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Volumn 15, Issue 6, 2009, Pages 918-925

Genetic variants in surfactant, pulmonary-associated protein D (SFTPD) and Japanese susceptibility to ulcerative colitis

Author keywords

Inflammatory bowel disease (IBD); Single nucleotide polymorphisms (SNPs); Surfactant protein D (SP D, SFTPD); Susceptibility; Ulcerative colitis (UC)

Indexed keywords

SURFACTANT PROTEIN D; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR NKX2-3; UNCLASSIFIED DRUG;

EID: 67650240393     PISSN: 10780998     EISSN: 15364844     Source Type: Journal    
DOI: 10.1002/ibd.20936     Document Type: Article
Times cited : (21)

References (42)
  • 1
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • Frazer KA, Ballinger DG, Cox DR, et al. A second generation human haplotype map of over 3.1 million SNPs. Nature. 2007;449:851-861.
    • (2007) Nature , vol.449 , pp. 851-861
    • Frazer, K.A.1    Ballinger, D.G.2    Cox, D.R.3
  • 2
    • 33846627302 scopus 로고    scopus 로고
    • A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1
    • Hampe J, Franke A, Rosenstiel P, et al. A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1. Nat Genet. 2007;39:207-211.
    • (2007) Nat Genet , vol.39 , pp. 207-211
    • Hampe, J.1    Franke, A.2    Rosenstiel, P.3
  • 3
    • 34347338690 scopus 로고    scopus 로고
    • Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn disease susceptibility
    • Parkes M, Barrett JC, Prescott NJ, et al. Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn disease susceptibility. Nat Genet. 2007;39:830-832.
    • (2007) Nat Genet , vol.39 , pp. 830-832
    • Parkes, M.1    Barrett, J.C.2    Prescott, N.J.3
  • 4
    • 34247554965 scopus 로고    scopus 로고
    • Genome-wide association study identifies new susceptibility loci for Crohn disease and implicated autophagy in disease pathogenesis
    • Rioux JD, Xavier RJ, Taylor KD, et al. Genome-wide association study identifies new susceptibility loci for Crohn disease and implicated autophagy in disease pathogenesis. Nat Genet. 2007;39:596-604.
    • (2007) Nat Genet , vol.39 , pp. 596-604
    • Rioux, J.D.1    Xavier, R.J.2    Taylor, K.D.3
  • 5
    • 0035978651 scopus 로고    scopus 로고
    • Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn disease
    • Hugot JP, Chamaillard M, Zouali H, et al. Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn disease. Nature. 2001;411:599-603.
    • (2001) Nature , vol.411 , pp. 599-603
    • Hugot, J.P.1    Chamaillard, M.2    Zouali, H.3
  • 6
    • 0035978533 scopus 로고    scopus 로고
    • A frameshift mutation in NOD2 associated with susceptibility to Crohn disease
    • Ogura Y. Bonen DK, Inohara N, et al. A frameshift mutation in NOD2 associated with susceptibility to Crohn disease. Nature. 2001; 411:603-606.
    • (2001) Nature , vol.411 , pp. 603-606
    • Ogura, Y.1    Bonen, D.K.2    Inohara, N.3
  • 7
    • 27944464550 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms in TNFSF15 confer susceptibility to Crohn disease
    • Yamazaki K, McGovern D, Ragoussis J, et al. Single nucleotide polymorphisms in TNFSF15 confer susceptibility to Crohn disease. Hum Mol Genet. 2005;14:3499-3506.
    • (2005) Hum Mol Genet , vol.14 , pp. 3499-3506
    • Yamazaki, K.1    McGovern, D.2    Ragoussis, J.3
  • 8
    • 33845340501 scopus 로고    scopus 로고
    • A genome-wide association study identifies IL23R as an inflammatory bowel disease gene
    • Duerr RH, Taylor KD, Brant SR, et al. A genome-wide association study identifies IL23R as an inflammatory bowel disease gene. Science. 2006;314:1461-1463.
    • (2006) Science , vol.314 , pp. 1461-1463
    • Duerr, R.H.1    Taylor, K.D.2    Brant, S.R.3
  • 9
    • 2442519456 scopus 로고    scopus 로고
    • Genetic variation in DLG5 is associated with inflammatory bowel disease
    • Stoll M, Corneliussen B, Costello CM, et al. Genetic variation in DLG5 is associated with inflammatory bowel disease. Nat Genet. 2004;36:476-480.
    • (2004) Nat Genet , vol.36 , pp. 476-480
    • Stoll, M.1    Corneliussen, B.2    Costello, C.M.3
  • 10
    • 0031795467 scopus 로고    scopus 로고
    • Genetics of the hydrophilic surfactant protein A and D
    • Floros J, Hoover RR. Genetics of the hydrophilic surfactant protein A and D. Biochem Biophys Acta. 1998;1408:312-322.
    • (1998) Biochem Biophys Acta , vol.1408 , pp. 312-322
    • Floros, J.1    Hoover, R.R.2
  • 11
    • 11244287371 scopus 로고    scopus 로고
    • Immunoregulatory functions of surfactant proteins
    • Wright JR. Immunoregulatory functions of surfactant proteins. Nat Rev Immunol. 2005;5:58-68.
    • (2005) Nat Rev Immunol , vol.5 , pp. 58-68
    • Wright, J.R.1
  • 12
    • 0041423663 scopus 로고    scopus 로고
    • Apoptosis: Giving phosphatidylserine recognition an assist - with a twist
    • Fadok VA, Henson PM. Apoptosis: giving phosphatidylserine recognition an assist - with a twist. Curr Biol. 2003;13:R656-R657.
    • (2003) Curr Biol , vol.13
    • Fadok, V.A.1    Henson, P.M.2
  • 13
    • 85047690807 scopus 로고    scopus 로고
    • Surfactant proteins A and D inhibit the growth of Gram-negative bacteria by increasing membrane permeability
    • Wu H, Kuzmenko A, Wan S, et al. Surfactant proteins A and D inhibit the growth of Gram-negative bacteria by increasing membrane permeability. J Clin Invest. 2003;111:1589-1602.
    • (2003) J Clin Invest , vol.111 , pp. 1589-1602
    • Wu, H.1    Kuzmenko, A.2    Wan, S.3
  • 14
    • 3242755677 scopus 로고    scopus 로고
    • Bordetella pertussis lipopolysaccharide resists the bactericidal effects of pulmonary surfactant protein A
    • Schaeffer LM, McComack FX, Wu H, et al. Bordetella pertussis lipopolysaccharide resists the bactericidal effects of pulmonary surfactant protein A. J Immunol. 2004;173:1959-1965.
    • (2004) J Immunol , vol.173 , pp. 1959-1965
    • Schaeffer, L.M.1    McComack, F.X.2    Wu, H.3
  • 15
    • 0034080543 scopus 로고    scopus 로고
    • Localization of lung surfactant protein D on mucosal surface in human tissues
    • Madsen J, Kliem A, Tornøe, et al. Localization of lung surfactant protein D on mucosal surface in human tissues. J Immunol. 2000;164: 5866-5870.
    • (2000) J Immunol , vol.164 , pp. 5866-5870
    • Madsen, J.1    Kliem, A.2    Tornøe3
  • 16
    • 0036373539 scopus 로고    scopus 로고
    • Absence of mutation in the NOD2/CARD15 gene among 483 Japanese patients with Crohn disease
    • Yamazaki K, Takazoe M, Tanaka T, et al. Absence of mutation in the NOD2/CARD15 gene among 483 Japanese patients with Crohn disease. J Hum Genet. 2002;47:460-472.
    • (2002) J Hum Genet , vol.47 , pp. 460-472
    • Yamazaki, K.1    Takazoe, M.2    Tanaka, T.3
  • 17
    • 12744274602 scopus 로고    scopus 로고
    • Association analysis of SLC22A4, SLC22A5 and DLG5 in Japanese patients with Crohn disease
    • Yamazaki K, Takazoe M, Tanaka T, et al. Association analysis of SLC22A4, SLC22A5 and DLG5 in Japanese patients with Crohn disease. J Hum Genet. 2004;49:664-668.
    • (2004) J Hum Genet , vol.49 , pp. 664-668
    • Yamazaki, K.1    Takazoe, M.2    Tanaka, T.3
  • 18
    • 34347357508 scopus 로고    scopus 로고
    • Association analysis of genetic variants in IL23R, ATG16L1 and 5q13.1 loci with Crohn disease in Japanese patients
    • Yamazaki K, Onouchi Y, Takazoe M, et al. Association analysis of genetic variants in IL23R, ATG16L1 and 5q13.1 loci with Crohn disease in Japanese patients. J Hum Genet. 2007;52:575-583.
    • (2007) J Hum Genet , vol.52 , pp. 575-583
    • Yamazaki, K.1    Onouchi, Y.2    Takazoe, M.3
  • 19
    • 34248136340 scopus 로고    scopus 로고
    • Inflammatory bowel disease: Clinical aspects and established and evolving therapies
    • Baumgart DC, Sndborn WJ. Inflammatory bowel disease: clinical aspects and established and evolving therapies. Lancet. 2007; 369:1641-1657.
    • (2007) Lancet , vol.369 , pp. 1641-1657
    • Baumgart, D.C.1    Sndborn, W.J.2
  • 20
    • 79959503826 scopus 로고    scopus 로고
    • The international HapMap project
    • International HapMap Consortium
    • International HapMap Consortium. The international HapMap project. Nature. 2003;426:789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 21
    • 43049085116 scopus 로고    scopus 로고
    • Association of SLC22A/5 polymorphisms with steroid responsiveness of inflammatory bowel disease in Japan
    • Nakahara S, Arimura Y, Saito K, et al. Association of SLC22A/5 polymorphisms with steroid responsiveness of inflammatory bowel disease in Japan. Dis Colon Rectum. 2008;51:598-603.
    • (2008) Dis Colon Rectum , vol.51 , pp. 598-603
    • Nakahara, S.1    Arimura, Y.2    Saito, K.3
  • 22
    • 13444269543 scopus 로고    scopus 로고
    • Haplovew: Analysis and visualization of LD and haplotype maps
    • Barrett JC, Fry B, Maller J, et al. Haplovew: analysis and visualization of LD and haplotype maps. Bioinformatics. 2005;21:263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3
  • 23
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M, Smith N, Donnelly P. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet. 2001;68: 978-989.
    • (2001) Am J Hum Genet , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.2    Donnelly, P.3
  • 24
    • 0242691208 scopus 로고    scopus 로고
    • A comparison of Bayesian methods for haplotype reconstruction from population genotype data
    • Stephens M, Donnelly P. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet. 2003;73:1162-1169.
    • (2003) Am J Hum Genet , vol.73 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 25
    • 3042591234 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping via cladistic analysis of single-nucleotide polymorphism haplotypes
    • Durrant C, Zondervan KT, Cardon LR, et al. Linkage disequilibrium mapping via cladistic analysis of single-nucleotide polymorphism haplotypes. Am J Hum Genet. 2004;75:35-43.
    • (2004) Am J Hum Genet , vol.75 , pp. 35-43
    • Durrant, C.1    Zondervan, K.T.2    Cardon, L.R.3
  • 26
    • 13444304428 scopus 로고    scopus 로고
    • Fine mapping functional sites or regions from case-control data using haplotypes of multiple linked SNPs
    • Cheng R, Ma JZ, Elston RC, et al. Fine mapping functional sites or regions from case-control data using haplotypes of multiple linked SNPs. Ann Hum Genet. 2005;69:102-112.
    • (2005) Ann Hum Genet , vol.69 , pp. 102-112
    • Cheng, R.1    Ma, J.Z.2    Elston, R.C.3
  • 27
    • 31744435871 scopus 로고    scopus 로고
    • Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies
    • Skol AD, Scott LJ, Abecasis GR, et al. Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies. Nat Genet. 2006;38:209-213.
    • (2006) Nat Genet , vol.38 , pp. 209-213
    • Skol, A.D.1    Scott, L.J.2    Abecasis, G.R.3
  • 28
    • 33748696976 scopus 로고    scopus 로고
    • GeneRecon - a coalescent based tool for fine-scale association mapping
    • Mailund T, Schierup MH, Pedersen CN, et al. GeneRecon - a coalescent based tool for fine-scale association mapping. Bioinformatics. 2006;22:2317-2318.
    • (2006) Bioinformatics , vol.22 , pp. 2317-2318
    • Mailund, T.1    Schierup, M.H.2    Pedersen, C.N.3
  • 29
    • 0036177752 scopus 로고    scopus 로고
    • Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies
    • Morris AP, Whittaker JC, Balding DJ. Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies. Am J Hum Genet. 2002;70:686-707.
    • (2002) Am J Hum Genet , vol.70 , pp. 686-707
    • Morris, A.P.1    Whittaker, J.C.2    Balding, D.J.3
  • 30
    • 33745599582 scopus 로고    scopus 로고
    • A flexible computational framework for detecting, characterizing and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility
    • Moore JH, Gilbert JC, Tsai C-T, et al. A flexible computational framework for detecting, characterizing and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility. J Theoret Biol. 2006;241:252-261
    • (2006) J Theoret Biol , vol.241 , pp. 252-261
    • Moore, J.H.1    Gilbert, J.C.2    Tsai, C.-T.3
  • 31
    • 34249997024 scopus 로고    scopus 로고
    • Replicating genotype-phenotype associations
    • Chanock SJ, Manolio T, Boehnke M, et al. Replicating genotype-phenotype associations. Nature. 2007;447:655-660.
    • (2007) Nature , vol.447 , pp. 655-660
    • Chanock, S.J.1    Manolio, T.2    Boehnke, M.3
  • 32
    • 67650239705 scopus 로고    scopus 로고
    • Integrating genetics, genomics and epigenomics to identify disease genes
    • Barnes MR, ed, 2nd ed. Chichester, UK: John Wiley & Sons;
    • Barnes MR. Integrating genetics, genomics and epigenomics to identify disease genes. In: Barnes MR, ed. Bioinformatics for the geneticist: a bioinformatics primer for the analysis of genetic data. 2nd ed. Chichester, UK: John Wiley & Sons; 2007:185-215.
    • (2007) Bioinformatics for the geneticist: A bioinformatics primer for the analysis of genetic data , pp. 185-215
    • Barnes, M.R.1
  • 33
    • 0036517472 scopus 로고    scopus 로고
    • A comprehensive review of genetic association studies
    • Hirshchorn JN, Lohmueller K, Byme E, et al. A comprehensive review of genetic association studies. Genet Med. 2002;4:45-61.
    • (2002) Genet Med , vol.4 , pp. 45-61
    • Hirshchorn, J.N.1    Lohmueller, K.2    Byme, E.3
  • 34
    • 0035179971 scopus 로고    scopus 로고
    • Replication validity of genetic association studies
    • Loannidis JP, Ntzani EE, Trikalinos TA, et al. Replication validity of genetic association studies. Nat Genet. 2001;29:306-309.
    • (2001) Nat Genet , vol.29 , pp. 306-309
    • Loannidis, J.P.1    Ntzani, E.E.2    Trikalinos, T.A.3
  • 35
    • 0037312921 scopus 로고    scopus 로고
    • Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease
    • Lohmueller KE, Pearce CL, Pike M, et al. Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease. Nat Genet. 2003;33:177-182.
    • (2003) Nat Genet , vol.33 , pp. 177-182
    • Lohmueller, K.E.1    Pearce, C.L.2    Pike, M.3
  • 36
    • 33749570519 scopus 로고    scopus 로고
    • Common genetic variants for breast cancer, 32 largely refuted candidates and larger prospects
    • Loannidis JP. Common genetic variants for breast cancer, 32 largely refuted candidates and larger prospects. J Natl Cancer Inst. 2006;98:1350-1353.
    • (2006) J Natl Cancer Inst , vol.98 , pp. 1350-1353
    • Loannidis, J.P.1
  • 37
    • 35348920637 scopus 로고    scopus 로고
    • Fine mapping versus replication in whole-genome association studies
    • Clarke GM, Carter KW, Palmer LJ, et al. Fine mapping versus replication in whole-genome association studies. Am J Hum Genet. 2007;81:995-1005.
    • (2007) Am J Hum Genet , vol.81 , pp. 995-1005
    • Clarke, G.M.1    Carter, K.W.2    Palmer, L.J.3
  • 38
    • 0141918823 scopus 로고    scopus 로고
    • By binding SIRPalpha or calreticulin/CD91, lung collectins act as dual function surveillance molecules to suppress or enhance inflammation
    • Gardai SJ, Xiao YQ, et al. By binding SIRPalpha or calreticulin/CD91, lung collectins act as dual function surveillance molecules to suppress or enhance inflammation. Cell. 2003;115:13-23.
    • (2003) Cell , vol.115 , pp. 13-23
    • Gardai, S.J.1    Xiao, Y.Q.2
  • 39
    • 19944430458 scopus 로고    scopus 로고
    • A common polymorphism in the SFTPD gene influences assembly, function, and concentration of surfactant protein D
    • Leth-Larsen R, Garred P, Jensenius H, et al. A common polymorphism in the SFTPD gene influences assembly, function, and concentration of surfactant protein D. J Immunol. 2005;174:1532-1538.
    • (2005) J Immunol , vol.174 , pp. 1532-1538
    • Leth-Larsen, R.1    Garred, P.2    Jensenius, H.3
  • 40
    • 0034791035 scopus 로고    scopus 로고
    • High-resolution haplotype structure in the human genome
    • Daly MJ, Rioux JD, Schaffner SF, et al. High-resolution haplotype structure in the human genome. Nat Genet. 2001;29:229-232.
    • (2001) Nat Genet , vol.29 , pp. 229-232
    • Daly, M.J.1    Rioux, J.D.2    Schaffner, S.F.3
  • 41
    • 33748804424 scopus 로고    scopus 로고
    • A tutorial on statistical methods for population association studies
    • Balding DJ. A tutorial on statistical methods for population association studies. Nat Rev Genet. 2006;7:781-791.
    • (2006) Nat Rev Genet , vol.7 , pp. 781-791
    • Balding, D.J.1
  • 42
    • 34547176642 scopus 로고    scopus 로고
    • Unravelling the pathogenesis of inflammatory bowel disease
    • Xavier RJ, Podolsky DK. Unravelling the pathogenesis of inflammatory bowel disease. Nature. 2007;448:427-434.
    • (2007) Nature , vol.448 , pp. 427-434
    • Xavier, R.J.1    Podolsky, D.K.2


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