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Volumn 26, Issue 7, 2009, Pages 1651-1661

Sixty million years in evolution of soft grain trait in grasses: Emergence of the softness locus in the common ancestor of pooideae and ehrhartoideae, after their divergence from panicoideae

Author keywords

Comparative genomics; Evolution; Grain endosperm softness; Poaceae

Indexed keywords

GENE PRODUCT; PROLAMIN; PUROINDOLINE A; PUROINDOLINE B; UNCLASSIFIED DRUG;

EID: 67649331694     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msp076     Document Type: Article
Times cited : (36)

References (49)
  • 1
    • 38549144294 scopus 로고    scopus 로고
    • Molecular genetics of puroindolines and related genes: Allelic diversity in wheat and other grasses
    • Bhave M, Morris CF. 2008. Molecular genetics of puroindolines and related genes: allelic diversity in wheat and other grasses. Plant Mol Biol. 66:205-219.
    • (2008) Plant Mol Biol , vol.66 , pp. 205-219
    • Bhave, M.1    Morris, C.F.2
  • 2
    • 0027223990 scopus 로고
    • Complete amino acid sequence of puroindoline, a new basic and cystine-rich protein with a unique tryptophan-rich domain, isolated from wheat endosperm by Triton X-114 phase partitioning
    • Blochet JE, Chevalier C, Forest E, Pebay-Peyroula E, Gautier MF, Joudrier P, Pezolet M, Marion D. 1993. Complete amino acid sequence of puroindoline, a new basic and cystine-rich protein with a unique tryptophan-rich domain, isolated from wheat endosperm by Triton X-114 phase partitioning. FEBS Lett. 329:336-340.
    • (1993) FEBS Lett , vol.329 , pp. 336-340
    • Blochet, J.E.1    Chevalier, C.2    Forest, E.3    Pebay-Peyroula, E.4    Gautier, M.F.5    Joudrier, P.6    Pezolet, M.7    Marion, D.8
  • 3
    • 0002781261 scopus 로고
    • Gluten proteins
    • Bushuk W, Tkachuk R, editors, St Paul MN, American Association of Cereal Chemists. p
    • Blochet JE, Kaboulou A, Compoint JP, Marion D. 1991. Gluten proteins. In: Bushuk W, Tkachuk R, editors. Gluten Proteins 1990. St Paul (MN): American Association of Cereal Chemists. p. 314-325.
    • (1991) Gluten Proteins 1990 , pp. 314-325
    • Blochet, J.E.1    Kaboulou, A.2    Compoint, J.P.3    Marion, D.4
  • 4
    • 33846936303 scopus 로고    scopus 로고
    • Comparison of orthologous loci from small grass genomes Brachypodium and rice: Implications for wheat genomics and grass genome annotation
    • Bossolini E, Wicker T, Knobel PA, Keller B. 2007. Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation. Plant J. 49:704-717.
    • (2007) Plant J , vol.49 , pp. 704-717
    • Bossolini, E.1    Wicker, T.2    Knobel, P.A.3    Keller, B.4
  • 5
    • 16544383364 scopus 로고    scopus 로고
    • Comparative sequence analysis of the region harboring the hardness locus in barley and its colinear region in rice
    • Caldwell KS, Langridge P, Powell W. 2004. Comparative sequence analysis of the region harboring the hardness locus in barley and its colinear region in rice. Plant Physiol. 136:3177-3190.
    • (2004) Plant Physiol , vol.136 , pp. 3177-3190
    • Caldwell, K.S.1    Langridge, P.2    Powell, W.3
  • 7
    • 3042623788 scopus 로고    scopus 로고
    • Sequencing of the Triticum monococcum hardness locus reveals good microcolinearity with rice
    • Chantret N, Cenci A, Sabot F, Anderson O, Dubcovsky J. 2004. Sequencing of the Triticum monococcum hardness locus reveals good microcolinearity with rice. Mol Genet Genomics. 271:377-386.
    • (2004) Mol Genet Genomics , vol.271 , pp. 377-386
    • Chantret, N.1    Cenci, A.2    Sabot, F.3    Anderson, O.4    Dubcovsky, J.5
  • 8
    • 85115040045 scopus 로고    scopus 로고
    • Chantret N, Salse J, Sabot F, et al. (19 co-authors). 2005. Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops). Plant Cell. 17:1033-1045.
    • Chantret N, Salse J, Sabot F, et al. (19 co-authors). 2005. Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops). Plant Cell. 17:1033-1045.
  • 9
    • 40949145616 scopus 로고    scopus 로고
    • Chantret N, Salse J, Sabot F, et al. (17 co-authors). 2008. Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species. J Mol Evol. 66:138-150.
    • Chantret N, Salse J, Sabot F, et al. (17 co-authors). 2008. Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species. J Mol Evol. 66:138-150.
  • 10
    • 58149344008 scopus 로고    scopus 로고
    • Charles M, Belcram H, Just J, et al. (13 co-authors). 2008. Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat. Genetics. 180:1071-1086.
    • Charles M, Belcram H, Just J, et al. (13 co-authors). 2008. Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat. Genetics. 180:1071-1086.
  • 13
    • 0001306938 scopus 로고
    • The nucleotide sequence of a cDNA for a major prolamin (avenin) in oat (Avena sativa L. cultivar Hinoat) which reveals homology with oat globulin
    • Fabijanski S, Chang S-C, Dukiandjiev S, Bahramian MB, Ferrara P. 1988. The nucleotide sequence of a cDNA for a major prolamin (avenin) in oat (Avena sativa L. cultivar Hinoat) which reveals homology with oat globulin. Biochem Physiol Pflanzen. 183:143-152.
    • (1988) Biochem Physiol Pflanzen , vol.183 , pp. 143-152
    • Fabijanski, S.1    Chang, S.-C.2    Dukiandjiev, S.3    Bahramian, M.B.4    Ferrara, P.5
  • 14
    • 41149135379 scopus 로고    scopus 로고
    • Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q
    • Faris JD, Zhang Z, Fellers JP, Gill BS. 2008. Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q. Funct Integr Genomics. 8:149-164.
    • (2008) Funct Integr Genomics , vol.8 , pp. 149-164
    • Faris, J.D.1    Zhang, Z.2    Fellers, J.P.3    Gill, B.S.4
  • 15
    • 6944234051 scopus 로고    scopus 로고
    • Construction and analysis of a BAC library in the grass Brachypodium sylvaticum: Its use as a tool to bridge the gap between rice and wheat in elucidating gene content
    • Foote TN, Griffiths S, Allouis S, Moore G. 2004. Construction and analysis of a BAC library in the grass Brachypodium sylvaticum: its use as a tool to bridge the gap between rice and wheat in elucidating gene content. Funct Integr Genomics. 4:26-33.
    • (2004) Funct Integr Genomics , vol.4 , pp. 26-33
    • Foote, T.N.1    Griffiths, S.2    Allouis, S.3    Moore, G.4
  • 16
    • 34848926223 scopus 로고    scopus 로고
    • Gao S, Gu YQ, Wu J, et al. (11 co-authors). 2007. Rapid evolution and complex structural organization in genomic regions harboring multiple prolamin genes in the polyploid wheat genome. Plant Mol Biol. 65:189-203.
    • Gao S, Gu YQ, Wu J, et al. (11 co-authors). 2007. Rapid evolution and complex structural organization in genomic regions harboring multiple prolamin genes in the polyploid wheat genome. Plant Mol Biol. 65:189-203.
  • 17
    • 0036213939 scopus 로고    scopus 로고
    • Evolutionary dynamics of grass genomes
    • Gaut BS. 2002. Evolutionary dynamics of grass genomes. New Phytol. 154:15-28.
    • (2002) New Phytol , vol.154 , pp. 15-28
    • Gaut, B.S.1
  • 18
    • 0028406286 scopus 로고
    • Triticum aestivum puroindolines, two basic cystine-rich seed proteins: CDNA sequence analysis and developmental gene expression
    • Gautier MF, Aleman ME, Guirao A, Marion D, Joudrier P. 1994. Triticum aestivum puroindolines, two basic cystine-rich seed proteins: cDNA sequence analysis and developmental gene expression. Plant Mol Biol. 25:43-57.
    • (1994) Plant Mol Biol , vol.25 , pp. 43-57
    • Gautier, M.F.1    Aleman, M.E.2    Guirao, A.3    Marion, D.4    Joudrier, P.5
  • 19
    • 0034646623 scopus 로고    scopus 로고
    • Puroindoline genes are highly conserved in diploid ancestor wheats and related species but absent in tetraploid Triticum species
    • Gautier MF, Cosson P, Guirao A, Alary M, Joudrier P. 2000. Puroindoline genes are highly conserved in diploid ancestor wheats and related species but absent in tetraploid Triticum species. Plant Sci. 153:81-91.
    • (2000) Plant Sci , vol.153 , pp. 81-91
    • Gautier, M.F.1    Cosson, P.2    Guirao, A.3    Alary, M.4    Joudrier, P.5
  • 20
    • 33846621532 scopus 로고    scopus 로고
    • Gsp-1 genes comprise a multigene family in wheat that exhibits a unique combination of sequence diversity yet conservation
    • Gollan P, Smith K, Bhave M. 2007. Gsp-1 genes comprise a multigene family in wheat that exhibits a unique combination of sequence diversity yet conservation. J Cereal Sci. 45:184-198.
    • (2007) J Cereal Sci , vol.45 , pp. 184-198
    • Gollan, P.1    Smith, K.2    Bhave, M.3
  • 21
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: A database and an electronic journal of repetitive elements
    • Jurka J. 2000. Repbase update: a database and an electronic journal of repetitive elements. Trends Genet. 16:418-420.
    • (2000) Trends Genet , vol.16 , pp. 418-420
    • Jurka, J.1
  • 22
    • 0030094146 scopus 로고    scopus 로고
    • CENSOR - a program for identification and elimination of repetitive elements from DNA sequences
    • Jurka J, Klonowski P, Dagman V, Pelton P. 1996. CENSOR - a program for identification and elimination of repetitive elements from DNA sequences. Comput Chem. 20:119-121.
    • (1996) Comput Chem , vol.20 , pp. 119-121
    • Jurka, J.1    Klonowski, P.2    Dagman, V.3    Pelton, P.4
  • 24
    • 0035103949 scopus 로고    scopus 로고
    • Evolutionary history of the grasses
    • Kellogg EA. 2001. Evolutionary history of the grasses. Plant Physiol. 125:1198-1205.
    • (2001) Plant Physiol , vol.125 , pp. 1198-1205
    • Kellogg, E.A.1
  • 25
    • 0022419276 scopus 로고
    • Molecular evolution of the seed storage proteins of barley, rye and wheat
    • Kreis M, Forde BG, Rahman S, Miflin BJ, Shewry PR. 1985. Molecular evolution of the seed storage proteins of barley, rye and wheat. J Mol Biol. 183:499-502.
    • (1985) J Mol Biol , vol.183 , pp. 499-502
    • Kreis, M.1    Forde, B.G.2    Rahman, S.3    Miflin, B.J.4    Shewry, P.R.5
  • 26
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5:150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 27
    • 67649377866 scopus 로고    scopus 로고
    • Law CN, Young CF, Brown JWS, Snape JW, Worland AJ. 1978. The study of grain protein control in wheat using whole chromosomes substitution lines. In: I.A.E. Agency. 1978. Seed protein improvement by nuclear techniques. Vienna (Austria): I.A.E. Agency. p. 483-502.
    • Law CN, Young CF, Brown JWS, Snape JW, Worland AJ. 1978. The study of grain protein control in wheat using whole chromosomes substitution lines. In: I.A.E. Agency. 1978. Seed protein improvement by nuclear techniques. Vienna (Austria): I.A.E. Agency. p. 483-502.
  • 28
    • 40749132979 scopus 로고    scopus 로고
    • Recurrent deletions of puroindoline genes at the grain hardness locus in four independent lineages of polyploid wheat
    • Li W, Huang L, Gill BS. 2008. Recurrent deletions of puroindoline genes at the grain hardness locus in four independent lineages of polyploid wheat. Plant Physiol. 146:200-212.
    • (2008) Plant Physiol , vol.146 , pp. 200-212
    • Li, W.1    Huang, L.2    Gill, B.S.3
  • 29
    • 33750274240 scopus 로고    scopus 로고
    • Molecular evolution of the puroindoline-a, puroindoline-b, and grain softness protein-1 genes in the tribe Triticeae
    • Massa AN, Morris CF. 2006. Molecular evolution of the puroindoline-a, puroindoline-b, and grain softness protein-1 genes in the tribe Triticeae. J Mol Evol. 63:526-536.
    • (2006) J Mol Evol , vol.63 , pp. 526-536
    • Massa, A.N.1    Morris, C.F.2
  • 30
    • 0037433054 scopus 로고    scopus 로고
    • LTR-STRUC: A novel search and identification program for LTR retrotransposons
    • McCarthy EM, McDonald JF. 2003. LTR-STRUC: a novel search and identification program for LTR retrotransposons. Bioinformatics. 19:362-367.
    • (2003) Bioinformatics , vol.19 , pp. 362-367
    • McCarthy, E.M.1    McDonald, J.F.2
  • 31
    • 33846186442 scopus 로고    scopus 로고
    • Immunodetection and immunolocalization of tryptophanins in oat (Avena sativa L.) seeds
    • Mohammadi M, Zaidi MA, Ochalski A, Tanchak MA, Altosaar I. 2007. Immunodetection and immunolocalization of tryptophanins in oat (Avena sativa L.) seeds. Plant Sci. 172:579-587.
    • (2007) Plant Sci , vol.172 , pp. 579-587
    • Mohammadi, M.1    Zaidi, M.A.2    Ochalski, A.3    Tanchak, M.A.4    Altosaar, I.5
  • 32
    • 0036010779 scopus 로고    scopus 로고
    • Puroindolines: The molecular genetic basis of wheat grain hardness
    • Morris CF. 2002. Puroindolines: the molecular genetic basis of wheat grain hardness. Plant Mol Biol. 48:633-647.
    • (2002) Plant Mol Biol , vol.48 , pp. 633-647
    • Morris, C.F.1
  • 33
    • 33644543728 scopus 로고    scopus 로고
    • Identification of a new class of recombinant prolamin genes in wheat
    • Nagy IJ, Takacs I, Juhasz A, Tamas L, Bedo Z. 2005. Identification of a new class of recombinant prolamin genes in wheat. Genome. 48:840-847.
    • (2005) Genome , vol.48 , pp. 840-847
    • Nagy, I.J.1    Takacs, I.2    Juhasz, A.3    Tamas, L.4    Bedo, Z.5
  • 34
    • 3042836334 scopus 로고    scopus 로고
    • Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
    • Paterson AH, Bowers JE, Chapman BA. 2004. Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc Natl Acad Sci USA. 101:9903-9908.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 9903-9908
    • Paterson, A.H.1    Bowers, J.E.2    Chapman, B.A.3
  • 35
    • 58449137410 scopus 로고    scopus 로고
    • Paterson AH, Bowers JE, Bruggmann R, et al. (45 co-authors). 2009. The Sorghum bicolor genome and the diversification of grasses. Nature. 457:551-556.
    • Paterson AH, Bowers JE, Bruggmann R, et al. (45 co-authors). 2009. The Sorghum bicolor genome and the diversification of grasses. Nature. 457:551-556.
  • 36
    • 27944489518 scopus 로고    scopus 로고
    • Dinosaur coprolites and the early evolution of grasses and grazers
    • Prasad V, Stromberg CA, Alimohammadian H, Sahni A. 2005. Dinosaur coprolites and the early evolution of grasses and grazers. Science. 310:1177-1180.
    • (2005) Science , vol.310 , pp. 1177-1180
    • Prasad, V.1    Stromberg, C.A.2    Alimohammadian, H.3    Sahni, A.4
  • 38
    • 0005691076 scopus 로고
    • Flour proteins: Structure and functionality in baked products
    • Blanshard JMV, Frazier PJ, Galliard T, editors, London: The Royal Society of Chemistry. p
    • Schofield JD. 1986. Flour proteins: structure and functionality in baked products. In: Blanshard JMV, Frazier PJ, Galliard T, editors. Chemistry and physics of baking. London: The Royal Society of Chemistry. p. 14-29.
    • (1986) Chemistry and physics of baking , pp. 14-29
    • Schofield, J.D.1
  • 40
    • 19044365083 scopus 로고    scopus 로고
    • The classification, functions and evolutionary relationships of plant proteins in relation to food allergens
    • Mills ENC, Shewry PR, editors, Oxford UK, Blackwell Science. p
    • Shewry PR, Jenkins J, Beaudoin F, Mills ENC. 2004. The classification, functions and evolutionary relationships of plant proteins in relation to food allergens. In: Mills ENC, Shewry PR, editors. Plant food allergens. Oxford (UK): Blackwell Science. p. 24-41.
    • (2004) Plant food allergens , pp. 24-41
    • Shewry, P.R.1    Jenkins, J.2    Beaudoin, F.3    Mills, E.N.C.4
  • 41
    • 11144334766 scopus 로고    scopus 로고
    • Isolation and characterisation of friabilin genes in rye
    • Simeone MC, Lafiandra D. 2005. Isolation and characterisation of friabilin genes in rye. J Cereal Sci. 41:115-122.
    • (2005) J Cereal Sci , vol.41 , pp. 115-122
    • Simeone, M.C.1    Lafiandra, D.2
  • 42
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
    • Sonnhammer EL, Durbin R. 1995. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene. 167:GC1-GC10.
    • (1995) Gene , vol.167
    • Sonnhammer, E.L.1    Durbin, R.2
  • 43
    • 0032500703 scopus 로고    scopus 로고
    • Tryptophanins: Isolation and molecular characterization of oat cDNA clones encoding proteins structurally related to puroindoline and wheat grain softness proteins
    • Tanchak MA, Schernthaner JP, Giband M, Altosaar I. 1998. Tryptophanins: isolation and molecular characterization of oat cDNA clones encoding proteins structurally related to puroindoline and wheat grain softness proteins. Plant Sci. 137:173-184.
    • (1998) Plant Sci , vol.137 , pp. 173-184
    • Tanchak, M.A.1    Schernthaner, J.P.2    Giband, M.3    Altosaar, I.4
  • 45
    • 57149102681 scopus 로고    scopus 로고
    • Unraveling ancient hexaploidy through multiplyaligned angiosperm gene maps
    • Tang H, Wang X, Bowers JE, Ming R, Alam M, Paterson AH. 2008. Unraveling ancient hexaploidy through multiplyaligned angiosperm gene maps. Genome Res. 18:1944-1954.
    • (2008) Genome Res , vol.18 , pp. 1944-1954
    • Tang, H.1    Wang, X.2    Bowers, J.E.3    Ming, R.4    Alam, M.5    Paterson, A.H.6
  • 46
    • 37249045857 scopus 로고    scopus 로고
    • Extensive concerted evolution of rice paralogs and the road to regaining independence
    • Wang X, Tang H, Bowers JE, Feltus FA, Paterson AH. 2007. Extensive concerted evolution of rice paralogs and the road to regaining independence. Genetics. 177:1753-1763.
    • (2007) Genetics , vol.177 , pp. 1753-1763
    • Wang, X.1    Tang, H.2    Bowers, J.E.3    Feltus, F.A.4    Paterson, A.H.5
  • 47
    • 0037700013 scopus 로고    scopus 로고
    • TREP: A database for Triticeae repetitive elements
    • Wicker T, Matthews D, Keller B. 2002. TREP: a database for Triticeae repetitive elements. Trends Plant Sci. 7:561-562.
    • (2002) Trends Plant Sci , vol.7 , pp. 561-562
    • Wicker, T.1    Matthews, D.2    Keller, B.3
  • 48
    • 36249023071 scopus 로고    scopus 로고
    • Wicker T, Sabot F, Hua-Van A, et al. (13 co-authors). 2007. A unified classification system for eukaryotic transposable elements. Nat Rev Genet. 8:973-982.
    • Wicker T, Sabot F, Hua-Van A, et al. (13 co-authors). 2007. A unified classification system for eukaryotic transposable elements. Nat Rev Genet. 8:973-982.
  • 49
    • 0034764976 scopus 로고    scopus 로고
    • Genomics analysis of genes expressed in maize endosperm identifies novel seed proteins and clarifies patterns of zein gene expression
    • Woo YM, Hu DW, Larkins BA, Jung R. 2001. Genomics analysis of genes expressed in maize endosperm identifies novel seed proteins and clarifies patterns of zein gene expression. Plant Cell. 13:2297-2317.
    • (2001) Plant Cell , vol.13 , pp. 2297-2317
    • Woo, Y.M.1    Hu, D.W.2    Larkins, B.A.3    Jung, R.4


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