메뉴 건너뛰기




Volumn 74, Issue 10, 2008, Pages 3048-3057

Phylogenetic analysis of members of the Phycodnaviridae virus family, using amplified fragments of the major capsid protein gene

Author keywords

[No Author keywords available]

Indexed keywords

DNA SEQUENCES; GENES; POPULATION DYNAMICS; VIRUSES;

EID: 44249093493     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02548-07     Document Type: Article
Times cited : (81)

References (53)
  • 2
    • 25144447544 scopus 로고    scopus 로고
    • Characterization of different viruses infecting the marine harmful algal bloom species Phaeocystis globosa
    • Baudoux, A. C., and C. P. Brussaard. 2005. Characterization of different viruses infecting the marine harmful algal bloom species Phaeocystis globosa. Virology 341:80-90.
    • (2005) Virology , vol.341 , pp. 80-90
    • Baudoux, A.C.1    Brussaard, C.P.2
  • 4
    • 3142570537 scopus 로고    scopus 로고
    • Global distribution of nearly identical phage-encoded DNA sequences
    • Breitbart, M., J. H. Miyake, and F. Rohwer. 2004. Global distribution of nearly identical phage-encoded DNA sequences. FEMS Microbiol. Lett. 236:249-256.
    • (2004) FEMS Microbiol. Lett , vol.236 , pp. 249-256
    • Breitbart, M.1    Miyake, J.H.2    Rohwer, F.3
  • 5
    • 1942441434 scopus 로고    scopus 로고
    • Viral control of phytoplankton populations - a review
    • Brussaard, C. P. 2004. Viral control of phytoplankton populations - a review. J. Eukaryot. Microbiol. 51:125-138.
    • (2004) J. Eukaryot. Microbiol , vol.51 , pp. 125-138
    • Brussaard, C.P.1
  • 6
    • 2942525125 scopus 로고    scopus 로고
    • Isolation and phylogenetic analysis of novel viruses infecting the phytoplankton Phaeocystis globosa (Prymnesiophyceae)
    • Brussaard, C. P., S. M. Short, C. M. Frederickson, and C. A. Suttle. 2004. Isolation and phylogenetic analysis of novel viruses infecting the phytoplankton Phaeocystis globosa (Prymnesiophyceae). Appl. Environ. Microbiol. 70: 3700-3705.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 3700-3705
    • Brussaard, C.P.1    Short, S.M.2    Frederickson, C.M.3    Suttle, C.A.4
  • 7
    • 0036692453 scopus 로고    scopus 로고
    • Isolation and characterization of a virus that infects Emiliania huxleyi (Haptophyta)
    • Castberg, T., R. Thyrhaug, A. Larsen, R. A. Sandaa, M. Heldal, and G. Bratbak. 2002. Isolation and characterization of a virus that infects Emiliania huxleyi (Haptophyta). J. Phycol. 38:767-774.
    • (2002) J. Phycol , vol.38 , pp. 767-774
    • Castberg, T.1    Thyrhaug, R.2    Larsen, A.3    Sandaa, R.A.4    Heldal, M.5    Bratbak, G.6
  • 8
    • 0028964507 scopus 로고
    • Amplification of DNA polymerase gene fragments from viruses infecting microalgae
    • Chen, F., and C. A. Suttle. 1995. Amplification of DNA polymerase gene fragments from viruses infecting microalgae. Appl. Environ. Microbiol. 61: 1274-1278.
    • (1995) Appl. Environ. Microbiol , vol.61 , pp. 1274-1278
    • Chen, F.1    Suttle, C.A.2
  • 9
    • 0030014666 scopus 로고    scopus 로고
    • Evolutionary relationships among large double-stranded DNA viruses that infect microalgae and other organisms as inferred from DNA polymerase genes
    • Chen, F., and C. A. Suttle. 1996. Evolutionary relationships among large double-stranded DNA viruses that infect microalgae and other organisms as inferred from DNA polymerase genes. Virology 219:170-178.
    • (1996) Virology , vol.219 , pp. 170-178
    • Chen, F.1    Suttle, C.A.2
  • 10
    • 0029762609 scopus 로고    scopus 로고
    • Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes
    • Chen, F., C. A. Suttle, and S. M. Short. 1996. Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes. Appl. Environ. Microbiol. 62:2869-2874.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 2869-2874
    • Chen, F.1    Suttle, C.A.2    Short, S.M.3
  • 11
    • 0347996076 scopus 로고    scopus 로고
    • Comparisons of two large phaeoviral genomes and evolutionary implications
    • Delaroque, N., W. Boland, D. G. Muller, and R. Knippers. 2003. Comparisons of two large phaeoviral genomes and evolutionary implications. J. Mol. Evol. 57:613-622.
    • (2003) J. Mol. Evol , vol.57 , pp. 613-622
    • Delaroque, N.1    Boland, W.2    Muller, D.G.3    Knippers, R.4
  • 12
    • 0035881839 scopus 로고    scopus 로고
    • The complete DNA sequence of the Ectocarpus siliculosus virus EsV-1 genome
    • Delaroque, N., D. G. Muller, G. Bothe, T. Pohl, R. Knippers, and W. Boland. 2001. The complete DNA sequence of the Ectocarpus siliculosus virus EsV-1 genome. Virology 287:112-132.
    • (2001) Virology , vol.287 , pp. 112-132
    • Delaroque, N.1    Muller, D.G.2    Bothe, G.3    Pohl, T.4    Knippers, R.5    Boland, W.6
  • 13
    • 33645070779 scopus 로고    scopus 로고
    • Phycodnaviruses: A peek at genetic diversity
    • Dunigan, D. D., L. A. Fitzgerald, and J. L. Van Etten. 2006. Phycodnaviruses: a peek at genetic diversity. Virus Res. 117:119-132.
    • (2006) Virus Res , vol.117 , pp. 119-132
    • Dunigan, D.D.1    Fitzgerald, L.A.2    Van Etten, J.L.3
  • 14
    • 0011334188 scopus 로고
    • Sinking rate of marine phytoplankton measured with a fluorometer
    • Eppley, R. W., R. W. Holmes, and J. D. H. Strickland. 1967. Sinking rate of marine phytoplankton measured with a fluorometer. J. Exp. Mar. Biol. Ecol. 1:191-208.
    • (1967) J. Exp. Mar. Biol. Ecol , vol.1 , pp. 191-208
    • Eppley, R.W.1    Holmes, R.W.2    Strickland, J.D.H.3
  • 15
    • 33846391192 scopus 로고    scopus 로고
    • Fitzgerald, L. A., M. V. Graves, X. Li, T. Feldblyum, J. Hartigan, and J. L. Van Etten. 2007. Sequence and annotation of the 314-kb MT325 and the 321-kb FR483 viruses that infect Chlorella Pbi. Virology 358:459-471.
    • Fitzgerald, L. A., M. V. Graves, X. Li, T. Feldblyum, J. Hartigan, and J. L. Van Etten. 2007. Sequence and annotation of the 314-kb MT325 and the 321-kb FR483 viruses that infect Chlorella Pbi. Virology 358:459-471.
  • 16
    • 33846362288 scopus 로고    scopus 로고
    • Sequence and annotation of the 369-kb N.Y.-2A and the 345-kb AR158 viruses that infect Chlorella NC64A
    • Fitzgerald, L. A., M. V. Graves, X. Li, T. Feldblyum, W. C. Nierman, and J. L. Van Etten. 2007. Sequence and annotation of the 369-kb N.Y.-2A and the 345-kb AR158 viruses that infect Chlorella NC64A. Virology 358:472-484.
    • (2007) Virology , vol.358 , pp. 472-484
    • Fitzgerald, L.A.1    Graves, M.V.2    Li, X.3    Feldblyum, T.4    Nierman, W.C.5    Van Etten, J.L.6
  • 17
    • 34247554844 scopus 로고    scopus 로고
    • Sequence and annotation of the 288-kb ATCV-1 virus that infects an endosymbiotic chlorella strain of the heliozoon Acanthocystis turfacea
    • Fitzgerald, L. A., M. V. Graves, X. Li, J. Hartigan, A. J. Pfitzner, E. Hoffart, and J. L. Van Etten. 2007. Sequence and annotation of the 288-kb ATCV-1 virus that infects an endosymbiotic chlorella strain of the heliozoon Acanthocystis turfacea. Virology 362:350-361.
    • (2007) Virology , vol.362 , pp. 350-361
    • Fitzgerald, L.A.1    Graves, M.V.2    Li, X.3    Hartigan, J.4    Pfitzner, A.J.5    Hoffart, E.6    Van Etten, J.L.7
  • 18
    • 33646598713 scopus 로고    scopus 로고
    • Hanson, L. A., M. R. Rudis, M. Vasquez-Lee, and R. D. Montgomery. 2006. A broadly applicable method to characterize large DNA viruses and adenoviruses based on the DNA polymerase gene. Virol. J. 3:28.
    • Hanson, L. A., M. R. Rudis, M. Vasquez-Lee, and R. D. Montgomery. 2006. A broadly applicable method to characterize large DNA viruses and adenoviruses based on the DNA polymerase gene. Virol. J. 3:28.
  • 19
    • 33645076499 scopus 로고    scopus 로고
    • Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
    • Iyer, L. M., S. Balaji, E. V. Koonin, and L. Aravind. 2006. Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Virus Res. 117:156-184.
    • (2006) Virus Res , vol.117 , pp. 156-184
    • Iyer, L.M.1    Balaji, S.2    Koonin, E.V.3    Aravind, L.4
  • 20
    • 0030451229 scopus 로고    scopus 로고
    • Isolation and characterization of a virus infecting Phaeocystis phouchetii (Prymnesiophyceae)
    • Jacobsen, A., G. Bratbak, and M. Heldal. 1996. Isolation and characterization of a virus infecting Phaeocystis phouchetii (Prymnesiophyceae). J. Phycol. 32:923-927.
    • (1996) J. Phycol , vol.32 , pp. 923-927
    • Jacobsen, A.1    Bratbak, G.2    Heldal, M.3
  • 21
    • 0030587386 scopus 로고    scopus 로고
    • Analysis of 76 kb of the chlorella virus PBCV-1 330-kb genome: Map positions 182 to 258
    • Kutish, G. F., Y. Li, Z. Lu, M. Furuta, D. L. Rock, and J. L. Van Etten. 1996. Analysis of 76 kb of the chlorella virus PBCV-1 330-kb genome: map positions 182 to 258. Virology 223:303-317.
    • (1996) Virology , vol.223 , pp. 303-317
    • Kutish, G.F.1    Li, Y.2    Lu, Z.3    Furuta, M.4    Rock, D.L.5    Van Etten, J.L.6
  • 22
    • 0031659932 scopus 로고    scopus 로고
    • The DNA polymerase gene of a brown algal virus: Structure and phylogeny
    • Lee, A. M., R. G. Ivey, and R. H. Meints. 1998. The DNA polymerase gene of a brown algal virus: structure and phylogeny. J. Phycol. 34:608-615.
    • (1998) J. Phycol , vol.34 , pp. 608-615
    • Lee, A.M.1    Ivey, R.G.2    Meints, R.H.3
  • 23
    • 0028803831 scopus 로고
    • Analysis of 43 kb of the chlorella virus PBCV-1 330-kb genome: Map positions 45 to 88
    • Li, Y., Z. Lu, D. E. Burbank, G. F. Kutish, D. L. Rock, and J. L. Van Etten. 1995. Analysis of 43 kb of the chlorella virus PBCV-1 330-kb genome: map positions 45 to 88. Virology 212:134-150.
    • (1995) Virology , vol.212 , pp. 134-150
    • Li, Y.1    Lu, Z.2    Burbank, D.E.3    Kutish, G.F.4    Rock, D.L.5    Van Etten, J.L.6
  • 24
    • 0030698072 scopus 로고    scopus 로고
    • Analysis of 74 kb of DNA located at the right end of the 330-kb chlorella virus PBCV-1 genome
    • Li, Y., Z. Lu, L. Sun, S. Ropp, G. F. Kutish, D. L. Rock, and J. L. Van Etten. 1997. Analysis of 74 kb of DNA located at the right end of the 330-kb chlorella virus PBCV-1 genome. Virology 237:360-377.
    • (1997) Virology , vol.237 , pp. 360-377
    • Li, Y.1    Lu, Z.2    Sun, L.3    Ropp, S.4    Kutish, G.F.5    Rock, D.L.6    Van Etten, J.L.7
  • 25
    • 0029918423 scopus 로고    scopus 로고
    • Analysis of 94 kb of the chlorella virus PBCV-1 330-kb genome: Map positions 88 to 182
    • Lu, Z., Y. Li, Q. Que, G. F. Kutish, D. L. Rock, and J. L. Van Etten. 1996. Analysis of 94 kb of the chlorella virus PBCV-1 330-kb genome: map positions 88 to 182. Virology 216:102-123.
    • (1996) Virology , vol.216 , pp. 102-123
    • Lu, Z.1    Li, Y.2    Que, Q.3    Kutish, G.F.4    Rock, D.L.5    Van Etten, J.L.6
  • 26
    • 0028797833 scopus 로고
    • Analysis of 45 kb of DNA located at the left end of the chlorella virus PBCV-1 genome
    • Lu, Z., Y. Li, Y. Zhang, G. F. Kutish, D. L. Rock, and J. L. Van Etten. 1995. Analysis of 45 kb of DNA located at the left end of the chlorella virus PBCV-1 genome. Virology 206:339-352.
    • (1995) Virology , vol.206 , pp. 339-352
    • Lu, Z.1    Li, Y.2    Zhang, Y.3    Kutish, G.F.4    Rock, D.L.5    Van Etten, J.L.6
  • 27
    • 3242887157 scopus 로고    scopus 로고
    • CD-search: Protein domain annotations on the fly
    • Marchler-Bauer, A., and S. H. Bryant. 2004. CD-search: protein domain annotations on the fly. Nucleic Acids Res. 32:327-331.
    • (2004) Nucleic Acids Res , vol.32 , pp. 327-331
    • Marchler-Bauer, A.1    Bryant, S.H.2
  • 28
    • 33846436106 scopus 로고    scopus 로고
    • Molecular dynamics of Emiliania huxleyi and cooccurring viruses during two separate mesocosm studies
    • Martinez, J. M., D. C. Schroeder, A. Larsen, G. Bratbak, and W. H. Wilson. 2007. Molecular dynamics of Emiliania huxleyi and cooccurring viruses during two separate mesocosm studies. Appl. Environ. Microbiol. 73:554-562.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 554-562
    • Martinez, J.M.1    Schroeder, D.C.2    Larsen, A.3    Bratbak, G.4    Wilson, W.H.5
  • 29
    • 39549096882 scopus 로고    scopus 로고
    • Monier, A., J. B. Larsen, R. A. Sandaa, G. Bratbak, J. M. Claverie, and H. Ogata. 2008. Marine mimivirus relatives are probably large algal viruses. Virol. J. 5:12.
    • Monier, A., J. B. Larsen, R. A. Sandaa, G. Bratbak, J. M. Claverie, and H. Ogata. 2008. Marine mimivirus relatives are probably large algal viruses. Virol. J. 5:12.
  • 30
    • 0028309407 scopus 로고
    • Viral mortality in the final stage of Heterosigma akashiwo (Raphidophyceae) red tide
    • Nagasaki, K., M. Ando, S. Itakura, I. Imai, and Y. Ishida. 1994. Viral mortality in the final stage of Heterosigma akashiwo (Raphidophyceae) red tide. J. Plankton Res. 16:1595-1599.
    • (1994) J. Plankton Res , vol.16 , pp. 1595-1599
    • Nagasaki, K.1    Ando, M.2    Itakura, S.3    Imai, I.4    Ishida, Y.5
  • 31
    • 15544374899 scopus 로고    scopus 로고
    • Algal viruses with distinct intraspecies host specificities include identical intein elements
    • Nagasaki, K., Y. Shirai, Y. Tomaru, K. Nishida, and S. Pietrokovski. 2005. Algal viruses with distinct intraspecies host specificities include identical intein elements. Appl. Environ. Microbiol. 71:3599-3607.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 3599-3607
    • Nagasaki, K.1    Shirai, Y.2    Tomaru, Y.3    Nishida, K.4    Pietrokovski, S.5
  • 32
    • 0001275436 scopus 로고    scopus 로고
    • Isolation of a virus infectious to the harmful bloom causing microalgae Heterosigma akashiwo (Raphidophyceae)
    • Nagasaki, K., and M. Yamaguchi. 1997. Isolation of a virus infectious to the harmful bloom causing microalgae Heterosigma akashiwo (Raphidophyceae). Aquat. Microb. Ecol. 13:135-140.
    • (1997) Aquat. Microb. Ecol , vol.13 , pp. 135-140
    • Nagasaki, K.1    Yamaguchi, M.2
  • 33
    • 0033558762 scopus 로고    scopus 로고
    • Genetic variation of chlorella viruses: Variable regions localized on the CVK2 genomic DNA
    • Nishida, K., Y. Kimura, T. Kawasaki, M. Fujie, and T. Yamada. 1999. Genetic variation of chlorella viruses: variable regions localized on the CVK2 genomic DNA. Virology 255:376-384.
    • (1999) Virology , vol.255 , pp. 376-384
    • Nishida, K.1    Kimura, Y.2    Kawasaki, T.3    Fujie, M.4    Yamada, T.5
  • 34
    • 0030203863 scopus 로고    scopus 로고
    • Page, R. D. M. 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357-358.
    • Page, R. D. M. 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357-358.
  • 35
    • 0032947324 scopus 로고    scopus 로고
    • Several genes in chlorella virus strain CvG-1 encode putative virion components
    • Plugge, B., B. Becker, and A. H. Wolf. 1999. Several genes in chlorella virus strain CvG-1 encode putative virion components. J. Gen. Virol. 80:1067-1072.
    • (1999) J. Gen. Virol , vol.80 , pp. 1067-1072
    • Plugge, B.1    Becker, B.2    Wolf, A.H.3
  • 37
    • 0035950929 scopus 로고    scopus 로고
    • Isolation and characterization of two viruses with large genome size infecting Chrysochromulina ericina (Prymnesiophyceae) and Pyramimonas orientalis (Prasinophyceae)
    • Sandaa, R. A., M. Heldal, T. Castberg, R. Thyrhaug, and G. Bratbak. 2001. Isolation and characterization of two viruses with large genome size infecting Chrysochromulina ericina (Prymnesiophyceae) and Pyramimonas orientalis (Prasinophyceae). Virology 290:272-280.
    • (2001) Virology , vol.290 , pp. 272-280
    • Sandaa, R.A.1    Heldal, M.2    Castberg, T.3    Thyrhaug, R.4    Bratbak, G.5
  • 39
    • 0036197501 scopus 로고    scopus 로고
    • Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature
    • Short, S. M., and C. A. Suttle. 2002. Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature. Appl. Environ. Microbiol. 68:1290-1296.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 1290-1296
    • Short, S.M.1    Suttle, C.A.2
  • 42
    • 2542454676 scopus 로고    scopus 로고
    • Comparative genomic analyses of frog virus 3, type species of the genus Ranavirus (family Iridoviridae)
    • Tan, W. G., T. J. Barkman, V. G. Chinchar, and K. Essani. 2004. Comparative genomic analyses of frog virus 3, type species of the genus Ranavirus (family Iridoviridae). Virology 323:70-84.
    • (2004) Virology , vol.323 , pp. 70-84
    • Tan, W.G.1    Barkman, T.J.2    Chinchar, V.G.3    Essani, K.4
  • 43
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 44
    • 0036232861 scopus 로고    scopus 로고
    • Cell cycle dependent virus production in marine phytoplankton
    • Thyrhaug, R., C. P. Brussaard, and G. Bratbak. 2002. Cell cycle dependent virus production in marine phytoplankton. J. Phycol. 38:338-343.
    • (2002) J. Phycol , vol.38 , pp. 338-343
    • Thyrhaug, R.1    Brussaard, C.P.2    Bratbak, G.3
  • 46
    • 0031005423 scopus 로고    scopus 로고
    • The complete DNA sequence of lymphocystis disease virus
    • Tidona, C. A., and G. Darai. 1997. The complete DNA sequence of lymphocystis disease virus. Virology 230:207-216.
    • (1997) Virology , vol.230 , pp. 207-216
    • Tidona, C.A.1    Darai, G.2
  • 47
    • 0031881860 scopus 로고    scopus 로고
    • Is the major capsid protein of iridoviruses a suitable target for the study of viral evolution?
    • Tidona, C. A., P. Schnitzler, R. Kehm, and G. Darai. 1998. Is the major capsid protein of iridoviruses a suitable target for the study of viral evolution? Virus Genes 16:59-66.
    • (1998) Virus Genes , vol.16 , pp. 59-66
    • Tidona, C.A.1    Schnitzler, P.2    Kehm, R.3    Darai, G.4
  • 51
    • 0031789556 scopus 로고    scopus 로고
    • Sequence comparison of the major capsid protein gene from 18 diverse iridoviruses
    • Webby, R., and J. Kalmakoff. 1998. Sequence comparison of the major capsid protein gene from 18 diverse iridoviruses. Arch. Virol. 143:1949-1966.
    • (1998) Arch. Virol , vol.143 , pp. 1949-1966
    • Webby, R.1    Kalmakoff, J.2
  • 53
    • 33645865546 scopus 로고    scopus 로고
    • Phylogenetic analysis of PgV-102P, a new virus from the English Channel that infects Phaeocystis globosa
    • Wilson, W. H., D. C. Schroeder, J. Ho, and M. Carity. 2006. Phylogenetic analysis of PgV-102P, a new virus from the English Channel that infects Phaeocystis globosa. J. Mar. Biol. Assoc. UK 86:485-490.
    • (2006) J. Mar. Biol. Assoc. UK , vol.86 , pp. 485-490
    • Wilson, W.H.1    Schroeder, D.C.2    Ho, J.3    Carity, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.