polymorphisms. Genetics 140: 783-796.
-
(1995)
Genetics
, vol.140
, pp. 783-796
-
-
Braverman, J.1
Hudson, R.2
Kaplan, N.3
Langley, C.4
Stephan, W.5
-
2
-
-
3042700117
-
Evidence for substantial fine-scale variation in recombination rates across the human genome
-
CRAWFORD, D., T. BHANGALE, N. LI, G. HELLENTHAL, M. RIEDER et al., 2004 Evidence for substantial fine-scale variation in recombination rates across the human genome. Nat. Genet. 36: 700-706.
-
(2004)
Nat. Genet.
, vol.36
, pp. 700-706
-
-
Crawford, D.1
Bhangale, T.2
Li, N.3
Hellenthal, G.4
Rieder, M.5
-
3
-
-
0003516147
-
-
Cambridge University Press, Cambridge, UK
-
DURBIN, R., S. EDDY, A. KROGH and G. MITCHISON, 1998 Biological Sequence Analysis. Cambridge University Press, Cambridge, UK.
-
(1998)
Biological Sequence Analysis
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchison, G.4
-
4
-
-
0033911640
-
Hitchhiking under positive Darwinian selection
-
FAY, J., and C.-I. WU, 2000 Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.
-
(2000)
Genetics
, vol.155
, pp. 1405-1413
-
-
Fay, J.1
Wu, C.-I.2
-
5
-
-
18444369013
-
The structure of haplotype blocks in the human genome
-
DOI 10.1126/science.1069424
-
GABRIEL, S., S. SCHAFFNER, H. NGUYEN, J. MOORE, J. ROY et al., 2002 The structure of haplotype blocks in the human genome. Science 296: 2225-2229. (Pubitemid 34680308)
-
(2002)
Science
, vol.296
, Issue.5576
, pp. 2225-2229
-
-
Gabriel, S.B.1
Schaffner, S.F.2
Nguyen, H.3
Moore, J.M.4
Roy, J.5
Blumenstiel, B.6
Higgins, J.7
Defelice, M.8
Lochner, A.9
Faggart, M.10
Liu-Cordero, S.N.11
Rotimi, C.12
Adeyemo, A.13
Cooper, R.14
Ward, R.15
Lander, E.S.16
Daly, M.J.17
Altshuler, D.18
-
6
-
-
22344444998
-
Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophilia melanogaster populations
-
HADDRILL, P., K. THORNTON, B. CHARLESWORTH and P. ANDOLFATTO, 2005 Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophilia melanogaster populations. Genome Res. 15: 790-799.
-
(2005)
Genome Res.
, vol.15
, pp. 790-799
-
-
Haddrill, P.1
Thornton, K.2
Charlesworth, B.3
Andolfatto, P.4
-
7
-
-
33847253862
-
Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model
-
HOBOLTH, A., O. CHRISTENSEN, T. MAILUND and M. SCHIERUP, 2006 Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model. PLoS Genet. 3(2): e7.
-
(2006)
PLoS Genet.
, vol.3
, Issue.2
-
-
Hobolth, A.1
Christensen, O.2
Mailund, T.3
Schierup, M.4
-
8
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
HUDSON, R., 2002 Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.1
-
9
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
HUDSON, R., M. KREITMAN and M. AGUADÉ , 1987 A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.1
Kreitman, M.2
Aguadé, M.3
-
10
-
-
0034791569
-
Detection of recombination in DNA multiple alignments with hidden Markov models
-
HUSMEIER, D., and F. WRIGHT, 2001 Detection of recombination in DNA multiple alignments with hidden Markov models. J. Comp. Biol. 8: 401-427.
-
(2001)
J. Comp. Biol.
, vol.8
, pp. 401-427
-
-
Husmeier, D.1
Wright, F.2
-
11
-
-
0034795550
-
Intensely punctate meiotic recombination in the class ii region of the major histocompatibility complex
-
JEFFREYS, A., L. KAUPPI and R. NEUMANN, 2001 Intensely punctate meiotic recombination in the class ii region of the major histocompatibility complex. Nat. Genet. 29: 217-222.
-
(2001)
Nat. Genet.
, vol.29
, pp. 217-222
-
-
Jeffreys, A.1
Kauppi, L.2
Neumann, R.3
-
12
-
-
23344438911
-
Distinguishing between selective sweeps and demography using DNA polymorphism data
-
JENSEN, J., Y. KIM, V. BAUER DUMONT, C. AQUADRO and C. BUSTAMANTE, 2005 Distinguishing between selective sweeps and demography using DNA polymorphism data. Genetics 170: 1401-1410.
-
(2005)
Genetics
, vol.170
, pp. 1401-1410
-
-
Jensen, J.1
Kim, Y.2
Bauer Dumont, V.3
Aquadro, C.4
Bustamante, C.5
-
13
-
-
34548395446
-
On the utility of linkage disequilibrium as a statistic for identifying targets of positive selection in nonequilibrium populations
-
JENSEN, J., K. THORNTON, C. BUSTAMANTE and C. AQUADRO, 2007 On the utility of linkage disequilibrium as a statistic for identifying targets of positive selection in nonequilibrium populations. Genetics 176: 2371-2379.
-
(2007)
Genetics
, vol.176
, pp. 2371-2379
-
-
Jensen, J.1
Thornton, K.2
Bustamante, C.3
Aquadro, C.4
-
14
-
-
0024372736
-
The hitchhiking effect revisited
-
KAPLAN, N., R. HUDSON and C. LANGLEY, 1989 The hitchhiking effect revisited. Genetics 123: 887-899.
-
(1989)
Genetics
, vol.123
, pp. 887-899
-
-
Kaplan, N.1
Hudson, R.2
Langley, C.3
-
15
-
-
3843073210
-
Linkage disequilibrium as a signature of selective sweeps
-
KIM, Y., and R. NIELSEN, 2004 Linkage disequilibrium as a signature of selective sweeps. Genetics 167: 1513-1524.
-
(2004)
Genetics
, vol.167
, pp. 1513-1524
-
-
Kim, Y.1
Nielsen, R.2
-
16
-
-
0036189827
-
Detecting a local signature of genetic hitchhiking along a recombining chromosome
-
KIM, Y., and W. STEPHAN, 2002 Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics 160: 765-777.
-
(2002)
Genetics
, vol.160
, pp. 765-777
-
-
Kim, Y.1
Stephan, W.2
-
17
-
-
26444508054
-
Maximum-likelihood methods for detecting recent positive selection and localizing the selected site in the genome
-
LI, H., and W. STEPHAN, 2005 Maximum-likelihood methods for detecting recent positive selection and localizing the selected site in the genome. Genetics 171: 377-384.
-
(2005)
Genetics
, vol.171
, pp. 377-384
-
-
Li, H.1
Stephan, W.2
-
18
-
-
33750491918
-
Inferring the demographic history and rate of adaptative substitution in Drosophila
-
LI, H., and W. STEPHAN, 2006 Inferring the demographic history and rate of adaptative substitution in Drosophila. PLoS Genet. 2(10): e166.
-
(2006)
PLoS Genet.
, vol.2
, Issue.10
-
-
Li, H.1
Stephan, W.2
-
19
-
-
0347361674
-
Modeling linkage disequilibrium, and identifying recombination hotspots using SNP data
-
LI, N., and M. STEPHENS, 2003 Modeling linkage disequilibrium, and identifying recombination hotspots using SNP data. Genetics 165: 2213-2233.
-
(2003)
Genetics
, vol.165
, pp. 2213-2233
-
-
Li, N.1
Stephens, M.2
-
20
-
-
0016220238
-
The hitch-hiking effect of a favourable gene
-
MAYNARD SMITH, J., and J. HAIGH, 1974 The hitch-hiking effect of a favourable gene. Genet. Res. 23: 23-35.
-
(1974)
Genet. Res.
, vol.23
, pp. 23-35
-
-
Maynard Smith, J.1
Haigh, J.2
-
21
-
-
34249005874
-
The structure of linkage disequilibrium around a selective sweep
-
MCVEAN, G., 2006 The structure of linkage disequilibrium around a selective sweep. Genetics 175: 1395-1406.
-
(2006)
Genetics
, vol.175
, pp. 1395-1406
-
-
Mcvean, G.1
-
22
-
-
27544437635
-
Genomic scans for selective sweeps using SNP data
-
NIELSEN, R., L. WILLIAMSON, Y. KIM, M. HUBISZ, A. CLARK et al., 2005 Genomic scans for selective sweeps using SNP data. Genome Res. 15: 1566-1575.
-
(2005)
Genome Res.
, vol.15
, pp. 1566-1575
-
-
Nielsen, R.1
Williamson, L.2
Kim, Y.3
Hubisz, M.4
Clark, A.5
-
23
-
-
33845971545
-
Soft sweeps iii: The signature of positive selection from recurrent mutation
-
PENNINGS, P., and J. HERMISSON, 2006 Soft sweeps iii: the signature of positive selection from recurrent mutation. PLoS Genet. 2(12): e186.
-
(2006)
PLoS Genet.
, vol.2
, Issue.12
-
-
Pennings, P.1
Hermisson, J.2
-
24
-
-
52049100862
-
Linkage disequilibrium under genetic hitchhiking in finite populations
-
PFAFFELHUBER, P., A. LEHNERT and W. STEPHAN, 2008 Linkage disequilibrium under genetic hitchhiking in finite populations. Genetics 179: 527-537.
-
(2008)
Genetics
, vol.179
, pp. 527-537
-
-
Pfaffelhuber, P.1
Lehnert, A.2
Stephan, W.3
-
25
-
-
28644440530
-
The signature of positive selection on standing genetic variation
-
PRZEWORSKI, M., G. COOP and J. WALL, 2005 The signature of positive selection on standing genetic variation. Evolution 59(11): 2321-2323.
-
(2005)
Evolution
, vol.59
, Issue.11
, pp. 2321-2323
-
-
Przeworski, M.1
Coop, G.2
Wall, J.3
-
26
-
-
0036189674
-
A microsatellite-based multilocus screen for the identification of local selective sweeps
-
SCHLÖTTERER, C., 2002 A microsatellite-based multilocus screen for the identification of local selective sweeps. Genetics 160: 753-763.
-
(2002)
Genetics
, vol.160
, pp. 753-763
-
-
Schlötterer, C.1
-
27
-
-
1542537849
-
Combining phylogenetic and hidden Markov models in biosequence analysis
-
SIEPEL, A., and D. HAUSSLER, 2004 Combining phylogenetic and hidden Markov models in biosequence analysis. J. Comp. Biol. 11: 413-428.
-
(2004)
J. Comp. Biol.
, vol.11
, pp. 413-428
-
-
Siepel, A.1
Haussler, D.2
-
28
-
-
4644333804
-
Selsim: A program to simulate population genetic data with natural selection and recombination
-
SPENCER, C., and G. COOP, 2004 Selsim: a program to simulate population genetic data with natural selection and recombination. Bioinformatics 20(18): 3673-3675.
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3673-3675
-
-
Spencer, C.1
Coop, G.2
-
29
-
-
33646180401
-
Hitchhiking effect on linkage disequilibrium between linked neutral loci
-
STEPHAN, W., Y. SONG and C. LANGLEY, 2006 Hitchhiking effect on linkage disequilibrium between linked neutral loci. Genetics 172: 2647-2663.
-
(2006)
Genetics
, vol.172
, pp. 2647-2663
-
-
Stephan, W.1
Song, Y.2
Langley, C.3
-
30
-
-
33744815615
-
How reliable are empirical genomic scans for selective sweeps
-
TESHIMA, K., G. COOP and M. PRZEWORSKI, 2006 How reliable are empirical genomic scans for selective sweeps. Genome Res. 16: 702-712.
-
(2006)
Genome Res.
, vol.16
, pp. 702-712
-
-
Teshima, K.1
Coop, G.2
Przeworski, M.3
-
31
-
-
33644763127
-
Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster
-
THORNTON, K., and P. ANDOLFATTO, 2006 Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics 172: 1607-1619.
-
(2006)
Genetics
, vol.172
, pp. 1607-1619
-
-
Thornton, K.1
Andolfatto, P.2
-
32
-
-
34247891656
-
Controlling the false-positive rate in multilocus genome scans for selection
-
THORNTON, K., and J. JENSEN, 2007 Controlling the false-positive rate in multilocus genome scans for selection. Genetics 175: 737-750.
-
(2007)
Genetics
, vol.175
, pp. 737-750
-
-
Thornton, K.1
Jensen, J.2
-
33
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
WATTERSON, G., 1975 On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 256-276.
-
(1975)
Theor. Popul. Biol.
, vol.7
, pp. 256-276
-
-
Watterson, G.1
-
34
-
-
33846543002
-
Identification of selective sweeps using a dynamically adjusted number of linked microsatellites
-
WIEHE, T., V. NOLTE, D. ZIVKOVIC and C. SCHLÖTTERER, 2007 Identification of selective sweeps using a dynamically adjusted number of linked microsatellites. Genetics 175: 207-218.
-
(2007)
Genetics
, vol.175
, pp. 207-218
-
-
Wiehe, T.1
Nolte, V.2
Zivkovic, D.3
Schlötterer, C.4
-
35
-
-
34347336584
-
Localizing recent adaptive evolution in the human genome
-
WILLIAMSON, S., M. HUBISZ, A. CLARK, B. PAYSEUR, C. BUSTAMANTE et al., 2007 Localizing recent adaptive evolution in the human genome. PLoS Genet. 3(6): e90.
-
(2007)
PLoS Genet.
, vol.3
, Issue.6
-
-
Williamson, S.1
Hubisz, M.2
Clark, A.3
Payseur, B.4
Bustamante, C.5
-
36
-
-
0033150745
-
Recombination as a point process along sequences
-
WIUF, C., and J. HEIN, 1999 Recombination as a point process along sequences. Theor. Popul. Biol. 55: 248-259.
-
(1999)
Theor. Popul. Biol.
, vol.55
, pp. 248-259
-
-
Wiuf, C.1
Hein, J.2
|