Phylogenetic analysis of Fosterella L.B. Sm. (Pitcairnioideae, Bromeliaceae) based on four chloroplast DNA regions

Molecular Phylogenetics and Evolution

Volumn 51, Issue 3, 2009, Pages 472-485

  Rex, Martina ^a   Schulte, Katharina ^b   Zizka, Georg ^b   Peters, Jule ^a   Vásquez, Roberto ^c   Ibisch, Pierre L ^d,e   Weising, Kurt ^a  

^a Institute of Biology   (Germany)

^b SENCKENBERG RESEARCH INSTITUTE   (Germany)

^c Sociedad Boliviana de Botánica ^*  (Bolivia)

^d UNIVERSITY OF APPLIED SCIENCES   (Germany)

^e Fundacion Amigos de la Naturaleza FAN   (Bolivia)

Author keywords

Biogeography; Bromeliaceae; Character evolution; Fosterella; Multilocus chloroplast DNA phylogeny; Pitcairnioideae s.str.

Indexed keywords

CHLOROPLAST DNA; PLANT DNA;

ARTICLE; BROMELIACEAE; CLASSIFICATION; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; PLANT GENE; SEQUENCE ALIGNMENT;

BROMELIACEAE; DNA, CHLOROPLAST; DNA, PLANT; EVOLUTION, MOLECULAR; GENES, PLANT; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

BROMELIACEAE; DEUTEROCOHNIA; DYCKIA; ENCHOLIRIUM; FOSTERELLA;

EID: 67349214043     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.01.001     Document Type: Article

References (51)

1. Akaike H. A new look at the statistical identification model. IEEE Trans. Automat. Control. 19 (1974) 716-723
2. Barfuss M.H.J., Samuel R., Till W., and Stuessy T.F. Phylogenetic relationships in subfamily Tillandsioideae (Bromeliaceae) based on DNA sequence data from seven plastid regions. Am. J. Bot. 92 (2005) 337-351
3. Crayn D.M., Terry R.G., Smith J.A.C., and Winter K. Molecular systematic investigations in Pitcairnioideae (Bromeliaceae) as a basis for understanding the evolution of Crassulacean Acid Metabolism (CAM). In: Wilson K.L., and Morrison D.A. (Eds). Monocots: Systematics and Evolution (2000), CSIRO, Melbourne 569-579
4. Crayn D.M., Winter K., and Smith J.A.C. Multiple origins of crassulacean acid metabolism and the epiphytic habit in the Neotropical family Bromeliaceae. Proc. Natl. Acad. Sci. USA 101 (2004) 3703-3708
5. De Sousa L.O.F., Wendt T., Brown G.K., Tuthill D.E., and Evans T.M. Monophyly and phylogenetic relationships in Lymania (Bromeliaceae: Bromelioideae) based on morphology and chloroplast DNA sequences. Syst. Bot. 32 (2007) 264-270
6. Duval M.-F., Buso G.S.C., Ferreira F.R., Noyer J.L., Coppens d́Eeckenbrugge G., Hamon P., and Ferreira M.E. Relationships in Ananas and other related genera using chloroplast DNA restriction site variation. Genome 46 (2003) 990-1004
7. Felsenstein J. Confidence limits on phylogenies, an approach using the bootstrap. Evolution 39 (1985) 783-791
8. Givnish T.J., Sytsma K.J., Smith J.F., Hahn W.J., Benzing D.H., and Burkhardt E.M. Molecular evolution and adaptive radiation in Brocchinia (Bromeliaceae, Pitcairnioideae) atop tepuis of the Guayana shield. In: Givnish T.J., and Sytsma K.J. (Eds). Molecular Evolution and Adaptive Radiation (1997), Cambridge University Press, UK 259-311
9. Givnish T.J., Millam K.C., Evans T.M., Hall J.C., Pires J.C., Berry P.E., and Sytsma K.J. Ancient vicariance or recent long-distance dispersal? Inferences about phylogeny and South American-African disjunctions in Rapateaceae and Bromeliaceae based on ndhF sequence data. Int. J. Plant Sci. 165 (2004) S35-S54
10. Givnish T.J., Millam K.C., Evans T.M., Pires J.C., Berry P.E., and Sytsma K.J. Phylogeny, biogeography, and ecological evolution in Bromeliaceae, insights from ndhF sequences. Aliso 23 (2007) 3-26
11. Hilu K.W., Borsch T., Müller K., Soltis D.E., Soltis P.S., Savolainen V., Chase M.W., Powell M.P., Alice L.A., Evans R., Sauguet H., Neinhuis C., Slotta T.A.B., Rohwer J.G., Campbell C.S., and Chatrou L.W. Angiosperm phylogeny based on matK sequence information. Am. J. Bot. 90 (2003) 1758-1776
12. Horres R., Zizka G., Kahl G., and Weising K. Molecular phylogenetics of Bromeliaceae, evidence from trnLUAA intron sequences of the chloroplast genome. Plant Biol. 2 (2000) 306-315
13. Horres R., Schulte K., Weising K., and Zizka G. Systematics of Bromelioideae (Bromeliaceae)-evidence from molecular and anatomical studies. Aliso 23 (2007) 27-43
14. Huelsenbeck J.P., and Ronquist F. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
15. Ibisch P.L., Gross E., Rauer G., and Rudolph D. On the diversity and biogeography of the genus Fosterella L.B. Sm. (Bromeliaceae) with the description of a new species from Eastern Bolivia. J. Bromel. Soc. 47 (1997) 211-217
16. Ibisch P.L., Vásquez R., and Gross E. More novelties of Fosterella L.B. Smith (Bromeliaceae), Pitcairnioideae from Bolivia. Rev. Soc. Boliv. Bot. 2 (1999) 117-132
17. Ibisch P.L., Vásquez R., Gross E., Krömer T., and Rex M. Novelties in Bolivian Fosterella (Bromeliaceae). Selbyana 23 (2002) 204-219
18. Ibisch, P.L., Read, R., Peters, J., 2008. Key to the species of the genus Fosterella (Bromeliaceae). Selbyana 29, 195-198.
19. Johnson L.A., and Soltis D.E. Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Ann. Mo. Bot. Gard. 82 (1995) 149-175
20. Kessler M., Ibisch P.L., and Gross E. Fosterella cotacajensis, una nueva especie de Bromeliaceae de los valles secos andinos de Bolivia. Rev. Soc. Boliv. Bot. 2 (1999) 111-116
21. Luther H.E. Miscellaneous new taxa of Bromeliaceae I. Selbyana 5 (1981) 310-311
22. Luther H.E. A showy new Fosterella from Bolivia. J. Bromel. Soc. 47 (1997) 118-119
23. Luther H.E. An Alphabetical List of Bromeliad Binomials. 10th ed. (2006), Marie Selby Botanical Gardens, Sarasota, FL
24. Maddison, D.R., Maddison, W.P., 2003. MacClade 4. Sinauer, Sunderland, MA.
25. Manen J.F., Natali A., and Ehrendorfer F. Phylogeny of Rubiaceae-Rubieae inferred from the sequence of a cpDNA intergene region. Plant Syst. Evol. 190 (1994) 195-211
26. Martin C.E. Physiological ecology of the Bromeliaceae. Bot. Rev. 60 (1994) 1-82
27. Müller K. PRAP-computation of Bremer support for large data sets. Mol. Phylogenet. Evol. 31 (2003) 780-782
28. Nixon K.C. The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15 (1999) 407-414
29. Oxelman B., Lidén M., and Berglund D. Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Syst. Evol. 206 (1997) 393-410
30. Peters, J., Vásquez, R., Osinaga, A., Leme, E., Weising, K., Ibisch, P.L., 2008a. Towards a taxonomic revision of Fosterella (Bromeliaceae). Selbyana 29, 182-194.
31. Peters, J., Weising, K., Ibisch, P.L., 2008b. Fosterella nicoliana, eine neue Art des peruanischen Amazonas-Tieflands mit einem bislang unbekannten Samentyp. Die Bromelie 2008(2), 64-69.
32. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
33. Rauh W. Bromelienstudien. I. Neue und wenig bekannte Arten aus Peru und anderen Ländern 9. Mitteilung. 4. Fosterella. Trop. Subtrop. Pflanzenwelt 31 (1979) 23-29
34. Rauh W. Bromelienstudien. 4. Fosterella L.B. Sm. Trop. Subtrop. Pflanzenwelt 60 (1987) 24-26
35. Rex M., Patzolt K., Schulte K., Zizka G., Vásquez R., Ibisch P.L., and Weising K. AFLP analysis of genetic relationships in the genus Fosterella L.B. Smith, Pitcairnioideae, Bromeliaceae. Genome 50 (2007) 90-105
36. Schulte, K., Zizka, G., 2008. Multi locus plastid phylogeny of Bromelioideae (Bromeliaceae) gives new insights into the taxomomic utility of petal appendages and pollen characters. Candollea 63, 209-225.
37. Schulte K., Horres R., and Zizka G. Molecular phylogeny of Bromelioideae and its implications on biogeography and the evolution of CAM in the family. Senckenbergiana Biol. 85 (2005) 113-125
38. Simmons M.P., and Ochoterena H. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 49 (2000) 369-381
39. Smith, L.B., Downs, R.J., 1974. 13. Fosterella. In: Flora Neotropica, Monograph No. 14, Pitcairnioideae. Hafner Press, New York, pp. 199-209.
40. Smith, L.B., Read, R.W., 1992. Flora Neotropica, Monograph No. 14 1, Suppl. No. 3. Fosterella. Bradea 6, pp. 134-140.
41. Smith L.B., and Till W. Bromeliaceae. In: Kubitzki K. (Ed). The Families and Genera of Vascular Plants vol. 4 (1998), Springer, Berlin, Heidelberg, New York 74-99
42. Swofford, D.L., 2002. PAUP*, Phylogenetic Analysis Using Parsimony, * and other methods, version 4.0b10. Sinauer, Sunderland, MA.
43. Terry R.G., Brown G.K., and Olmstead R.G. Examination of subfamilial phylogeny in Bromeliaceae using comparative sequencing of the plastid locus NDHF. Am. J. Bot. 84 (1997) 664-670
44. Tuthill D., and Brown G.K. Bromeliad endophytes and the serendipity of science. J. Bromeliad Soc. 54 (2004) 28-32
45. Varadarajan G.S., and Gilmartin A.J. Phylogenetic relationships of genera within the subfamily Pitcairnioideae (Bromeliaceae). Syst. Bot. 13 (1988) 283-293
46. Varadarajan G.S., and Gilmartin A.J. Taxonomic realignments within the subfamily Pitcairnioideae (Bromeliaceae). Syst. Bot. 13 (1988) 294-299
47. Wallander E., and Albert V.A. Phylogeny and classification of Oleaceae based on rps16 and trnL-F sequence data. Am. J. Bot. 87 (2000) 1827-1841
48. Weising K., Nybom H., Wolff K., and Kahl G. DNA Fingerprinting in Plants, Principles, Methods, and Applications. second ed. (2005), CRC Press, Taylor & Francis Group, Boca Raton, FA
49. Xu D.H., Abe J., Sakai M., Kanazawa A., and Shimamoto Y. Sequence variation of non-coding regions of chloroplast DNA of soybean and related wild species and its implications for the evolution of different chloroplast haplotypes. Theor. Appl. Genet. 101 (2000) 712-732
50. Young N.D., and Healy J. GapCoder automates the use of indel characters in phylogenetic analyses. BMC Bioinformatics 4 (2003) 1-6
51. Zizka G., Horres R., Nelson E.C., and Weising K. Revision of the genus Fascicularia Mez (Bromeliaceae). Bot. J. Linn. Soc. 129 (1999) 315-332