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Volumn 26, Issue 7, 2009, Pages 1435-1439

Can indirect tests detect a known recombination event in human mtDNA?

Author keywords

Detection; Human; Indirect; MtDNA; Recombination

Indexed keywords

MITOCHONDRIAL DNA;

EID: 67649317029     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msp073     Document Type: Article
Times cited : (15)

References (41)
  • 1
    • 0019423856 scopus 로고    scopus 로고
    • Anderson S, Bankier AT, Barrell BG, et al. (14 co-authors). 1981. Sequence and organization of the human mitochondrial genome. Nature. 290(5806):457-465.
    • Anderson S, Bankier AT, Barrell BG, et al. (14 co-authors). 1981. Sequence and organization of the human mitochondrial genome. Nature. 290(5806):457-465.
  • 2
    • 0033601201 scopus 로고    scopus 로고
    • Linkage disequilibrium and recombination inhominid mitochondrial DNA
    • Awadalla P, Eyre-Walker A, Smith JM. 1999. Linkage disequilibrium and recombination inhominid mitochondrial DNA. Science. 286(5449):2524-2525.
    • (1999) Science , vol.286 , Issue.5449 , pp. 2524-2525
    • Awadalla, P.1    Eyre-Walker, A.2    Smith, J.M.3
  • 3
    • 33646167864 scopus 로고    scopus 로고
    • A simple and robust statistical test for detecting the presence of recombination
    • Bruen TC, Philippe H, Bryant D. 2006. A simple and robust statistical test for detecting the presence of recombination. Genetics. 172(4):2665-2681.
    • (2006) Genetics , vol.172 , Issue.4 , pp. 2665-2681
    • Bruen, T.C.1    Philippe, H.2    Bryant, D.3
  • 4
    • 0029148702 scopus 로고
    • Population-growth and earths human carrying-capacity
    • Cohen JE. 1995. Population-growth and earths human carrying-capacity. Science. 269(5222):341-346.
    • (1995) Science , vol.269 , Issue.5222 , pp. 341-346
    • Cohen, J.E.1
  • 7
    • 0034992037 scopus 로고    scopus 로고
    • Phylogenetic network for European mtDNA
    • Finnila S, Lehtonen MS, Majamaa K. 2001. Phylogenetic network for European mtDNA. Am J Hum Genet. 68(6):1475-1484.
    • (2001) Am J Hum Genet , vol.68 , Issue.6 , pp. 1475-1484
    • Finnila, S.1    Lehtonen, M.S.2    Majamaa, K.3
  • 8
    • 0032912338 scopus 로고    scopus 로고
    • Population dynamics of HIV-1 inferred from gene sequences
    • Grassly NC, Harvey PH, Holmes EC. 1999. Population dynamics of HIV-1 inferred from gene sequences. Genetics. 151(2):427-438.
    • (1999) Genetics , vol.151 , Issue.2 , pp. 427-438
    • Grassly, N.C.1    Harvey, P.H.2    Holmes, E.C.3
  • 9
    • 18344366125 scopus 로고    scopus 로고
    • Herrnstadt C, Elson JL, Fahy E, et al. (11 co-authors). 2002. Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for themajor African, Asian, and European haplogroups. Am J Hum Genet. 70(5):1152-1171.
    • Herrnstadt C, Elson JL, Fahy E, et al. (11 co-authors). 2002. Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for themajor African, Asian, and European haplogroups. Am J Hum Genet. 70(5):1152-1171.
  • 10
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • Hill WG, Robertson A. 1968. Linkage disequilibrium in finite populations. Theor Appl Genet. 38:226-231.
    • (1968) Theor Appl Genet , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.2
  • 11
    • 0034619822 scopus 로고    scopus 로고
    • Mitochondrial genome variation and the origin of modern humans
    • Ingman M, Kaessmann H, Paabo S, Gyllensten U. 2000. Mitochondrial genome variation and the origin of modern humans. Nature. 408(6813):708-713.
    • (2000) Nature , vol.408 , Issue.6813 , pp. 708-713
    • Ingman, M.1    Kaessmann, H.2    Paabo, S.3    Gyllensten, U.4
  • 12
    • 0035986881 scopus 로고    scopus 로고
    • Recombination or mutational hot spots in human mtDNA?
    • Innan H, Nordborg M. 2002. Recombination or mutational hot spots in human mtDNA? Mol Biol Evol. 19(7):1122-1127.
    • (2002) Mol Biol Evol , vol.19 , Issue.7 , pp. 1122-1127
    • Innan, H.1    Nordborg, M.2
  • 13
    • 0029963710 scopus 로고    scopus 로고
    • A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences
    • Jakobsen IB, Easteal S. 1996. A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences. Comput Appl Biosci. 12(4):291-295.
    • (1996) Comput Appl Biosci , vol.12 , Issue.4 , pp. 291-295
    • Jakobsen, I.B.1    Easteal, S.2
  • 14
    • 0034674138 scopus 로고    scopus 로고
    • Questioning evidence for recombination in human mitochondrial DNA
    • Jorde LB, Bamshad M. 2000. Questioning evidence for recombination in human mitochondrial DNA. Science. 288: 1931a.
    • (2000) Science , vol.288
    • Jorde, L.B.1    Bamshad, M.2
  • 15
    • 0032006951 scopus 로고    scopus 로고
    • Using mitochondrial and nuclear DNA markers to reconstruct human evolution
    • Jorde LB, Bamshad M, Rogers AR. 1998. Using mitochondrial and nuclear DNA markers to reconstruct human evolution. Bioessays. 20(2):126-136.
    • (1998) Bioessays , vol.20 , Issue.2 , pp. 126-136
    • Jorde, L.B.1    Bamshad, M.2    Rogers, A.R.3
  • 16
    • 0034674138 scopus 로고    scopus 로고
    • Questioning evidence for recombination in human mitochondrial DNA
    • Kivisild T, Villems R. 2000. Questioning evidence for recombination in human mitochondrial DNA. Science. 288:1931a.
    • (2000) Science , vol.288
    • Kivisild, T.1    Villems, R.2
  • 18
    • 33645108873 scopus 로고    scopus 로고
    • LAMARC 2.0: Maximum likelihood and Bayesian estimation of population parameters
    • Kuhner MK. 2006. LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters. Bioinformatics. 22(6):768-770.
    • (2006) Bioinformatics , vol.22 , Issue.6 , pp. 768-770
    • Kuhner, M.K.1
  • 19
    • 0034674138 scopus 로고    scopus 로고
    • Questioning evidence for recombination in human mitochondrial DNA
    • Kumar S, Hedrick P, Dowling T. 2000. Questioning evidence for recombination in human mitochondrial DNA. Science. 288:1931a.
    • (2000) Science , vol.288
    • Kumar, S.1    Hedrick, P.2    Dowling, T.3
  • 20
    • 0002907949 scopus 로고
    • Interaction of selection + linkage. I. General considerations - heterotic models
    • Lewontin RC. 1964. Interaction of selection + linkage. I. General considerations - heterotic models. Genetics. 49(1):49-67.
    • (1964) Genetics , vol.49 , Issue.1 , pp. 49-67
    • Lewontin, R.C.1
  • 21
    • 0036199914 scopus 로고    scopus 로고
    • A coalescent-based method for detecting and estimating recombination from gene sequences
    • McVean G, Awadalla P, Fearnhead P. 2002. A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics. 160(3):1231-1241.
    • (2002) Genetics , vol.160 , Issue.3 , pp. 1231-1241
    • McVean, G.1    Awadalla, P.2    Fearnhead, P.3
  • 22
    • 0037422550 scopus 로고    scopus 로고
    • Mishmar D, Ruiz-Pesini E, Golik P, et al. (13 co-authors). 2003. Natural selection shaped regional mtDNA variation in humans. Proc Natl Acad Sci USA. 100(1):171-176.
    • Mishmar D, Ruiz-Pesini E, Golik P, et al. (13 co-authors). 2003. Natural selection shaped regional mtDNA variation in humans. Proc Natl Acad Sci USA. 100(1):171-176.
  • 23
    • 0031153858 scopus 로고    scopus 로고
    • Site-by-site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA
    • Nielsen R. 1997. Site-by-site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA. Syst Biol. 46(2):346-353.
    • (1997) Syst Biol , vol.46 , Issue.2 , pp. 346-353
    • Nielsen, R.1
  • 24
    • 1842833437 scopus 로고    scopus 로고
    • A reanalysis of the indirect evidence for recombination in human mitochondrial DNA
    • Piganeau G, Eyre-Walker A. 2004. A reanalysis of the indirect evidence for recombination in human mitochondrial DNA. Heredity. 92(4):282-288.
    • (2004) Heredity , vol.92 , Issue.4 , pp. 282-288
    • Piganeau, G.1    Eyre-Walker, A.2
  • 25
    • 8444235408 scopus 로고    scopus 로고
    • A broad survey of recombination in animal mitochondria
    • Piganeau G, Gardner M, Eyre-Walker A. 2004. A broad survey of recombination in animal mitochondria. Mol Biol Evol. 21(12):2319-2325.
    • (2004) Mol Biol Evol , vol.21 , Issue.12 , pp. 2319-2325
    • Piganeau, G.1    Gardner, M.2    Eyre-Walker, A.3
  • 26
    • 0036097812 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Empirical data
    • Posada D. 2002. Evaluation of methods for detecting recombination from DNA sequences: empirical data. Mol Biol Evol. 19(5):708-717.
    • (2002) Mol Biol Evol , vol.19 , Issue.5 , pp. 708-717
    • Posada, D.1
  • 27
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • Posada D, Crandall KA. 2001. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci USA. 98(24):13757-13762.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.24 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 28
    • 0036183042 scopus 로고    scopus 로고
    • The effect of recombination on the accuracy of phylogeny estimation
    • Posada D, Crandall KA. 2002. The effect of recombination on the accuracy of phylogeny estimation. J Mol Evol. 54(3):396-402.
    • (2002) J Mol Evol , vol.54 , Issue.3 , pp. 396-402
    • Posada, D.1    Crandall, K.A.2
  • 29
    • 0033793521 scopus 로고    scopus 로고
    • Consequences of recombination on traditional phylogenetic analysis
    • Schierup MH, Hein J. 2000a. Consequences of recombination on traditional phylogenetic analysis. Genetics. 156(2):879-891.
    • (2000) Genetics , vol.156 , Issue.2 , pp. 879-891
    • Schierup, M.H.1    Hein, J.2
  • 30
    • 0033805038 scopus 로고    scopus 로고
    • Recombination and the molecular clock
    • Schierup MH, Hein J. 2000b. Recombination and the molecular clock. Mol Biol Evol. 17(10):1578-1579.
    • (2000) Mol Biol Evol , vol.17 , Issue.10 , pp. 1578-1579
    • Schierup, M.H.1    Hein, J.2
  • 31
    • 5644299330 scopus 로고    scopus 로고
    • Eve 'n' Steven: Recombination of human mitochondrial DNA
    • Slate J, Gemmell NJ. 2004. Eve 'n' Steven: recombination of human mitochondrial DNA. Trends Ecol Evol. 19(11):561-563.
    • (2004) Trends Ecol Evol , vol.19 , Issue.11 , pp. 561-563
    • Slate, J.1    Gemmell, N.J.2
  • 32
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Smith JM. 1992. Analyzing the mosaic structure of genes. J Mol Evol. 34(2):126-129.
    • (1992) J Mol Evol , vol.34 , Issue.2 , pp. 126-129
    • Smith, J.M.1
  • 33
    • 0031897789 scopus 로고    scopus 로고
    • Detecting recombination from gene trees
    • Smith JM, Smith NH. 1998. Detecting recombination from gene trees. Mol Biol Evol. 15(5):590-599.
    • (1998) Mol Biol Evol , vol.15 , Issue.5 , pp. 590-599
    • Smith, J.M.1    Smith, N.H.2
  • 35
    • 56549131066 scopus 로고    scopus 로고
    • Revealing the hidden complexities of mtDNA inheritance
    • White DJ, Wolff JN, Pierson M, Gemmell NJ. 2008. Revealing the hidden complexities of mtDNA inheritance. Mol Ecol. 17(23):4925-4942.
    • (2008) Mol Ecol , vol.17 , Issue.23 , pp. 4925-4942
    • White, D.J.1    Wolff, J.N.2    Pierson, M.3    Gemmell, N.J.4
  • 36
    • 0034754464 scopus 로고    scopus 로고
    • Recombination in human mitochondrial DNA?
    • Wiuf C. 2001. Recombination in human mitochondrial DNA? Genetics. 159(2):749-756.
    • (2001) Genetics , vol.159 , Issue.2 , pp. 749-756
    • Wiuf, C.1
  • 37
    • 0034815265 scopus 로고    scopus 로고
    • A simulation study of the reliability of recombination detection methods
    • Wiuf C, Christensen T, Hein J. 2001. A simulation study of the reliability of recombination detection methods. Mol Biol Evol. 18(10):1929-1939.
    • (2001) Mol Biol Evol , vol.18 , Issue.10 , pp. 1929-1939
    • Wiuf, C.1    Christensen, T.2    Hein, J.3
  • 38
    • 0028813337 scopus 로고
    • A space-time process model for the evolution of DNA-sequences
    • Yang ZH. 1995. A space-time process model for the evolution of DNA-sequences. Genetics. 139(2):993-1005.
    • (1995) Genetics , vol.139 , Issue.2 , pp. 993-1005
    • Yang, Z.H.1
  • 39
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analyses
    • Yang ZH. 1996. Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol Evol. 11(9):367-372.
    • (1996) Trends Ecol Evol , vol.11 , Issue.9 , pp. 367-372
    • Yang, Z.H.1
  • 40
    • 33846590434 scopus 로고    scopus 로고
    • Inheritance of mitochondrial DNA recombinants in double-heteroplasmic families: Potential implications for phylogenetic analysis
    • Zsurka G, Hampel KG, Kudina T, Kornblum C, Kraytsberg Y, Elger CE, Khrapko K, Kunz WS. 2007. Inheritance of mitochondrial DNA recombinants in double-heteroplasmic families: potential implications for phylogenetic analysis. Am J Hum Genet. 80(2):298-305.
    • (2007) Am J Hum Genet , vol.80 , Issue.2 , pp. 298-305
    • Zsurka, G.1    Hampel, K.G.2    Kudina, T.3    Kornblum, C.4    Kraytsberg, Y.5    Elger, C.E.6    Khrapko, K.7    Kunz, W.S.8
  • 41
    • 23044500257 scopus 로고    scopus 로고
    • Recombination of mitochondrial DNA in skeletal muscle of individuals with multiple mitochondrial DNA heteroplasmy
    • Zsurka G, Kraytsberg Y, Kudina T, Kornblum C, Elger CE, Khrapko K, Kunz WS. 2005. Recombination of mitochondrial DNA in skeletal muscle of individuals with multiple mitochondrial DNA heteroplasmy. Nat Genet. 37(8):873-877.
    • (2005) Nat Genet , vol.37 , Issue.8 , pp. 873-877
    • Zsurka, G.1    Kraytsberg, Y.2    Kudina, T.3    Kornblum, C.4    Elger, C.E.5    Khrapko, K.6    Kunz, W.S.7


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