Testcross performance of rye introgression lines developed by marker-assisted backcrossing using an Iranian accession as donor

Theoretical and Applied Genetics

Volumn 118, Issue 7, 2009, Pages 1225-1238

  Falke, K C ^a   Susic Z ^a,d   Wilde, P ^b   Wortmann, H ^c   Mohring J ^a   Piepho, H P ^a   Geiger, H H ^a   Miedaner, T ^a  

^a UNIVERSITY OF HOHENHEIM   (Germany)

^b KWS LOCHOW GmbH   (Germany)

^c Hybro GmbH and Co KG   (Germany)

^d De Ruiter Seeds   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BREEDING MATERIALS; CHROMOSOME SEGMENTS; FIELD TRIALS; GENETIC BACKGROUNDS; GENETIC DIVERSITIES; GENOMIC REGIONS; HEADING DATES; INBRED LINES; INTROGRESSION LINES; MOLECULAR LEVELS; QUANTITATIVE TRAIT LOCUS; SECALE CEREALE;

DISTRIBUTED PARAMETER NETWORKS; LIBRARIES; PLANTS (BOTANY);

QUALITY CONTROL;

ARTICLE; BREEDING; CROP; CROSS BREEDING; GENE LIBRARY; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; INBREEDING; IRAN; QUANTITATIVE TRAIT LOCUS; RYE;

BREEDING; CROPS, AGRICULTURAL; CROSSES, GENETIC; GENE LIBRARY; GENETIC MARKERS; GENETIC VARIATION; INBREEDING; IRAN; QUANTITATIVE TRAIT LOCI; SECALE CEREALE;

SECALE CEREALE;

EID: 67349256392     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-009-0976-7     Document Type: Article

References (61)

1. D Bernacchi T Beck-Bunn D Emmatty Y Eshed S Inai J Lopez V Petiard H Sayama J Uhlig D Zamir S Tanksley 1998 Advanced backcross QTL analysis of tomato. II. Evaluation of near-isogenic lines carrying single-donor introgressions for desirable wild QTL-alleles derived from Lycopersicon hirsutum and L. pimpinellifolium Theor Appl Genet 97 170 180 (Pubitemid 28371680)
2. D Bernacchi T Beck-Bunn Y Eshed J Lopez V Petiard J Uhlig D Zamir S Tanksley 1998 Advanced backcross QTL analysis in tomato. I. Identification of QTLs for traits of agronomic importance from Lycopersicon hirsutum Theor Appl Genet 97 381 397 (Pubitemid 28428507)
3. A Börner V Korzun AV Voylokov WE Weber 1999 Detection of quantitative trait loci on chromosome 5R of rye (Secale cereale L.) Theor Appl Genet 98 1087 1090 (Pubitemid 29245237)
4. A Börner V Korzun AV Voylokov AJ Worland WE Weber 2000 Genetic mapping of quantitative trait loci in rye (Secale cereale L.) Euphytica 116 203 209
5. MG Bulmer 1971 The effect of selection on genetic variability Am Natl 105 201 211
6. Cochran W, Cox GM (1957) Experimental designs, 2nd edn. Wiley, NY
7. VC Concibido B La Vallee P Mclaird N Pineda J Meyer L Hummel J Yang K Wu X Delannay 2003 Introgression of a quantitative trait locus for yield from Glycine soja into commercial soybean cultivars Theor Appl Genet 106 575 582 (Pubitemid 36599825)
8. C Dunnett 1955 A multiple comparison procedure for comparing several treatments with a control J Am Stat Assoc 50 1096 1121
9. K Emrich F Wilde T Miedaner H-P Piepho 2008 REML approach for adjusting the Fusarium head blight rating to a phenological date in inoculated selection experiments of wheat Theor Appl Genet 117 65 73
10. Y Eshed D Zamir 1994 A genomic library of Lycopersicon pennellii in L. esculentum: a tool for fine mapping of genes Euphytica 79 175 179
11. Y Eshed D Zamir 1995 An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield- associated QTL Genetics 141 1147 1162
12. 2 flint maize populations under modified recurrent full-sib selection Theor Appl Genet 114 765 776 (Pubitemid 46339684)
13. KC Falke Z Susic B Hackauf V Korzun J Schondelmaier P Wilde P Wehling H Wortmann J Mank J Rouppe van der Voort H Maurer T Miedaner HH Geiger 2008 Establishment of introgression libraries in hybrid rye (Secale cereale L.) from an Iranian primitive rye accession as a new tool for rye breeding and genomics Theor Appl Genet 117 641 652
14. R Finkers AW Van Heusden F Meijer-Dekens JAL Van Kan P Maris P Lindhout 2007 The construction of a Solanum habrochaites LYC4 introgression line population and the identification of QTLs for resistance to Botrytis cinerea Theor Appl Genet 114 1071 1080 (Pubitemid 46525482)
15. TM Fulton S Grandillo T Beck-Bunn E Fridman A Frampton J Lopez V Petiard J Uhlig D Zamir SD Tanksley 2000 Advanced backcross QTL analysis of a Lycopersicon esculentum × Lycopersicon parviflorum cross Theor Appl Genet 100 1025 1042 (Pubitemid 30334046)
16. Geiger HH, Miedaner T (1999) Hybrid rye and heterosis. In: Coors JG, Pandey S (eds) Genetics and exploitation of heterosis in crops. Crop Sci. Soc., America, pp 439-450
17. A Gur D Zamir 2004 Unused natural variation can lift yield barriers in plant breeding PLoS Biol 2 1610 1615 (Pubitemid 39532922)
18. BIG Haussmann HK Parzies T Presterl Z Susic T Miedaner 2004 Plant genetic resources in crop improvement Plant Genet Res 2 3 21 (Pubitemid 39048189)
19. J Holland W Nyquist C Cervantes-Martinez 2003 Estimating and interpreting heritability for plant breeding: an update Plant Breed Rev 22 9 112
20. JC Hsu 1992 The factor analytic approach to simultaneous inference in the general linear model J Graph Comput Stat 1 151 168
21. XQ Huang H Cöster MW Ganal MS Röder 2003 Advanced backcross QTL analysis for the identification of quantitative trait loci alleles from wild relatives of wheat (Triticum aestivum L.) Theor Appl Genet 106 1379 1389 (Pubitemid 36689292)
22. Jeuken M, Pelgrom K, Stam P, Lindhout P (2008) Efficient QTL detection for nonhost resistance in wild lettuce: backcross inbred lines versus F2 population. Theor Appl Genet 10.1007/s00122-008-0718-2
23. DD Kosambi 1944 The estimation of map distance from recombination values Ann Eugen 12 172 175
24. A Kunert AA Naz O Dedeck K Pillen J Leon 2007 AB-QTL analysis in winter wheat: I. Synthetic hexaploid wheat (T. turgidum ssp. dicoccoides + T. tauschii) as a source of favourable alleles for milling and baking quality traits Theor Appl Genet 115 683 695 (Pubitemid 47313049)
25. G Ladizinsky 1985 Founder effect in crop-plant evolution Econ Bot 39 191 199
26. R Lande R Thompson 1990 Efficiency of marker-assisted selection in the improvement of quantitative traits Genetics 124 743 756 (Pubitemid 20106345)
27. SY Lin T Sasaki M Yano 1998 Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L., using backcross inbred lines Theor Appl Genet 96 997 1003 (Pubitemid 28329556)
28. S Liu R Zhou Y Dong P Li J Jia 2006 Development, utilization of introgression lines using a synthetic wheat as donor Theor Appl Genet 112 1360 1373
29. T Lübberstedt AE Melchinger S Fähr D Klein A Dally P Westhoff 1998 QTL mapping in testcrosses of flint lines of maize: III. Comparison across populations for forage traits Crop Sci 38 1278 1289 (Pubitemid 28404050)
30. P Masojc P Milczarski 2005 Mapping QTLs for α-amylase activity in rye grain J Appl Genet 46 115 123 (Pubitemid 40840266)
31. P Masojc A Banek-Tabor P Milczarski M Twardowska 2007 QTLs for resistance to preharvest sprouting in rye (Secale cereale L.) J Appl Genet 48 211 217 (Pubitemid 47330962)
32. I Matus A Corey T Filichkin PM Hayes MI Vales J Kling O Riera-Lizarazu K Sato W Powell R Waugh 2003 Development and characterization of recombinant chromosome substitution lines (RCSLs) using Hordeum vulgare subsp. spontaneum as a source of donor alleles in a Hordeum vulgare subsp. vulgare background Genome 46 1010 1023 (Pubitemid 38122442)
33. HP Maurer AE Melchinger M Frisch 2008 Population genetic simulation and data analysis with Plabsoft Euphytica 161 133 139
34. AE Melchinger HF Utz CC Schön 1998 Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects Genetics 149 383 403 (Pubitemid 28246812)
35. HD Patterson ER Williams 1976 A new class of resolvable incomplete block designs Biometrica 63 83 92
36. H-P Piepho 1999 Stability analysis using the SAS system Agron J 91 154 160 (Pubitemid 29212198)
37. H-P Piepho J Möhring 2007 Computing heritability and selection response from unbalanced plant breeding trials Genetics 177 1881 1888 (Pubitemid 350277079)
38. H-P Piepho ER Williams M Fleck 2006 A note on the analysis of designed experiments with complex treatment structure Hort Sci 41 446 452
39. K Pillen A Zacharias J Leon 2003 Advanced backcross QTL analysis in barley (Hordeum vulgare L.) Theor Appl Genet 107 340 352 (Pubitemid 36922313)
40. R Development Core Team (2004) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna
41. J-M Ribaut M Ragot 2007 Marker-assisted selection to improve drought adaptation in maize: the backcross approach, perspectives, limitations, and alternatives J Exp Bot 58 351 360 (Pubitemid 46204221)
42. SAS Institute (2004) Version 8.2. SAS Institute, Cary
43. I Schmalenbach N Körber K Pillen 2008 Selecting a set of wild barley introgression lines and verification of QTL effects for resistance to powdery mildew and leaf rust Theor Appl Genet 117 1093 1106
44. Schmalenbach I, Léon J, Pillen K (2008b) Identification and verification of QTLs for agronomic traits using wild barley introgression lines. Theor Appl Genet. doi: 10.1007/s00122-008-0915-z
45. CC Schön FH Utz S Groh B Truberg S Openshaw AE Melchinger 2004 Quantitative trait locus mapping based on resampling in a vast maize testcross experiment and its relevance to quantitative genetics for complex traits Genetics 167 485 498 (Pubitemid 38736404)
46. EM Septiningsih J Prasetiyono E Lubis TH Tai T Tjubaryat S Moeljopawiro SR McCouch 2003 Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon Theor Appl Genet 107 1419 1432 (Pubitemid 37496546)
47. J Siangliw B Jongdee G Pantuwan T Toojinda 2007 Developing KDML105 backcross introgression lines using marker-assisted selection for QTLs associated with drought tolerance in rice Sci Asia 33 207 214
48. SJ Szalma BM Hostert JR LeDeaux CW Stuber JB Holland 2007 QTL mapping with near-isogenic lines in maize Theor Appl Genet 114 1211 1228 (Pubitemid 46697831)
49. L Tan F Liu W Xue G Wang S Ye Z Zhu Y Fu X Wang C Sun 2007 Development of Oryza rufipogon and O. sativa introgression lines and assessment for yield-related quantitative trait loci J Int Plant Biol 49 871 884 (Pubitemid 46993137)
50. SD Tanksley S McCouch 1997 Seed banks and molecular maps: unlocking genetic potential from the wild Science 277 1063 1066 (Pubitemid 27371620)
51. SD Tanksley JC Nelson 1996 Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines Theor Appl Genet 92 191 203 (Pubitemid 26263395)
52. SD Tanksley S Grandillo TM Fulton D Zamir Y Eshed V Petiard J Lopez T Beck-Bunn 1996 Advanced backcross QTL analysis in a cross between an elite processing line of tomato and its wild relative L. pimpinellifolium Theor Appl Genet 92 213 224 (Pubitemid 26263397)
53. F Tian JL De Q Fu FZ Zuo CF Yong KW Xiang QS Chuan 2006 Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits Theor Appl Genet 112 570 580 (Pubitemid 43084744)
54. A-M Tomerius T Miedaner HH Geiger 2008 A model calculation approach towards the optimization of a standard scheme of seed-parent line development in hybrid rye breeding Plant Breed 127 433 440
55. Utz HF (2001) PLABSTAT: a computer program for the statistical analysis of plant breeding experiments. Institute for plant breeding, seed science and population genetics. University of Hohenheim, Stuttgart
56. van Ooijen JW, Voorrips RE (2001) JoinMap Version 3.0 software for the calculation of genetic linkage maps. Plant Research International, Wageningen
57. M von Korff H Wang J Leon K Pillen 2004 Development of candidate introgression lines using an exotic barley accession (Hordeum vulgare ssp. spontaneum) as donor Theor Appl Genet 109 1736 1745 (Pubitemid 40024940)
58. M von Korff H Wang J Leon K Pillen 2005 AB-QTL analysis in spring barley. I. Detection of resistance genes against powdery mildew, leaf rust and scald introgressed from wild barley Theor Appl Genet 111 583 590 (Pubitemid 41204241)
59. M von Korff H Wang J Leon K Pillen 2006 AB-QTL analysis in spring barley: II. Detection of favourable exotic alleles for agronomic traits introgressed from wild barley (H. vulgare ssp. spontaneum) Theor Appl Genet 112 1221 1231
60. Whitt SR, Wilson LM, Tenaillon MI, Gaut BS, Buckler IV ES (2002) Genetic diversity and selection in the maize starch pathway. PNAS 99:12959-12962
61. D Zamir 2001 Improving plant breeding with exotic genetic libraries Nat Rev Genet 2 983 989 (Pubitemid 33691095)