Enzymatic repair of 5-formyluracil. I. Excision of 5-formyluracil site- specifically incorporated into oligonucleotide substrates by AlkA protein (Escherichia coli 3-methyladenine DNA glycosylase II)

Journal of Biological Chemistry

Volumn 274, Issue 35, 1999, Pages 25136-25143

  Masaoka, Aya ^a   Terato, Hiroaki ^a   Kobayashi, Mutsumi ^a   Honsho, Akiko ^a   Ohyama, Yoshihiko ^a   Ide, Hiroshi ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

3 METHYLADENINE; 5 HYDROXYMETHYLURACIL; 7 METHYLGUANINE; ADENOSINE; DEOXYURIDINE DERIVATIVE; DNA; DNA GLYCOSYLTRANSFERASE; GUANINE; METHYLNITRONITROSOGUANIDINE; OLIGONUCLEOTIDE; REACTIVE OXYGEN METABOLITE; THYMINE; URACIL DERIVATIVE;

ARTICLE; CHEMICAL STRUCTURE; CONTROLLED STUDY; DNA REPAIR; OXIDATION; PRIORITY JOURNAL;

ADENINE; BASE PAIR MISMATCH; DNA DAMAGE; DNA GLYCOSYLASES; DNA REPAIR; ESCHERICHIA COLI; GUANINE; KINETICS; MAGNETIC RESONANCE SPECTROSCOPY; METHYLNITRONITROSOGUANIDINE; MOLECULAR STRUCTURE; N-GLYCOSYL HYDROLASES; OLIGODEOXYRIBONUCLEOTIDES; PENTOXYL; SUBSTRATE SPECIFICITY; THYMINE; URACIL;

EID: 0033609930     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.274.35.25136     Document Type: Article

References (68)

1. Friedberg, E. C., Walker, G. C., and Siede, W. (1995) DNA Repair and Mutagenesis, AMS Press, Washington, D. C.
2. Lindahl, T. (1996) Philos. Trans. R. Soc. Lond. B Biol. Sci. 351, 1529-1538
3. von Sonntag, C. (1987) Chemical Basis of Radiation Biology, Taylor & Francis, New York
4. Breen, A. P., and Murphy, J. A. (1995) Free Radical Biol. Med. 18, 1033-1077
5. Demple, B., and Harrison, L. (1994) Annu. Rev. Biochem. 63, 915-948
6. Demple, B., and Linn, S. (1980) Nature 287, 203-208
7. Katcher, H. L., and Wallace, S. S. (1983) Biochemistry 22, 4071-4081
8. Breimer, L. H., and Lindahl, T. (1984) J. Biol. Chem. 259, 5543-5548
9. Didzaroglu, M., Laval, J., and Boiteux, S. (1993) Biochemistry 32, 12105-12111
10. Melamede, R. J., Hatahet, Z., Kow, Y. W., Ide, H., and Wallace, S. S. (1994) Biochemistry 33, 1255-1264
11. Cunningham, R. P., and Weiss, B. (1985) Proc. Natl. Acad. Sci. U. S. A. 82, 474-478
12. Asahara, H., Wistort, P. M., Bank, J. F., Bakerian, R. H., and Cunningham, R. P. (1989) Biochemistry 28, 4444-4449
13. Jiang, D., Hatahet, Z., Blaisdell, J. O., Melamede, R. J., and Wallace, S. S. (1997) J. Bacteriol. 179, 3773-3782
14. Saito, Y., Uraki, F., Nakajima, S., Asaeda, A., Ono, K., Kubo, K., and Yamamoto, K. (1997) J. Bacteriol. 179, 3773-3785
15. Roldan-Arjona, T., Anselmino, C., and Lindahl, T. (1996) Nucleic Acids Res. 24, 3307-3312
16. Aspinwall, R., Rothwell, D. G., Roldan-Arjona, T., Anselmino, C., Ward, C. J., Cheadle, J. P., Sampson, J. R., Lindahl, T., Harris, P. C., and Hickson, I. D. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 109-114
17. Hilbert, T. P., Chaung, W., Boorstein, R. J., Cunningham, R. P., and Teebor, G. W. (1997) J. Biol. Chem. 272, 6733-6740
18. Sarker, A. H., Ikeda, S., Nakano, H., Terato, H., Ide, H., Imai, K., Akiyama, K., Tsutsui, K., Bo, Z., Kubo, K., Yamamoto, K., Yasui, A., Yoshida, M. C., and Seki, S. (1998) J. Mol. Biol. 273, 21585-21593
19. Row, Y. W., and Wallace, S. S. (1985) Proc. Natl. Acad. Sci. U. S. A. 82, 8354-8358
20. Wallace, S. S. (1988) Environ. Mol. Mutagen. 12, 431-477
21. Purmal, A. A., Rabow, L. E., Lampman, G. W., Cunningham, R. P., and Kow, Y. W. (1996) Mutat. Res. 364, 193-207
22. Breimer, L. H., and Lindahl, T. (1980) Nucleic Acids Res. 8, 6199-6211
23. Sanderson, B. J. S., Chang, C.-N., Grollman, A. P., and Henner, W. D. (1989) Biochemistry 28, 3894-3901
24. Robson, C. N., Milne, A. M., Pappin, D. J., and Hickson, I. D. (1991) Nucleic Acids Res. 19, 1087-1092
25. Breimer, L. H., and Lindahl, T. (1985) Biochemistry 24, 4018-4022
26. Hollstein, M. C., Brooks, P., Linn, S., and Ames, B. (1984) Proc. Natl. Acad. Sci. U. S. A. 81, 4003-4007
27. Cannon-Carlson, S. V., Gokhale, H., Teebor, G. W. (1989) J. Biol. Chem. 264, 13306-13312
28. Levy, D. D., and Teebor, G. W. (1991) Nucleic Acids Res. 19, 3337-3343
29. Yoshida, M., Makino, K., Morita, H., Terato, H., Ohyama, Y., and Ide, H. (1997) Nucleic Acids Res. 25, 1570-1577
30. Terato, H., Morita, H., Ohyama, Y., and Ide, H. (1998) Nucleosides Nucleotides 17, 131-141
31. Kasai, H., Iida, A., Yamaizumi, Z., Nishimura, S., and Tanooka, H. (1990) Mutat. Res. 243, 249-253
32. Bjelland, S., Eide, L., Time, R. W., Stote, R., Eftedal, I., Volden, G., and Seeberg, E. (1995) Biochemistry 34, 14758-14764
33. Bjelland, S., Birkeland, N., Benneche, T., Volden, G., and Seeberg, E. (1994) J. Biol. Chem. 269, 30489-30495
34. Zhang, Q.-M., Fujimoto, J., and Yonei, S. (1995) Int. J. Radiat. Biol. 68, 603-607
35. Ono, A., Okamoto, T., Inada, M., Nara, H., and Matsuda, A. (1994) Chem. Pharm. Bull. 42, 2231-2237
36. Wang, G., Palejwala, V. A., Dunman, P. M., Aviv, D. H., Murphy, H. S., Rahman, M. S., and Humayun, M. Z. (1995) Genetics 141, 813-823
37. Volkert, M. R., Nguyen, D. C., and Beard, K. C. (1986) Genetics 112, 11-26
38. Asaeda, A., Ide, H., Tano, K., Takamori, Y., and Kubo, K. (1998) Nucleosides Nucleotides 17, 503-513
39. Aburatani, H., Hippo, Y., Ishida, T., Takashima, R., Matsuba, C., Kodama, T., Takao, M., Yasui, A., Yamamoto, K., Asano, M., Fukasawa, K., Yoshinari, T., Inoue, H., Ohtsuka, E., and Nishimura, S. (1997) Cancer Res. 57, 2151-2156
40. Nakabeppu, Y., Miyata, T., Kondo, H., Iwanaga, S., and Sekiguchi, M. (1984) J. Biol. Chem. 259, 13730-13736
41. Ide, H., Okagami, M., Murayama, H., Kimura, Y., and Makino, K. (1993) Biochem. Mol. Biol. Int. 31, 485-491
42. Kao, J. Y., Goljer, I., Phan, T. A., and Bolton, P. H. (1993) J. Biol. Chem. 268, 17787-17793
43. Saparbaev, M., and Laval, J. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 5873-5877
44. O'Connor, T. R., and Laval, J. (1990) EMBO J. 9, 3337-3342
45. Engelward, B. P., Boosalis, M. S., Chen, B. J., Deng, Z., Siciliano, M. J., and Samson, L. D. (1993) Carcinogenesis 14, 175-181
46. Chakravarti, D., Ibeanu, G. C., Tano, K., and Mitra, S. (1991) J. Biol. Chem. 266, 15710-15715
47. O'Connor, T., and Laval, J. (1991) Biochem. Biophys. Res. Commun. 176, 1170-1177
48. Samson, L. D., Derfler, B., Boosalis, M., and Call, K. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 9127-9131
49. Rosenquist, T. A., Zharkov, D. O., and Grollman, A. P. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 7429-7434
50. Radicella, J. P., Dherin, C., Desmaze, C., Fox, M. S., and Boiteux, S. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 8010-8015
51. Roldan-Arjona, T., Wei, Y.-F., Carter, K. C., Klungland, A., Anselmino, C., Wang, R.-P., Augustus, M., and Lindahl, T. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 8016-8020
52. Arai, K., Morishita, K., Shinmura, K., Kohno, T., Kim, S.-R., Nohmi, T., Taniwaki, M., Ohwada, S., and Yokota, J. (1997) Oncogene 14, 2857-2861
53. Thomas, L., Yang, C.-H., and Goldthwait, D. A. (1982) Biochem. J. 21, 1162-1169
54. Lindahl, T., Sedgwick, B., Sekiguchi, M., and Nakabeppu, Y. (1988) Annu. Rev. Biochem. 57, 133-157
55. Seeberg, E., Eide, L., and Bjoras, M. (1995) Trends Biochem. Sci. 20, 391-397
56. Singer, B., and Hang, B. (1997) Chem. Res. Toxicol. 10, 713-732
57. O'Connor, T. R. (1993) Nucleic Acids Res. 21, 5561-5569
58. Saparbaev, M., Kleibl, K., and Laval, J. (1995) Nucleic Acids Res. 23, 3750-3755
59. Pegg, A. E. (1984) Cancer Invest. 2, 223-231
60. Berdal, K. G., Johansen, R. F., and Seeberg, E. (1998) EMBO J. 17, 363-367
61. Yamagata, Y., Kato, M., Odawara, K., Tokuno, Y., Nakashima, Y., Tatsushima, N., Yasumura, K., Tomita, K., Ihara, K., Fujii, Y., Nakabeppu, Y., Sekiguchi, M., and Fujii, S. (1996) Cell 86, 311-319
62. Labahn, J., Scharer, O. D., Long, A., Ezaz-Nikpay, K., Verdine, G. L., and Ellenberger, T. E. (1996) Cell 86, 321-329
63. MaCarthy, T. V., Karran, P., and Lindahl, T. (1984) EMBO J. 3, 545-550
64. Lindahl, T. (1982) Annu. Rev. Biochem. 51, 61-87
65. Lawley, P. D., and Brookes, P. (1963) Biochem. J. 89, 127-139
66. Singer, B., Kroger, M., and Carrano, M. (1978) Biochemistry 17, 1246-1250
67. Scharer, O. D., Ortholand, J.-Y., Ganesan, A., Ezaz-Nikpay, K., and Verdine, G. L. (1995) J. Am. Chem. Soc. 117, 6623-6624, and references therein
68. Terato, H., Masaoka, A., Kobayashi, M., Fukushima, S., Ohyama, Y., Yoshida, M., and Ide, H., J. Biol. Chem. 274, 25144-25150