-
1
-
-
0025861991
-
Functional analysis of the fic gene involved in regulation of cell division
-
Komano T, Utsumi R, Kawamukai M. Functional analysis of the fic gene involved in regulation of cell division. Res Microbiol 1991; 142:269-277.
-
(1991)
Res Microbiol
, vol.142
, pp. 269-277
-
-
Komano, T.1
Utsumi, R.2
Kawamukai, M.3
-
2
-
-
33745634395
-
-
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006;22:1658-1659.
-
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006;22:1658-1659.
-
-
-
-
3
-
-
33751437820
-
A translocated bacterial protein protects vascular endothelial cells from apoptosis
-
Schmid MC, Scheidegger F, Dehio M, Balmelle-Devaux N, Schulein R, Guye P, Chennakesava CS, Biedermann B, Dehio C. A translocated bacterial protein protects vascular endothelial cells from apoptosis. PLoS Pathog 2006;2:e115.
-
(2006)
PLoS Pathog
, vol.2
-
-
Schmid, M.C.1
Scheidegger, F.2
Dehio, M.3
Balmelle-Devaux, N.4
Schulein, R.5
Guye, P.6
Chennakesava, C.S.7
Biedermann, B.8
Dehio, C.9
-
4
-
-
10744220468
-
-
Clark HF, Gurney AL, Abaya E, Baker K, Baldwin D, Brush J, Chen J, Chow B, Chui C, Crowley C, Currell B, Deuel B, Dowd P, Eaton D, Foster J, Grimaldi C, Gu Q, Hass PE, Heldens S, Huang A, Kim HS, Klimowski L, Jin Y, Johnson S, Lee J, Lewis L, Liao D, Mark M, Robbie E, Sanchez C, Schoenfeld J, Seshagiri S, Simmons L, Singh J, Smith V, Stinson J, Vagts A, Vandlen R, Watanabe C, Wieand D, Woods K, Xie MH, Yansura D, Yi S, Yu G, Yuan J, Zhang M, Zhang Z, Goddard A, Wood WI, Godowski P, Gray A. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. Genome Res 2003;13:2265-2270.
-
Clark HF, Gurney AL, Abaya E, Baker K, Baldwin D, Brush J, Chen J, Chow B, Chui C, Crowley C, Currell B, Deuel B, Dowd P, Eaton D, Foster J, Grimaldi C, Gu Q, Hass PE, Heldens S, Huang A, Kim HS, Klimowski L, Jin Y, Johnson S, Lee J, Lewis L, Liao D, Mark M, Robbie E, Sanchez C, Schoenfeld J, Seshagiri S, Simmons L, Singh J, Smith V, Stinson J, Vagts A, Vandlen R, Watanabe C, Wieand D, Woods K, Xie MH, Yansura D, Yi S, Yu G, Yuan J, Zhang M, Zhang Z, Goddard A, Wood WI, Godowski P, Gray A. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. Genome Res 2003;13:2265-2270.
-
-
-
-
5
-
-
1542472730
-
New connections in the prokaryotic toxin-antitoxin network: Relationship with the eukaryotic nonsense-mediated RNA decay system
-
Anantharaman V, Aravind L. New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system. Genome Biol 2003;4:R81.
-
(2003)
Genome Biol
, vol.4
-
-
Anantharaman, V.1
Aravind, L.2
-
6
-
-
44449119912
-
Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit
-
Liu M, Zhang Y, Inouye M, Woychik NA. Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit. Proc Natl Acad Sci USA 2008;105:5885-5890.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 5885-5890
-
-
Liu, M.1
Zhang, Y.2
Inouye, M.3
Woychik, N.A.4
-
7
-
-
18344375268
-
An approach to rapid protein crystallization using nanodroplets
-
Santarsiero BD, Yegian DT, Lee CC, Spraggon G, Gu J, Scheibe D, Uber DC, Cornell EW, Nordmeyer RA, Kolbe WF, Jin J, Jones AL, Jaklevic JM, Schultz PG, Stevens RC. An approach to rapid protein crystallization using nanodroplets. J Appl Crystallogr 2002;35:278-281.
-
(2002)
J Appl Crystallogr
, vol.35
, pp. 278-281
-
-
Santarsiero, B.D.1
Yegian, D.T.2
Lee, C.C.3
Spraggon, G.4
Gu, J.5
Scheibe, D.6
Uber, D.C.7
Cornell, E.W.8
Nordmeyer, R.A.9
Kolbe, W.F.10
Jin, J.11
Jones, A.L.12
Jaklevic, J.M.13
Schultz, P.G.14
Stevens, R.C.15
-
8
-
-
0037015054
-
Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline
-
Lesley SA, Kuhn P, Godzik A, Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci USA 2002;99:11664-11669.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 11664-11669
-
-
Lesley, S.A.1
Kuhn, P.2
Godzik, A.3
Deacon, A.M.4
Mathews, I.5
Kreusch, A.6
Spraggon, G.7
Klock, H.E.8
McMullan, D.9
Shin, T.10
Vincent, J.11
Robb, A.12
Brinen, L.S.13
Miller, M.D.14
McPhillips, T.M.15
Miller, M.A.16
Scheibe, D.17
Canaves, J.M.18
Guda, C.19
Jaroszewski, L.20
Selby, T.L.21
Elsliger, M.A.22
Wooley, J.23
Taylor, S.S.24
Hodgson, K.O.25
Wilson, I.A.26
Schultz, P.G.27
Stevens, R.C.28
more..
-
9
-
-
0036896410
-
An automated system to mount cryo-cooled protein crystals on a synchrotron beamline, using compact sample cassettes and a smallscale robot
-
Cohen AE, Ellis PJ, Miller MD, Deacon AM, Phizackerley RP. An automated system to mount cryo-cooled protein crystals on a synchrotron beamline, using compact sample cassettes and a smallscale robot. J Appl Crystallogr 2002;2002:720-726.
-
(2002)
J Appl Crystallogr 2002
, pp. 720-726
-
-
Cohen, A.E.1
Ellis, P.J.2
Miller, M.D.3
Deacon, A.M.4
Phizackerley, R.P.5
-
10
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 1994;50:760-763.
-
(1994)
Acta Crystallogr D Biol Crystallogr
, vol.50
, pp. 760-763
-
-
-
11
-
-
0032031476
-
Error estimates of protein structure coordinates and deviations from standard geometry by fullmatrix refinement of gammaB- and betaB2-crystallin
-
Tickle IJ, Laskowski RA, Moss DS. Error estimates of protein structure coordinates and deviations from standard geometry by fullmatrix refinement of gammaB- and betaB2-crystallin. Acta Crystallogr D Biol Crystallogr 1998;54:243-252.
-
(1998)
Acta Crystallogr D Biol Crystallogr
, vol.54
, pp. 243-252
-
-
Tickle, I.J.1
Laskowski, R.A.2
Moss, D.S.3
-
12
-
-
0036849859
-
Blu-ice and the distributed control system: Software for data acquisition and instrument control at macromolecular crystallography beamlines
-
McPhillips TM, McPhillips SE, Chiu HJ, Cohen AE, Deacon AM, Ellis PJ, Garman E, Gonzalez A, Sauter NK, Phizackerley RP, Soltis SM, Kuhn P. Blu-ice and the distributed control system: software for data acquisition and instrument control at macromolecular crystallography beamlines. J Synchrotron Radiat 2002;9:401-406.
-
(2002)
J Synchrotron Radiat
, vol.9
, pp. 401-406
-
-
McPhillips, T.M.1
McPhillips, S.E.2
Chiu, H.J.3
Cohen, A.E.4
Deacon, A.M.5
Ellis, P.J.6
Garman, E.7
Gonzalez, A.8
Sauter, N.K.9
Phizackerley, R.P.10
Soltis, S.M.11
Kuhn, P.12
-
13
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J Appl Crystallogr 1993;26:795-800.
-
(1993)
J Appl Crystallogr
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
16
-
-
50249136103
-
-
Langer G, Cohen SX, Lamzin VS, Perrakis A. Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7. Nat Protoc 2008;3:1171-1179
-
Langer G, Cohen SX, Lamzin VS, Perrakis A. Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7. Nat Protoc 2008;3:1171-1179.
-
-
-
-
18
-
-
16644393507
-
Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank
-
Yang H, Guranovic V, Dutta S, Feng Z, Berman HM, Westbrook JD. Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank. Acta Crystallogr D Biol Crystallogr 2004;60:1833-1839.
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, pp. 1833-1839
-
-
Yang, H.1
Guranovic, V.2
Dutta, S.3
Feng, Z.4
Berman, H.M.5
Westbrook, J.D.6
-
19
-
-
3242886389
-
MOLPROBITY: Structure validation and all-atom contact analysis for nucleic acids and their complexes
-
Davis IW, Murray LW, Richardson JS, Richardson DC. MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res 2004;32: W615-W619.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Davis, I.W.1
Murray, L.W.2
Richardson, J.S.3
Richardson, D.C.4
-
20
-
-
0025398721
-
WHAT IF: A molecular modeling and drug design program. J Mol Graph
-
29
-
Vriend G. WHAT IF: a molecular modeling and drug design program. J Mol Graph 1990;8:52-56, 29.
-
(1990)
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
21
-
-
0032922193
-
SFCHECK: A unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model
-
Vaguine AA, Richelle J, Wodak SJ. SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model. Acta Crystallogr D Biol Crystallogr 1999;55:191-205.
-
(1999)
Acta Crystallogr D Biol Crystallogr
, vol.55
, pp. 191-205
-
-
Vaguine, A.A.1
Richelle, J.2
Wodak, S.J.3
-
22
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
25
-
-
13444254300
-
PDBsum more: New summaries and analyses of the known 3D structures of proteins and nucleic acids
-
Laskowski RA, Chistyakov VV, Thornton JM. PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Res 2005;33:D266-D268.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Laskowski, R.A.1
Chistyakov, V.V.2
Thornton, J.M.3
-
26
-
-
85081513590
-
-
DeLano Scientific LLC, Palo Alto, CA, USA;
-
DeLano WL. The PyMOL Molecular Graphics System. DeLano Scientific LLC, Palo Alto, CA, USA; 2008. http://www.pymol.org
-
(2008)
-
-
DeLano, W.L.1
-
27
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews BW. Solvent content of protein crystals. J Mol Biol 1968;33:491-497.
-
(1968)
J Mol Biol
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
28
-
-
0020616785
-
Many gene-regulatory proteins appear to have a similar alpha-helical fold that binds DNA and evolved from a common precursor
-
Ohlendorf DH, Anderson WF, Matthews BW. Many gene-regulatory proteins appear to have a similar alpha-helical fold that binds DNA and evolved from a common precursor. J Mol Evol 1983;19:109-114.
-
(1983)
J Mol Evol
, vol.19
, pp. 109-114
-
-
Ohlendorf, D.H.1
Anderson, W.F.2
Matthews, B.W.3
-
29
-
-
15944379232
-
The many faces of the helix-turn-helix domain: Transcription regulation and beyond
-
Aravind L, Anantharaman V, Balaji S, Babu MM, Iyer LM. The many faces of the helix-turn-helix domain: transcription regulation and beyond. FEMS Microbiol Rev 2005;29:231-262.
-
(2005)
FEMS Microbiol Rev
, vol.29
, pp. 231-262
-
-
Aravind, L.1
Anantharaman, V.2
Balaji, S.3
Babu, M.M.4
Iyer, L.M.5
-
30
-
-
0033824470
-
DaliLite workbench for protein structure comparison
-
Holm L, Park J. DaliLite workbench for protein structure comparison. Bioinformatics 2000;16:566-567.
-
(2000)
Bioinformatics
, vol.16
, pp. 566-567
-
-
Holm, L.1
Park, J.2
-
31
-
-
0027372158
-
Plasmid addiction genes of bacteriophage P1: Doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained
-
Lehnherr H, Maguin E, Jafri S, Yarmolinsky MB. Plasmid addiction genes of bacteriophage P1: doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained. J Mol Biol 1993;233:414-428.
-
(1993)
J Mol Biol
, vol.233
, pp. 414-428
-
-
Lehnherr, H.1
Maguin, E.2
Jafri, S.3
Yarmolinsky, M.B.4
-
32
-
-
0031016022
-
The type IC hsd loci of the enterobacteria are flanked by DNA with high homology to the phage P1 genome: Implications for the evolution and spread of DNA restriction systems
-
Tyndall C, Lehnherr H, Sandmeier U, Kulik E, Bickle TA. The type IC hsd loci of the enterobacteria are flanked by DNA with high homology to the phage P1 genome: implications for the evolution and spread of DNA restriction systems. Mol Microbiol 1997;23: 729-736.
-
(1997)
Mol Microbiol
, vol.23
, pp. 729-736
-
-
Tyndall, C.1
Lehnherr, H.2
Sandmeier, U.3
Kulik, E.4
Bickle, T.A.5
-
33
-
-
0030596006
-
Regulation of the activity of the type IC EcoR124I restriction enzyme
-
Kulik EM, Bickle TA. Regulation of the activity of the type IC EcoR124I restriction enzyme. J Mol Biol 1996;264:891-906.
-
(1996)
J Mol Biol
, vol.264
, pp. 891-906
-
-
Kulik, E.M.1
Bickle, T.A.2
-
34
-
-
0023661199
-
Organization and sequence of the hsd genes of Escherichia coli K-12
-
Loenen WA, Daniel AS, Braymer HD, Murray NE. Organization and sequence of the hsd genes of Escherichia coli K-12. J Mol Biol 1987;198:159-170.
-
(1987)
J Mol Biol
, vol.198
, pp. 159-170
-
-
Loenen, W.A.1
Daniel, A.S.2
Braymer, H.D.3
Murray, N.E.4
-
35
-
-
0027237522
-
Delayed expression of in vivo restriction activity following conjugal transfer of Escherichia coli hsdK (restriction-modification) genes
-
Prakash-Cheng A, Ryu J. Delayed expression of in vivo restriction activity following conjugal transfer of Escherichia coli hsdK (restriction-modification) genes. J Bacteriol 1993;175:4905-4906.
-
(1993)
J Bacteriol
, vol.175
, pp. 4905-4906
-
-
Prakash-Cheng, A.1
Ryu, J.2
|