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Volumn 42, Issue 10-11, 2009, Pages 1113-1122

Rapid and quantitative detection of CpG-methylation status using TaqMan PCR combined with methyl-binding-domain polypeptide

Author keywords

Methyl binding domain polypeptide; Methylation; TaqMan PCR

Indexed keywords

APC PROTEIN; METHYL BINDING DOMAIN POLYPEPTIDE; POLYPEPTIDE; RAS ASSOCIATION DOMAIN FAMILY PROTEIN 1A; TUMOR MARKER; UNCLASSIFIED DRUG;

EID: 67349243496     PISSN: 00099120     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.clinbiochem.2009.03.017     Document Type: Article
Times cited : (7)

References (32)
  • 1
    • 0032960181 scopus 로고    scopus 로고
    • Cancer epigenetics comes of age
    • Jones P.A., and Laird P.W. Cancer epigenetics comes of age. Nat. Genet. 21 (1999) 163-167
    • (1999) Nat. Genet. , vol.21 , pp. 163-167
    • Jones, P.A.1    Laird, P.W.2
  • 2
    • 0036274359 scopus 로고    scopus 로고
    • The fundamental role of epigenetic events in cancer
    • Jones P.A., and Baylin S.B. The fundamental role of epigenetic events in cancer. Nat. Rev., Genet. 3 (2002) 415-428
    • (2002) Nat. Rev., Genet. , vol.3 , pp. 415-428
    • Jones, P.A.1    Baylin, S.B.2
  • 3
    • 0345357773 scopus 로고    scopus 로고
    • Gene silencing in cancer in association with promoter hypermethylation
    • Herman J.G., and Baylin S.B. Gene silencing in cancer in association with promoter hypermethylation. N. Engl. J. Med. 349 (2003) 2042-2054
    • (2003) N. Engl. J. Med. , vol.349 , pp. 2042-2054
    • Herman, J.G.1    Baylin, S.B.2
  • 4
    • 39749180354 scopus 로고    scopus 로고
    • DNA methylation biomarkers for blood-based colorectal cancer screening
    • Lofton-Day C., Model F., Devos T., et al. DNA methylation biomarkers for blood-based colorectal cancer screening. Clin. Chem. 54 (2008) 414-423
    • (2008) Clin. Chem. , vol.54 , pp. 414-423
    • Lofton-Day, C.1    Model, F.2    Devos, T.3
  • 5
    • 40849124009 scopus 로고    scopus 로고
    • DNA methylation markers and early recurrence in stage I lung cancer
    • Brock M.V., Hooker C.M., Ota-Machida E., et al. DNA methylation markers and early recurrence in stage I lung cancer. N. Engl. J. Med. 358 (2008) 1118-1128
    • (2008) N. Engl. J. Med. , vol.358 , pp. 1118-1128
    • Brock, M.V.1    Hooker, C.M.2    Ota-Machida, E.3
  • 6
    • 35648947815 scopus 로고    scopus 로고
    • Hypermethylation of multiple genes as clonal markers in multicentric hepatocellular carcinoma
    • Nomoto S., Kinoshita T., Kato K., et al. Hypermethylation of multiple genes as clonal markers in multicentric hepatocellular carcinoma. Br. J. Cancer 97 (2007) 1260-1265
    • (2007) Br. J. Cancer , vol.97 , pp. 1260-1265
    • Nomoto, S.1    Kinoshita, T.2    Kato, K.3
  • 7
    • 0019332015 scopus 로고
    • Comparison of bisulfite modification of 5-methyldeoxycytidine and deoxycytidine residues
    • Wang R.Y., Gehrke C.W., and Ehrlich M. Comparison of bisulfite modification of 5-methyldeoxycytidine and deoxycytidine residues. Nucleic Acids Res. 8 (1980) 4777-4790
    • (1980) Nucleic Acids Res. , vol.8 , pp. 4777-4790
    • Wang, R.Y.1    Gehrke, C.W.2    Ehrlich, M.3
  • 9
    • 0034654669 scopus 로고    scopus 로고
    • MethyLight: a high-throughput assay to measure DNA methylation
    • Eads C.A., Danenberg K.D., Kawakami K., et al. MethyLight: a high-throughput assay to measure DNA methylation. Nucleic Acids Res. 28 (2000) e32
    • (2000) Nucleic Acids Res. , vol.28
    • Eads, C.A.1    Danenberg, K.D.2    Kawakami, K.3
  • 10
    • 17444437545 scopus 로고    scopus 로고
    • A real-time PCR assay for DNA-methylation using methylation-specific blockers
    • Cottrell S.E., Distler J., Goodman N.S., et al. A real-time PCR assay for DNA-methylation using methylation-specific blockers. Nucleic Acids Res. 32 (2004) e10
    • (2004) Nucleic Acids Res. , vol.32
    • Cottrell, S.E.1    Distler, J.2    Goodman, N.S.3
  • 11
    • 16544382188 scopus 로고    scopus 로고
    • MethylQuant: a sensitive method for quantifying methylation of specific cytosines within the genome
    • Thomassin H., Kress C., and Grange T. MethylQuant: a sensitive method for quantifying methylation of specific cytosines within the genome. Nucleic Acids Res. 32 (2004) e168
    • (2004) Nucleic Acids Res. , vol.32
    • Thomassin, H.1    Kress, C.2    Grange, T.3
  • 12
    • 0037970043 scopus 로고    scopus 로고
    • Methylation target array for rapid analysis of CpG island hypermethylation in multiple tissue genomes
    • Chen C.M., Chen H.L., Hsiau T.H., et al. Methylation target array for rapid analysis of CpG island hypermethylation in multiple tissue genomes. Am. J. Pathol. 163 (2003) 37-45
    • (2003) Am. J. Pathol. , vol.163 , pp. 37-45
    • Chen, C.M.1    Chen, H.L.2    Hsiau, T.H.3
  • 13
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • Weber M., Davies J.J., Wittig D., et al. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet. 37 (2005) 853-862
    • (2005) Nat. Genet. , vol.37 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3
  • 14
    • 33748055105 scopus 로고    scopus 로고
    • MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells
    • Rauch T., Li H., Wu X., and Pfeifer G.P. MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells. Cancer Res. 66 (2006) 7939-7947
    • (2006) Cancer Res. , vol.66 , pp. 7939-7947
    • Rauch, T.1    Li, H.2    Wu, X.3    Pfeifer, G.P.4
  • 15
    • 27744443057 scopus 로고    scopus 로고
    • Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer
    • Rauch T., and Pfeifer G.P. Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer. Lab. Invest. 85 (2005) 1172-1180
    • (2005) Lab. Invest. , vol.85 , pp. 1172-1180
    • Rauch, T.1    Pfeifer, G.P.2
  • 17
    • 33644853936 scopus 로고    scopus 로고
    • Combination of methylated-DNA precipitation and methylation-sensitive restriction enzymes (COMPARE-MS) for the rapid, sensitive and quantitative detection of DNA methylation
    • Yegnasubramanian S., Lin X., Haffner M.C., DeMarzo A.M., and Nelson W.G. Combination of methylated-DNA precipitation and methylation-sensitive restriction enzymes (COMPARE-MS) for the rapid, sensitive and quantitative detection of DNA methylation. Nucleic Acids Res. 34 (2006) e19
    • (2006) Nucleic Acids Res. , vol.34
    • Yegnasubramanian, S.1    Lin, X.2    Haffner, M.C.3    DeMarzo, A.M.4    Nelson, W.G.5
  • 19
    • 24044523177 scopus 로고    scopus 로고
    • DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG
    • Klose R.J., Sarraf S.A., Schmiedeberg L., McDermott S.M., Stancheva I., and Bird A.P. DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG. Mol. Cell 19 (2005) 667-678
    • (2005) Mol. Cell , vol.19 , pp. 667-678
    • Klose, R.J.1    Sarraf, S.A.2    Schmiedeberg, L.3    McDermott, S.M.4    Stancheva, I.5    Bird, A.P.6
  • 20
    • 0038002236 scopus 로고    scopus 로고
    • Analysis and quantification of multiple methylation variable positions in CpG islands by pyrosequencing
    • Tost J., Dunker J., and Gut I.G. Analysis and quantification of multiple methylation variable positions in CpG islands by pyrosequencing. Biotechniques 35 (2003) 152-156
    • (2003) Biotechniques , vol.35 , pp. 152-156
    • Tost, J.1    Dunker, J.2    Gut, I.G.3
  • 21
    • 0035832367 scopus 로고    scopus 로고
    • Extent of CpG methylation is not proportional to the in vivo spontaneous mutation frequency at transgenic loci in Big BlueTM rodents
    • Monroe J.J., Manjanatha M.G., and Skopek T.R. Extent of CpG methylation is not proportional to the in vivo spontaneous mutation frequency at transgenic loci in Big BlueTM rodents. Mutat. Res. 476 (2001) 1-11
    • (2001) Mutat. Res. , vol.476 , pp. 1-11
    • Monroe, J.J.1    Manjanatha, M.G.2    Skopek, T.R.3
  • 22
    • 0348202422 scopus 로고    scopus 로고
    • Analysis and accurate quantification of CpG methylation by MALDI mass spectrometry
    • Tost J., Schatz P., Schuster M., Berlin K., and Gut I.G. Analysis and accurate quantification of CpG methylation by MALDI mass spectrometry. Nucleic Acids Res. 31 (2003) e50
    • (2003) Nucleic Acids Res. , vol.31
    • Tost, J.1    Schatz, P.2    Schuster, M.3    Berlin, K.4    Gut, I.G.5
  • 23
    • 58149180833 scopus 로고    scopus 로고
    • Identification of novel aberrant methylation of BASP1 and SRD5A2 for early diagnosis of hepatocellular carcinoma by genome-wide search
    • Moribe T., Iizuka N., Miura T., et al. Identification of novel aberrant methylation of BASP1 and SRD5A2 for early diagnosis of hepatocellular carcinoma by genome-wide search. Int. J. Oncol. 33 (2008) 949-958
    • (2008) Int. J. Oncol. , vol.33 , pp. 949-958
    • Moribe, T.1    Iizuka, N.2    Miura, T.3
  • 24
    • 7044229551 scopus 로고    scopus 로고
    • Rapid detection of varicella-zoster virus infection by a loop-mediated isothermal amplification method
    • Okamoto S., Yoshikawa T., Ihira M., et al. Rapid detection of varicella-zoster virus infection by a loop-mediated isothermal amplification method. J. Med. Virol. 74 (2004) 677-682
    • (2004) J. Med. Virol. , vol.74 , pp. 677-682
    • Okamoto, S.1    Yoshikawa, T.2    Ihira, M.3
  • 25
    • 0032809392 scopus 로고    scopus 로고
    • A PCR based DNA hybridisation capture system for the detection of human cytomegalovirus. A comparative study with other identification methods
    • Mansy F., Brancart F., Liesnard C., Bollen A., and Godfroid E. A PCR based DNA hybridisation capture system for the detection of human cytomegalovirus. A comparative study with other identification methods. J. Virol. Methods 80 (1999) 113-122
    • (1999) J. Virol. Methods , vol.80 , pp. 113-122
    • Mansy, F.1    Brancart, F.2    Liesnard, C.3    Bollen, A.4    Godfroid, E.5
  • 26
    • 0031963865 scopus 로고    scopus 로고
    • Detection of human herpesvirus 6 DNA in serum by a microplate PCR-hybridization assay
    • Osiowy C., Prud'homme I., Monette M., and Zou S. Detection of human herpesvirus 6 DNA in serum by a microplate PCR-hybridization assay. J. Clin. Microbiol. 36 (1998) 68-72
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 68-72
    • Osiowy, C.1    Prud'homme, I.2    Monette, M.3    Zou, S.4
  • 27
    • 0041924707 scopus 로고    scopus 로고
    • Aberrant promoter methylation profiles of tumor suppressor genes in hepatocellular carcinoma
    • Yang B., Guo M., Herman J.G., and Clark D.P. Aberrant promoter methylation profiles of tumor suppressor genes in hepatocellular carcinoma. Am. J. Pathol. 163 (2003) 1101-1107
    • (2003) Am. J. Pathol. , vol.163 , pp. 1101-1107
    • Yang, B.1    Guo, M.2    Herman, J.G.3    Clark, D.P.4
  • 28
    • 41049096579 scopus 로고    scopus 로고
    • APC promoter methylation and protein expression in hepatocellular carcinoma
    • Csepregi A., Röcken C., Hoffmann J., et al. APC promoter methylation and protein expression in hepatocellular carcinoma. J. Cancer Res. Clin. Oncol. 134 (2008) 579-589
    • (2008) J. Cancer Res. Clin. Oncol. , vol.134 , pp. 579-589
    • Csepregi, A.1    Röcken, C.2    Hoffmann, J.3
  • 29
    • 0037468934 scopus 로고    scopus 로고
    • Frequent epigenetic inactivation of the RASSF1A gene in hepatocellular carcinoma
    • Schagdarsurengin U., Wilkens L., Steinemann D., et al. Frequent epigenetic inactivation of the RASSF1A gene in hepatocellular carcinoma. Oncogene 22 (2003) 1866-1871
    • (2003) Oncogene , vol.22 , pp. 1866-1871
    • Schagdarsurengin, U.1    Wilkens, L.2    Steinemann, D.3
  • 30
    • 0036789450 scopus 로고    scopus 로고
    • High frequency of promoter hypermethylation of RASSF1A and p16 and its relationship to aflatoxin B1-DNA adduct levels in human hepatocellular carcinoma
    • Zhang Y.J., Ahsan H., Chen Y., et al. High frequency of promoter hypermethylation of RASSF1A and p16 and its relationship to aflatoxin B1-DNA adduct levels in human hepatocellular carcinoma. Mol. Carcinog. 35 (2002) 85-92
    • (2002) Mol. Carcinog. , vol.35 , pp. 85-92
    • Zhang, Y.J.1    Ahsan, H.2    Chen, Y.3
  • 31
    • 34247895661 scopus 로고    scopus 로고
    • Predicting hepatocellular carcinoma by detection of aberrant promoter methylation in serum DNA
    • Zhang Y.J., Wu H.C., Shen J., et al. Predicting hepatocellular carcinoma by detection of aberrant promoter methylation in serum DNA. Clin. Cancer Res. 13 (2007) 2378-2384
    • (2007) Clin. Cancer Res. , vol.13 , pp. 2378-2384
    • Zhang, Y.J.1    Wu, H.C.2    Shen, J.3
  • 32
    • 26444610313 scopus 로고    scopus 로고
    • Methylation profiles of genes utilizing newly developed CpG island methylation microarray on colorectal cancer patients
    • Kimura N., Nagasaka T., Murakami J., et al. Methylation profiles of genes utilizing newly developed CpG island methylation microarray on colorectal cancer patients. Nucleic Acids Res. 33 (2005) e46
    • (2005) Nucleic Acids Res. , vol.33
    • Kimura, N.1    Nagasaka, T.2    Murakami, J.3


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