The hepatitis delta virus RNA genome interacts with eEF1A1, p54nrb, hnRNP-L, GAPDH and ASF/SF2

Virology

Volumn 390, Issue 1, 2009, Pages 71-78

  Sikora, Dorota ^a   Greco Stewart, Valerie S ^a   Miron, Paul ^a   Pelchat, Martin ^a  

^a UNIVERSITY OF OTTAWA   (Canada)

Author keywords

Alternative splicing factor ASF SF2; eEF1A1; Eukaryotic elongation factor 1A1; GAPDH; Glyceraldehyde 3 phosphate dehydrogenase; Hepatitis delta virus; Heterogeneous nuclear ribonucleoprotein L; hnRNP L; p54nrb; RNA virus

Indexed keywords

GENOMIC RNA; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN L; PROTEIN ASF/SF2; PROTEIN EEF1A1; PROTEIN P54; RIBONUCLEOPROTEIN; RNA BINDING PROTEIN; UNCLASSIFIED DRUG; VIRUS PROTEIN; VIRUS RNA;

AFFINITY CHROMATOGRAPHY; ARTICLE; CONTROLLED STUDY; HELA CELL; HEPATITIS DELTA VIRUS; HUMAN; HUMAN CELL; IMMUNOPRECIPITATION; IN VITRO STUDY; MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE BINDING SITE; PATHOGENICITY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CROSS LINKING; PROTEIN DOMAIN; PROTEIN RNA BINDING; RNA PURIFICATION; VIRUS CELL INTERACTION;

BASE SEQUENCE; BINDING SITES; CELL NUCLEUS; GENOME, VIRAL; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASES; HELA CELLS; HEPATITIS DELTA VIRUS; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEIN L; HOST-PATHOGEN INTERACTIONS; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEAR MATRIX-ASSOCIATED PROTEINS; NUCLEAR PROTEINS; NUCLEIC ACID CONFORMATION; OCTAMER TRANSCRIPTION FACTORS; PEPTIDE ELONGATION FACTOR 1; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, VIRAL; RNA-BINDING PROTEINS; VIRUS REPLICATION;

EUKARYOTA; HEPATITIS DELTA VIRUS; RNA VIRUSES;

EID: 67649518050     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2009.04.022     Document Type: Article

References (64)

1. Abrahem A., and Pelchat M. Formation of an RNA polymerase II preinitiation complex on an RNA promoter derived from the hepatitis delta virus RNA genome. Nucleic Acids Res. 36 (2008) 5201-5211
2. Barbini L., Rodriguez J., Dominguez F., and Vega F. Glyceraldehyde-3-phosphate dehydrogenase exerts different biologic activities in apoptotic and proliferating hepatocytes according to its subcellular localization. Mol. Cell. Biochem. 300 (2007) 19-28
3. Beard M.R., MacNaughton T.B., and Gowans E.J. Identification and characterization of a hepatitis delta virus RNA transcriptional promoter. J. Virol. 70 (1996) 4986-4995
4. Bichko V.V., and Taylor J.M. Redistribution of the delta antigens in cells replicating the genome of hepatitis delta virus. J. Virol. 70 (1996) 8064-8070
5. Blackwell J.L., and Brinton M.A. Translation elongation factor-1 alpha interacts with the 3′ stem-loop region of West Nile virus genomic RNA. J. Virol. 71 (1997) 6433-6444
6. Castiglioni F., Tagliabue E., Campiglio M., Pupa S.M., Balsari A., and Menard S. Role of exon-16-deleted HER2 in breast carcinomas. Endocr. Relat. Cancer. 13 (2006) 221-232
7. Chang J., Nie X., Chang H.E., Han Z., and Taylor J. Transcription of hepatitis delta virus RNA by RNA polymerase II. J. Virol. 82 (2008) 1118-1127
8. Chen P.J., Kalpana G., Goldberg J., Mason W., Werner B., Gerin J., and Taylor J. Structure and replication of the genome of the hepatitis delta virus. Proc. Natl. Acad. Sci. U. S. A. 83 (1986) 8774-8778
9. Circle D.A., Neel O.D., Robertson H.D., Clarke P.A., and Mathews M.B. Surprising specificity of PKR binding to delta agent genomic RNA. RNA 3 (1997) 438-448
10. Cole S.M., Gowans E.J., Macnaughton T.B., Hall P.D., and Burrell C.J. Direct evidence for cytotoxicity associated with expression of hepatitis delta virus antigen. Hepatology 13 (1991) 845-851
11. Cramer P., Caceres J.F., Cazalla D., Kadener S., Muro A.F., Baralle F.E., and Kornblihtt A.R. Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer. Mol. Cell. 4 (1999) 251-258
12. Das T., Mathur M., Gupta A.K., Janssen G.M., and Banerjee A.K. RNA polymerase of vesicular stomatitis virus specifically associates with translation elongation factor-1 alphabetagamma for its activity. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 1449-1454
13. De B.P., Gupta S., Zhao H., Drazba J.A., and Banerjee A.K. Specific interaction in vitro and in vivo of glyceraldehyde-3-phosphate dehydrogenase and LA protein with cis-acting RNAs of human parainfluenza virus type 3. J. Biol. Chem. 271 (1996) 24728-24735
14. Dong B., Horowitz D.S., Kobayashi R., and Krainer A.R. Purification and cDNA cloning of HeLa cell p54nrb, a nuclear protein with two RNA recognition motifs and extensive homology to human splicing factor PSF and Drosophila NONA/BJ6. Nucleic Acids Res. 21 (1993) 4085-4092
15. Emili A., Shales M., McCracken S., Xie W., Tucker P.W., Kobayashi R., Blencowe B.J., and Ingles C.J. Splicing and transcription-associated proteins PSF and p54nrb/nonO bind to the RNA polymerase II CTD. RNA 8 (2002) 1102-1111
16. Farci P. Delta hepatitis: an update. J. Hepatol. 39 Suppl 1 (2003) S212-S219
17. Fattovich G., Stroffolini T., Zagni I., and Donato F. Hepatocellular carcinoma in cirrhosis: incidence and risk factors. Gastroenterology 127 (2004) S35-S50
18. Filipovska J., and Konarska M.M. Specific HDV RNA-templated transcription by pol II in vitro. RNA 6 (2000) 41-54
19. Fukuhara Y., Takeshima T., Kashiwaya Y., Shimoda K., Ishitani R., and Nakashima K. GAPDH knockdown rescues mesencephalic dopaminergic neurons from MPP+-induced apoptosis. Neuroreport 12 (2001) 2049-2052
20. Greco-Stewart V.S., Thibault C.S., and Pelchat M. Binding of the polypyrimidine tract-binding protein-associated splicing factor (PSF) to the hepatitis delta virus RNA. Virology 356 (2006) 35-44
21. Greco-Stewart V.S., Miron P., Abrahem A., and Pelchat M. The human RNA polymerase II interacts with the terminal stem-loop regions of the hepatitis delta virus RNA genome. Virology 357 (2007) 68-78
22. Greco-Stewart V.S., Schissel E., and Pelchat M. The hepatitis delta virus RNA genome interacts with the human RNA polymerases I and III. Virology 386 (2009) 12-15
23. Gudima S., Wu S.Y., Chiang C.M., Moraleda G., and Taylor J. Origin of hepatitis delta virus mRNA. J. Virol. 74 (2000) 7204-7210
24. Harris K.S., Xiang W., Alexander L., Lane W.S., Paul A.V., and Wimmer E. Interaction of poliovirus polypeptide 3CDpro with the 5′ and 3′ termini of the poliovirus genome. Identification of viral and cellular cofactors needed for efficient binding. J. Biol. Chem. 269 (1994) 27004-27014
25. Hartmann A.M., Nayler O., Schwaiger F.W., Obermeier A., and Stamm S. The interaction and colocalization of Sam68 with the splicing-associated factor YT521-B in nuclear dots is regulated by the Src family kinase p59(fyn). Mol. Biol. Cell. 10 (1999) 3909-3926
26. Hastings M.L., and Krainer A.R. Pre-mRNA splicing in the new millennium. Curr. Opin. Cell. Biol. 13 (2001) 302-309
27. Huang Y., and Steitz J.A. Splicing factors SRp20 and 9G8 promote the nucleocytoplasmic export of mRNA. Mol. Cell. 7 (2001) 899-905
28. Ishitani R., and Chuang D.M. Glyceraldehyde-3-phosphate dehydrogenase antisense oligodeoxynucleotides protect against cytosine arabinonucleoside-induced apoptosis in cultured cerebellar neurons. Proc. Natl. Acad. Sci. U. S. A. 93 (1996) 9937-9941
29. Ishitani R., Tanaka M., Sunaga K., Katsube N., and Chuang D.M. Nuclear localization of overexpressed glyceraldehyde-3-phosphate dehydrogenase in cultured cerebellar neurons undergoing apoptosis. Mol. Pharmacol. 53 (1998) 701-707
30. Joshi R.L., Ravel J.M., and Haenni A.L. Interaction of turnip yellow mosaic virus Val-RNA with eukaryotic elongation factor EF-1 [alpha]. Search for a function. EMBO J. 5 (1986) 1143-1148
31. Kanai Y., Dohmae N., and Hirokawa N. Kinesin transports RNA: isolation and characterization of an RNA-transporting granule. Neuron 43 (2004) 513-525
32. Kuo M.Y., Goldberg J., Coates L., Mason W., Gerin J., and Taylor J. Molecular cloning of hepatitis delta virus RNA from an infected woodchuck liver: sequence, structure, and applications. J. Virol. 62 (1988) 1855-1861
33. Kuo M.Y., Chao M., and Taylor J. Initiation of replication of the human hepatitis delta virus genome from cloned DNA: role of delta antigen. J. Virol. 63 (1989) 1945-1950
34. Lai M.M. Cellular factors in the transcription and replication of viral RNA genomes: a parallel to DNA-dependent RNA transcription. Virology 244 (1998) 1-12
35. Lazinski D.W., and Taylor J.M. Relating structure to function in the hepatitis delta virus antigen. J. Virol. 67 (1993) 2672-2680
36. Lee E.J., Jo M., Park J., Zhang W., and Lee J.H. Alternative splicing variants of IRF-1 lacking exons 7, 8, and 9 in cervical cancer. Biochem. Biophys. Res. Commun. 347 (2006) 882-888
37. Lin S.S., Chang S.C., Wang Y.H., Sun C.Y., and Chang M.F. Specific interaction between the hepatitis delta virus RNA and glyceraldehyde 3-phosphate dehydrogenase: an enhancement on ribozyme catalysis. Virology 271 (2000) 46-57
38. Liu X., and Mertz J.E. HnRNP L binds a cis-acting RNA sequence element that enables intron-dependent gene expression. Genes Dev. 9 (1995) 1766-1780
39. Li X., and Manley J.L. Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability. Cell 122 (2005) 365-378
40. Li X., Wang J., and Manley J.L. Loss of splicing factor ASF/SF2 induces G2 cell cycle arrest and apoptosis, but inhibits internucleosomal DNA fragmentation. Genes Dev. 19 (2005) 2705-2714
41. Li Y.J., Macnaughton T., Gao L., and Lai M.M. RNA-templated replication of hepatitis delta virus: genomic and antigenomic RNAs associate with different nuclear bodies. J. Virol. 80 (2006) 6478-6486
42. Macnaughton T.B., Shi S.T., Modahl L.E., and Lai M.M. Rolling circle replication of hepatitis delta virus RNA is carried out by two different cellular RNA polymerases. J. Virol. 76 (2002) 3920-3927
43. McCracken S., Fong N., Yankulov K., Ballantyne S., Pan G., Greenblatt J., Patterson S.D., Wickens M., and Bentley D.L. The C-terminal domain of RNA polymerase II couples mRNA processing to transcription. Nature 385 (1997) 357-361
44. Mitsuzawa H., Kimura M., Kanda E., and Ishihama A. Glyceraldehyde-3-phosphate dehydrogenase and actin associate with RNA polymerase II and interact with its Rpb7 subunit. FEBS Lett. 579 (2005) 48-52
45. Modahl L.E., Macnaughton T.B., Zhu N., Johnson D.L., and Lai M.M. RNA-dependent replication and transcription of hepatitis delta virus RNA involve distinct cellular RNA polymerases. Mol. Cell. Biol. 20 (2000) 6030-6039
46. Moraleda G., and Taylor J. Host RNA polymerase requirements for transcription of the human hepatitis delta virus genome. J. Virol. 75 (2001) 10161-10169
47. Morgenegg G., Winkler G.C., Hubscher U., Heizmann C.W., Mous J., and Kuenzle C.C. Glyceraldehyde-3-phosphate dehydrogenase is a nonhistone protein and a possible activator of transcription in neurons. J. Neurochem. 47 (1986) 54-62
48. Mota S., Mendes M., Penque D., Coelho A.V., and Cunha C. Changes in the proteome of Huh7 cells induced by transient expression of hepatitis D virus RNA and antigens. J. Proteomics 71 (2008) 71-79
49. Niranjanakumari S., Lasda E., Brazas R., and Garcia-Blanco M.A. Reversible cross-linking combined with immunoprecipitation to study RNA-protein interactions in vivo. Methods 26 (2002) 182-190
50. Pelchat M., and Perreault J.P. Binding site of Escherichia coli RNA polymerase to an RNA promoter. Biochem. Biophys. Res. Commun. 319 (2004) 636-642
51. Pelchat M., Cote F., and Perreault J.P. Study of the polymerization step of the rolling circle replication of peach latent mosaic viroid. Arch. Virol. 146 (2001) 1753-1763
52. Ponting C.P. Tudor domains in proteins that interact with RNA. Trends Biochem. Sci. 22 (1997) 51-52
53. Pospisil H., Herrmann A., Butherus K., Pirson S., Reich J.G., and Kemmner W. Verification of predicted alternatively spliced Wnt genes reveals two new splice variants (CTNNB1 and LRP5) and altered Axin-1 expression during tumour progression. BMC Genomics 7 (2006) 148
54. Romeo R., Del Ninno E., Rumi M., Russo A., Sangiovanni A., de Franchis R., Ronchi G., and Colombo M. A 28-year study of the course of hepatitis delta infection, a risk factor for cirrhosis and hepatocellular carcinoma. Gastroenterology 136 (1996) 1629-1638
55. Schultz D.E., Hardin C.C., and Lemon S.M. Specific interaction of glyceraldehyde 3-phosphate dehydrogenase with the 5′-nontranslated RNA of hepatitis A virus. J. Biol. Chem. 271 (1996) 14134-14142
56. Song X., Wang B., Bromberg M., Hu Z., Konigsberg W., and Garen A. Retroviral-mediated transmission of a mouse VL30 RNA to human melanoma cells promotes metastasis in an immunodeficient mouse model. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 6269-6273
57. Song X., Sui A., and Garen A. Binding of mouse VL30 retrotransposon RNA to PSF protein induces genes repressed by PSF: effects on steroidogenesis and oncogenesis. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 621-626
58. Song X., Sun Y., and Garen A. Roles of PSF protein and VL30 RNA in reversible gene regulation. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 12189-12193
59. Su C.W., Huang Y.H., Huo T.I., Shih H.H., Sheen I.J., Chen S.W., Lee P.C., Lee S.D., and Wu J.C. Genotypes and viremia of hepatitis B and D viruses are associated with outcomes of chronic hepatitis D patients. Gastroenterology 130 (2006) 1625-1635
60. Taylor J.M. Hepatitis delta virus. Virology 344 (2006) 71-76
61. Vioque A., and Altman S. Affinity chromatography with an immobilized RNA enzyme. Proc. Natl. Acad. Sci. U. S. A. 83 (1986) 5904-5908
62. Wang D., Pearlberg J., Liu Y.T., and Ganem D. Deleterious effects of hepatitis delta virus replication on host cell proliferation. J. Virol. 75 (2001) 3600-3604
63. Wong S.K., and Lazinski D.W. Replicating hepatitis delta virus RNA is edited in the nucleus by the small form of ADAR1. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 15118-15123
64. Yamaguchi Y., Delehouzee S., and Handa H. HIV and hepatitis delta virus: evolution takes different paths to relieve blocks in transcriptional elongation. Microbes Infect. 4 (2002) 1169-1175