Transcriptome analysis reveals differentially expressed storage protein transcripts in seeds of Aegilops and wheat

Journal of Cereal Science

Volumn 44, Issue 1, 2006, Pages 75-85

  Kan, Yunchao ^a,b   Wan, Yongfang ^a   Beaudoin, Frederic ^a   Leader, David J ^a   Edwards, Keith ^c   Poole, Rebecca ^c   Wang, Daowen ^b   Mitchell, Rowan A C ^a   Shewry, Peter R ^a  

^a ROTHAMSTED RESEARCH   (United Kingdom)

^b INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^c UNIVERSITY OF BRISTOL   (United Kingdom)

Author keywords

Avenin like proteins; Grain development; Processing quality; Transcriptome

Indexed keywords

AEGILOPS; AVENA; CAUDATA; TRITICUM AESTIVUM;

EID: 33744547992     PISSN: 07335210     EISSN: 10959963     Source Type: Journal    
DOI: 10.1016/j.jcs.2006.04.004     Document Type: Article

References (41)

1. Allen R.D., Cohen E.A., Vonder Haar R.A., Adams C.A., Nessler C.L., and Thomas T.L. Sequence and expression of a gene encoding an albumin storage protein in sunflower. Molecular and General Genetics 210 (1987) 211-218
2. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J.H., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25 (1997) 3389-3402
3. Anderson O.D., Hsia C.C., Adalsteins A.E., Lew E.J.-L., and Kasarda D.D. Identification of several new classes of low-molecular-weight wheat gliadin-related proteins and genes. Theoretical and Applied Genetics 103 (2001) 307-315
4. Aragoncillo C., Sanchez-Monge R., and Salcedo G. Two groups of low-molecular-weight hydrophobic proteins from barley endosperm. Journal of Experimental Botany 32 (1981) 1279-1286
5. Brown J.C., Jolliffe N.A., Frigerio L., and Roberts L.M. Sequence-specific, Golgi-dependent vacuolar targeting of castor bean 2S albumin. Plant Journal 36 (2003) 711-719
6. Chang S.J., Puryea J., and Cairney J. A simple and efficient method for isolating RNA from pine tree. Plant Molecular Biology Reporter 11 (1993) 113-116
7. Clarke B.C., Hobbs M., Skylas D., and Appels R. Genes active in developing wheat endosperm. Functional and Integrative Genomics 1 (2000) 44-55
8. Clarke B.C., Phongkham T., Gianibelli M.C., Beasley H., and Bekes F. The characterisation and mapping of a family of LMW-gliadin genes: effects on dough properties and bread volume. Theoretical and Applied Genetics 106 (2003) 629-635
9. D'Hondt K., Bosch D., Van Damme J., Goethals M., Vandekerckhove J., and Krebbers E. An aspartic proteinase present in seeds cleaves Arabidopsis 2S albumin precursors in vitro. Journal of Biological Chemistry 268 (1993) 20884-20891
10. Douliez J.-P., Michan T., Elmorjani K., and Marion D. Structure, biological and technological functions of lipid transfer proteins and indolines, the major lipid binding proteins from cereal kernels. Journal of Cereal Science 32 (2000) 1-20
11. D'Ovidio R., and Masci S. The low-molecular-weight glutenin subunits of wheat gluten. Journal of Cereal Science 39 (2004) 321-339
12. DuPont F.M., Chan R., Lopez R., and Vensel W.H. Sequential extraction and quantitative recovery of gliadins, glutenins and other proteins from small samples of wheat flour. Journal of Agriculture and Food Chemistry 53 (2005) 1575-1584
13. Dvorak J., Luo M.C., and Yang Z.L. Restriction fragment length polymorphism and divergence in the genomic regions of high and low recombination in self-fertilizing and cross-fertilizing Aegilops species. Genetics 148 (1998) 423-434
14. Feldman M., and Sears E.R. The wild gene resources of wheat. Scientific American January (1981) 98-101
15. Feldman M., Lupton F.G.H., and Miller T.E. Wheats Triticum spp (Gramineae-Triticinae). In: Smartt J., and Simmonds N.W. (Eds). Evolution of Crop Plants (1995), Longman Scientific and Technical, England 184-192
16. Gibbings J.G., Cook B.P., Dufault M.R., Madden S.L., Khuri S., Turnbull C.J., and Dunwell J.M. Global transcript analysis of rice leaf and seed using SAGE technology. Plant Biotechnology Journal 1 (2003) 271-285
17. Hara-Hishimura I., Takeuchi Y., Inoue I., and Nishimura M. Vesicle transport and processing of the precursor to 2S albumin in pumpkin. Plant Journal 4 (1993) 793-800
18. Irwin S.D., Keen J.N., Findlay J.B., and Lord J.M. The Ricinus communis 2S albumin precursor: a single preproprotein may be processed into two different heterodimeric storage proteins. Molecular and General Genetics 222 (1990) 400-408
19. Jones H.D. Wheat transformation: current technology and applications to grain development and composition. Journal of Cereal Science 41 (2005) 137-147
20. José-Estanyol M., and Puigdoménech P. Plant cell wall glycoproteins and their genes. Plant Physiology and Biochemistry 38 (2000) 97-108
21. Knott D.R. Transferring alien genes to wheat. In: Heynes E.G. (Ed). Wheat and Wheat Improvement (1987), American Society of Agronomy Inc., Madison, Wisconsin, USA 462-471
22. Kreis M., Forde B.G., Rahman S., Miflin B.J., and Shewry P.R. Molecular evolution of the seed storage proteins of barley, rye and wheat. Journal of Molecular Biology 183 (1985) 499-502
23. Kreis M., Shewry P.R., Forde B.G., Forde J., and Miflin B.J. Structure and evolution of seed storage proteins and their genes, with particular reference to those of wheat, barley and rye. In: Miflin B.J. (Ed). Oxford Surveys of Plant Cell and Molecular Biology vol. 2 (1985), Oxford University Press, Oxford, UK 253-317
24. Linc G., Friebe B.R., Kynast R.G., Molnar-Lang M., Köszegi B., Sutka J., and Gill B.S. Molecular cytogenetic analysis of Aegilops cylindrica. Host Genome 42 (1999) 497-503
25. Miller T.E. Systematics and evolution. In: Lupton F.G.H. (Ed). Wheat Breeding: Its Scientific Basis (1987), Chapman and Hall, NY, USA 1-49
26. Mu{combining double acute accent}ntz K., Blattner F.R., and Shutov A.D. Legumains-a family of asparagine-specific cysteine endopeptidases involved in propolypeptide processing and protein breakdown in plants. Journal of Plant Physiology 159 (2002) 1281-1293
27. Prada J., Sanchez-Monge R., Salcedo G., and Aragoncillo C. Isolation of the major low-molecular-weight gliadins. Plant Science Letters 25 (1982) 281-289
28. Rocher A., Calero M., Soriano F., and Mendez E. Identification of major rye secalins as coeliac immunoreactive proteins. Biochimica et Biophysica Acta 1295 (1996) 13-22
29. Salcedo G., Prada J., and Aragoncillo C. Low MW gliadin-like proteins from wheat endosperm. Phytochemistry 18 (1979) 725-727
30. Salcedo G., Prada J., Sanchez-Monge R., and Aragoncillo C. Aneuploid analysis of low-molecular-weight gliadins from wheat. Theoretical and Applied Genetics 56 (1980) 65-69
31. Salcedo G., Sanchez-Monge R., Argamenteria A., and Aragoncillo C. Low-molecular-weight prolamins: purification of a component from barley endosperm. Journal of Agriculture and Food Chemistry 30 (1982) 1155-1157
32. Shewry P.R., and Tatham A.S. The prolamin storage proteins of cereal seeds: structure and evolution. Biochemical Journal 267 (1990) 1-12
33. Shewry P.R., and Tatham A.S. The characteristics, structures and evolutionary relationships of prolamins. In: Shewry P.R., and Casey R. (Eds). Seed Proteins (1999), Kluwer, Dordrecht 11-33
34. Shewry P.R., Tatham A.S., and Halford N.G. The prolamins of the Triticeae. In: Shewry P.R., and Casey R. (Eds). Seed Proteins (1999), Kluwer, Dordrecht 35-78
35. Shewry P.R., Jenkins J., Beaudoin F., and Mills E.N.C. The classification, functions and evolutionary relationships of plant proteins in relation to food allergens. In: Mills E.N.C., and Shewry P.R. (Eds). Plant Food Allergens (2004), Blackwell Science, Oxford, UK 24-41
36. Thoyts P.J.E., Napier J.A., Millichip M., Stobart A.K., Griffiths W.T., Tatham A.S., and Shewry P.R. Characterization of a sunflower seed albumin which associates with oil bodies. Plant Science 118 (1996) 119-125
37. Vaag, P., Cameron-Mills, V., Sorensen, M.B., 2000. 17 kDa foam protein. International patent application number WO 00/14237.
38. Vensel W.H., Tanaka C.K., Cai N., Wong J.H., Buchanan B.B., and Hurkman W.J. Developmental changes in the metabolic protein profiles of wheat endosperm. Proteomics 5 (2005) 1594-1611
39. Wan Y., Liu K., Wang D., and Shewry P.R. High-molecular-weight glutenin subunits in the Cylindropyrum and Vertebrata section of the Aegilops genus and identification of subunits related to those encoded by the Dx alleles of common wheat. Theoretical and Applied Genetics 101 (2000) 879-884
40. Wan Y., Yan Z., Liu K., Zheng Y., D'Ovidio R., Shewry P.R., Halford N.G., and Wang D. Comparative analysis of the D genome-encoded high-molecular weight subunits of glutenin. Theoretical and Applied Genetics 111 (2005) 1183-1190
41. Wilson I.D., Barker G.L.A., Beswick R.W., Shepherd S.K., Lu C., Coghill J.A., Edwards D., Owen P., Lyons R., Parker J.S., Lenton J.R., Holdsworth M.J., Shewry P.R., and Edwards K.J. A transcriptomics resource for wheat functional genomics. Plant Biotechnology Journal 2 (2004) 495-506