-
1
-
-
4544288672
-
Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data
-
10.1074/jbc.M403782200 15205464
-
Vo TD Greenberg HJ Palsson BO Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data The Journal of biological chemistry 2004, 279(38):39532-39540 10.1074/jbc.M403782200 15205464
-
(2004)
The Journal of Biological Chemistry
, vol.279
, Issue.38
, pp. 39532-39540
-
-
Vo, T.D.1
Greenberg, H.J.2
Palsson, B.O.3
-
2
-
-
45149111660
-
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
-
10.1038/nbt1401 18536691
-
Feist AM Palsson BO The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli Nature biotechnology 2008, 26(6):659-667 10.1038/nbt1401 18536691
-
(2008)
Nature Biotechnology
, vol.26
, Issue.6
, pp. 659-667
-
-
Feist, A.M.1
Palsson, B.O.2
-
4
-
-
0036499997
-
Modeling the heart - From genes to cells to the whole organ
-
10.1126/science.1069881 11872832
-
Noble D Modeling the heart - from genes to cells to the whole organ Science 2002, 295(5560):1678-1682 10.1126/science.1069881 11872832
-
(2002)
Science
, vol.295
, Issue.5560
, pp. 1678-1682
-
-
Noble, D.1
-
5
-
-
2942676743
-
Metabolomics and systems biology: Making sense of the soup
-
10.1016/j.mib.2004.04.012 15196499
-
Kell D Metabolomics and systems biology: Making sense of the soup Curr Opin Microbiol 2004, 7(3):296-307 10.1016/j.mib.2004.04.012 15196499
-
(2004)
Curr Opin Microbiol
, vol.7
, Issue.3
, pp. 296-307
-
-
Kell, D.1
-
6
-
-
35649027901
-
The virtual human: Towards a global systems biology of multiscale, distributed biochemical network models
-
10.1080/15216540701694252 17968707
-
Kell DB The virtual human: Towards a global systems biology of multiscale, distributed biochemical network models IUBMB life 2007, 59(11):689-695 10.1080/15216540701694252 17968707
-
(2007)
IUBMB Life
, vol.59
, Issue.11
, pp. 689-695
-
-
Kell, D.B.1
-
7
-
-
34247256814
-
Flux balance analysis of a genome-scale yeast model constrained by exometabolomic data allows metabolic system identification of genetically different strains
-
10.1021/bp060272r 17373823
-
Cakir T Efe C Dikicioglu D Hortacsu A Kirdar B Oliver SG Flux balance analysis of a genome-scale yeast model constrained by exometabolomic data allows metabolic system identification of genetically different strains Biotechnology progress 2007, 23(2):320-326 10.1021/bp060272r 17373823
-
(2007)
Biotechnology Progress
, vol.23
, Issue.2
, pp. 320-326
-
-
Cakir, T.1
Efe, C.2
Dikicioglu, D.3
Hortacsu, A.4
Kirdar, B.5
Oliver, S.G.6
-
8
-
-
33751226921
-
Systems approach to refining genome annotation
-
1859954 17088549 10.1073/pnas.0603364103
-
Reed JL Patel TR Chen KH Joyce AR Applebee MK Herring CD Bui OT Knight EM Fong SS Palsson BO Systems approach to refining genome annotation Proceedings of the National Academy of Sciences of the United States of America 2006, 103(46):17480-17484 1859954 17088549 10.1073/ pnas.0603364103
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.46
, pp. 17480-17484
-
-
Reed, J.L.1
Patel, T.R.2
Chen, K.H.3
Joyce, A.R.4
Applebee, M.K.5
Herring, C.D.6
Bui, O.T.7
Knight, E.M.8
Fong, S.S.9
Palsson, B.O.10
-
9
-
-
34547646131
-
Dynamical modeling of syncytial mitotic cycles in Drosophila embryos
-
1943426 17667953 10.1038/msb4100171
-
Calzone L Thieffry D Tyson JJ Novak B Dynamical modeling of syncytial mitotic cycles in Drosophila embryos Molecular systems biology 2007, 3:131 1943426 17667953 10.1038/msb4100171
-
(2007)
Molecular Systems Biology
, vol.3
, pp. 131
-
-
Calzone, L.1
Thieffry, D.2
Tyson, J.J.3
Novak, B.4
-
10
-
-
0242487787
-
Optknock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
-
10.1002/bit.10803
-
Burgard AP Pharkya P Maranas CD Optknock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization Biotechnology and bioengineering 2003, 84(6):647-657 10.1002/bit.10803
-
(2003)
Biotechnology and Bioengineering
, vol.84
, Issue.6
, pp. 647-657
-
-
Burgard, A.P.1
Pharkya, P.2
Maranas, C.D.3
-
11
-
-
0033985570
-
Kinetic analysis of a molecular model of the budding yeast cell cycle
-
14780 10637314
-
Chen K Csikasz-Nagy A Gyorffy B Val J Novak B Tyson J Kinetic analysis of a molecular model of the budding yeast cell cycle Mol Biol Cell 2000, 11(1):369-391 14780 10637314
-
(2000)
Mol Biol Cell
, vol.11
, Issue.1
, pp. 369-391
-
-
Chen, K.1
Csikasz-Nagy, A.2
Gyorffy, B.3
Val, J.4
Novak, B.5
Tyson, J.6
-
13
-
-
0035071155
-
Dynamic simulation of the human red blood cell metabolic network
-
10.1093/bioinformatics/17.3.286 11294796
-
Jamshidi N Edwards JS Fahland T Church GM Palsson BO Dynamic simulation of the human red blood cell metabolic network Bioinformatics 2001, 17(3):286-287 10.1093/bioinformatics/17.3.286 11294796
-
(2001)
Bioinformatics
, vol.17
, Issue.3
, pp. 286-287
-
-
Jamshidi, N.1
Edwards, J.S.2
Fahland, T.3
Church, G.M.4
Palsson, B.O.5
-
14
-
-
0024842144
-
Metabolic dynamics in the human red cell. Part I - A comprehensive kinetic model
-
10.1016/S0022-5193(89)80233-4 2630803
-
Joshi A Palsson BO Metabolic dynamics in the human red cell. Part I - A comprehensive kinetic model J Theor Biol 1989, 141(4):515-528 10.1016/ S0022-5193(89)80233-4 2630803
-
(1989)
J Theor Biol
, vol.141
, Issue.4
, pp. 515-528
-
-
Joshi, A.1
Palsson, B.O.2
-
15
-
-
0025095641
-
Metabolic dynamics in the human red cell. Part III - Metabolic reaction rates
-
10.1016/S0022-5193(05)80012-8 2141093
-
Joshi A Palsson BO Metabolic dynamics in the human red cell. Part III - Metabolic reaction rates J Theor Biol 1990, 142(1):41-68 10.1016/ S0022-5193(05)80012-8 2141093
-
(1990)
J Theor Biol
, vol.142
, Issue.1
, pp. 41-68
-
-
Joshi, A.1
Palsson, B.O.2
-
16
-
-
0036851376
-
In silico model-driven assessment of the effects of single nucleotide polymorphisms (SNPs) on human red blood cell metabolism
-
187553 12421755 10.1101/gr.329302
-
Jamshidi N Wiback SJ Palsson BB In silico model-driven assessment of the effects of single nucleotide polymorphisms (SNPs) on human red blood cell metabolism Genome Res 2002, 12(11):1687-1692 187553 12421755 10.1101/gr.329302
-
(2002)
Genome Res
, vol.12
, Issue.11
, pp. 1687-1692
-
-
Jamshidi, N.1
Wiback, S.J.2
Palsson, B.B.3
-
17
-
-
0025366174
-
The genetics of glucose-6-phosphate dehydrogenase deficiency
-
2190319
-
Beutler E The genetics of glucose-6-phosphate dehydrogenase deficiency Seminars in hematology 1990, 27(2):137-164 2190319
-
(1990)
Seminars in Hematology
, vol.27
, Issue.2
, pp. 137-164
-
-
Beutler, E.1
-
18
-
-
0034431029
-
Red cell pyruvate kinase deficiency: From genetics to clinical manifestations
-
Zanella A Bianchi P Red cell pyruvate kinase deficiency: From genetics to clinical manifestations Bailliere's best practice & research 2000, 13(1):57-81
-
(2000)
Bailliere's Best Practice & Research
, vol.13
, Issue.1
, pp. 57-81
-
-
Zanella, A.1
Bianchi, P.2
-
19
-
-
0036306730
-
Hematologically important mutations: Glucose-6-phosphate dehydrogenase
-
10.1006/bcmd.2002.0490 12064901
-
Beutler E Vulliamy TJ Hematologically important mutations: glucose-6-phosphate dehydrogenase Blood cells, molecules & diseases 2002, 28(2):93-103 10.1006/bcmd.2002.0490 12064901
-
(2002)
Blood Cells, Molecules & Diseases
, vol.28
, Issue.2
, pp. 93-103
-
-
Beutler, E.1
Vulliamy, T.J.2
-
20
-
-
0034430020
-
Chronic non-spherocytic haemolytic disorders associated with glucose-6-phosphate dehydrogenase variants
-
10916677
-
Fiorelli G Martinez di Montemuros F Cappellini MD Chronic non-spherocytic haemolytic disorders associated with glucose-6-phosphate dehydrogenase variants Baillieres Best Pract Res Clin Haematol 2000, 13(1):39-55 10916677
-
(2000)
Baillieres Best Pract Res Clin Haematol
, vol.13
, Issue.1
, pp. 39-55
-
-
Fiorelli, G.1
Martinez di Montemuros, F.2
Cappellini, M.D.3
-
21
-
-
0035996969
-
Description and analysis of metabolic connectivity and dynamics in the human red blood cell
-
1302176 12124254 10.1016/S0006-3495(02)75198-9
-
Kauffman KJ Pajerowski JD Jamshidi N Palsson BO Edwards JS Description and analysis of metabolic connectivity and dynamics in the human red blood cell Biophys J 2002, 83(2):646-662 1302176 12124254 10.1016/ S0006-3495(02)75198-9
-
(2002)
Biophys J
, vol.83
, Issue.2
, pp. 646-662
-
-
Kauffman, K.J.1
Pajerowski, J.D.2
Jamshidi, N.3
Palsson, B.O.4
Edwards, J.S.5
-
22
-
-
52949144952
-
Top-down analysis of temporal hierarchy in biochemical reaction networks
-
2518853 18787685 10.1371/journal.pcbi.1000177
-
Jamshidi N Palsson BO Top-down analysis of temporal hierarchy in biochemical reaction networks PLoS computational biology 2008, 4(9):e1000177 2518853 18787685 10.1371/journal.pcbi.1000177
-
(2008)
PLoS Computational Biology
, vol.4
, Issue.9
-
-
Jamshidi, N.1
Palsson, B.O.2
-
23
-
-
0021734908
-
Mathematical modelling of dynamics and control in metabolic networks. I. On Michaelis-Menten kinetics
-
10.1016/S0022-5193(84)80211-8 6513572
-
Palsson BO Lightfoot EN Mathematical modelling of dynamics and control in metabolic networks. I. On Michaelis-Menten kinetics J Theor Biol 1984, 111(2):273-302 10.1016/S0022-5193(84)80211-8 6513572
-
(1984)
J Theor Biol
, vol.111
, Issue.2
, pp. 273-302
-
-
Palsson, B.O.1
Lightfoot, E.N.2
-
24
-
-
0014353859
-
The energy charge of the adenylate pool as a regulatory parameter. Interaction with feedback modifiers
-
10.1021/bi00851a033 4972613
-
Atkinson DE The energy charge of the adenylate pool as a regulatory parameter. Interaction with feedback modifiers Biochemistry 1968, 7(11):4030-4034 10.1021/bi00851a033 4972613
-
(1968)
Biochemistry
, vol.7
, Issue.11
, pp. 4030-4034
-
-
Atkinson, D.E.1
-
26
-
-
0020079739
-
Cellular levels, excretion, and synthesis rates of cyclic AMP in Escherichia coli grown in continuous culture
-
216465 6277853
-
Matin A Matin MK Cellular levels, excretion, and synthesis rates of cyclic AMP in Escherichia coli grown in continuous culture J Bacteriol 1982, 149(3):801-807 216465 6277853
-
(1982)
J Bacteriol
, vol.149
, Issue.3
, pp. 801-807
-
-
Matin, A.1
Matin, M.K.2
-
27
-
-
0024963695
-
A hierarchy of regulatory genes controls a larva-to-adult developmental switch in C. elegans
-
10.1016/0092-8674(89)90171-2 2702689
-
Ambros V A hierarchy of regulatory genes controls a larva-to-adult developmental switch in C. elegans Cell 1989, 57(1):49-57 10.1016/ 0092-8674(89)90171-2 2702689
-
(1989)
Cell
, vol.57
, Issue.1
, pp. 49-57
-
-
Ambros, V.1
-
28
-
-
0021771445
-
Heterochronic mutants of the nematode Caenorhabditis elegans
-
10.1126/science.6494891 6494891
-
Ambros V Horvitz HR Heterochronic mutants of the nematode Caenorhabditis elegans Science 1984, 226(4673):409-416 10.1126/science.6494891 6494891
-
(1984)
Science
, vol.226
, Issue.4673
, pp. 409-416
-
-
Ambros, V.1
Horvitz, H.R.2
-
29
-
-
34249665533
-
Heterochronic genes and the nature of developmental time
-
10.1016/j.cub.2007.03.043 17550772
-
Moss EG Heterochronic genes and the nature of developmental time Curr Biol 2007, 17(11):R425-434 10.1016/j.cub.2007.03.043 17550772
-
(2007)
Curr Biol
, vol.17
, Issue.11
-
-
Moss, E.G.1
-
30
-
-
46349105936
-
Optimization in computational systems biology
-
2435524 18507829 10.1186/1752-0509-2-47
-
Banga JR Optimization in computational systems biology BMC Syst Biol 2008, 2:47 2435524 18507829 10.1186/1752-0509-2-47
-
(2008)
BMC Syst Biol
, vol.2
, pp. 47
-
-
Banga, J.R.1
-
31
-
-
42549159572
-
OptCircuit: An optimization based method for computational design of genetic circuits
-
2324073 18315885 10.1186/1752-0509-2-24
-
Dasika MS Maranas CD OptCircuit: An optimization based method for computational design of genetic circuits BMC Syst Biol 2008, 2:24 2324073 18315885 10.1186/1752-0509-2-24
-
(2008)
BMC Syst Biol
, vol.2
, pp. 24
-
-
Dasika, M.S.1
Maranas, C.D.2
-
32
-
-
0242490789
-
Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: Insights from an identifiability analysis of an in silico network
-
403758 14597654 10.1101/gr.1198103
-
Zak DE Gonye GE Schwaber JS Doyle FJ 3rd Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: Insights from an identifiability analysis of an in silico network Genome Res 2003, 13(11):2396-2405 403758 14597654 10.1101/gr.1198103
-
(2003)
Genome Res
, vol.13
, Issue.11
, pp. 2396-2405
-
-
Zak, D.E.1
Gonye, G.E.2
Schwaber, J.S.3
Doyle III, F.J.4
-
33
-
-
25444510601
-
Iterative approach to model identification of biological networks
-
1189077 15967022 10.1186/1471-2105-6-155
-
Gadkar KG Gunawan R Doyle FJ 3rd Iterative approach to model identification of biological networks BMC Bioinformatics 2005, 6:155 1189077 15967022 10.1186/1471-2105-6-155
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 155
-
-
Gadkar, K.G.1
Gunawan, R.2
Doyle III, F.J.3
|