메뉴 건너뛰기




Volumn 238, Issue 6, 2009, Pages 1433-1443

Toward defining the phosphoproteome of Xenopus laevis embryos

Author keywords

Embryo; Mass spectrometry; Phosphorylation; Proteomics; Xenopus

Indexed keywords

PHOSPHOPROTEOME; PROTEOME; UNCLASSIFIED DRUG;

EID: 66349119550     PISSN: 10588388     EISSN: 10970177     Source Type: Journal    
DOI: 10.1002/dvdy.21941     Document Type: Article
Times cited : (16)

References (49)
  • 2
    • 33749853607 scopus 로고    scopus 로고
    • A probability-based approach for high-throughput protein phosphorylation analysis and site localization
    • DOI 10.1038/nbt1240, PII NBT1240
    • Beausoleil SA, Villen J, Gerber SA, Rush J, Gygi SP. 2006. A probability-based approach for high-throughput protein phosphorylation analysis and site localization. Nat Biotechnol 24:1285-1292. (Pubitemid 44564776)
    • (2006) Nature Biotechnology , vol.24 , Issue.10 , pp. 1285-1292
    • Beausoleil, S.A.1    Villen, J.2    Gerber, S.A.3    Rush, J.4    Gygi, S.P.5
  • 3
    • 56349133075 scopus 로고    scopus 로고
    • APC shuttling to the membrane, nucleus and beyond
    • Brocardo M, Henderson BR. 2008. APC shuttling to the membrane, nucleus and beyond. Trends Cell Biol 18:587-596.
    • (2008) Trends Cell Biol , vol.18 , pp. 587-596
    • Brocardo, M.1    Henderson, B.R.2
  • 5
    • 4344683981 scopus 로고    scopus 로고
    • Anion dependence in the partitioning between proton and electron transfer in ion/ion reactions
    • Coon JJ, Syka JEP, Schwartz JC, Shabanowitz J, Hunt DF. 2004. Anion dependence in the partitioning between proton and electron transfer in ion/ion reactions. Int J Mass Spectrom 236:33-42.
    • (2004) Int J Mass Spectrom , vol.236 , pp. 33-42
    • Coon, J.J.1    Syka, J.E.P.2    Schwartz, J.C.3    Shabanowitz, J.4    Hunt, D.F.5
  • 6
    • 17244367375 scopus 로고    scopus 로고
    • Tandem mass spectrometry for peptide and protein sequence analysis
    • Coon JJ, Syka JE, Shabanowitz J, Hunt DF. 2005a. Tandem mass spectrometry for peptide and protein sequence analysis. Biotechniques 38:519, 521, 523. (Pubitemid 40529423)
    • (2005) BioTechniques , vol.38 , Issue.4 , pp. 519-523
    • Coon, J.J.1    Syka, J.E.P.2    Shabanowitz, J.3    Hunt, D.F.4
  • 9
    • 0026311269 scopus 로고
    • Biochemical fractionation of oocytes
    • Evans JP, Kay BK. 1991. Biochemical fractionation of oocytes. Methods Cell Biol 36:133-148.
    • (1991) Methods Cell Biol , vol.36 , pp. 133-148
    • Evans, J.P.1    Kay, B.K.2
  • 12
    • 3042540826 scopus 로고    scopus 로고
    • Defining a large set of full-length clones from a Xenopus tropicalis EST project
    • DOI 10.1016/j.ydbio.2004.04.023, PII S0012160604003136
    • Gilchrist MJ, Zorn AM, Voigt J, Smith JC, Papalopulu N, Amaya E. 2004. Defining a large set of full-length clones from a Xenopus tropicalis EST project. Dev Biol 271:498-516. (Pubitemid 38833677)
    • (2004) Developmental Biology , vol.271 , Issue.2 , pp. 498-516
    • Gilchrist, M.J.1    Zorn, A.M.2    Voigt, J.3    Smith, J.C.4    Papalopulu, N.5    Amaya, E.6
  • 14
    • 33746531832 scopus 로고    scopus 로고
    • Advancing proteomics with ion/ion chemistry
    • DOI 10.2144/000112194
    • Good DM, Coon JJ. 2006. Advancing proteomics with ion/ion chemistry. Biotechniques 40:783-789. (Pubitemid 46534919)
    • (2006) BioTechniques , vol.40 , Issue.6 , pp. 783-789
    • Good, D.M.1    Coon, J.J.2
  • 17
    • 0028029983 scopus 로고
    • CPEB is a specificity factor that mediates cytoplasmic polyadenylation during Xenopus oocyte maturation
    • DOI 10.1016/0092-8674(94)90547-9
    • Hake LE, Richter JD. 1994. CPEB is a specificity factor that mediates cytoplasmic polyadenylation during Xenopus oocyte maturation. Cell 79:617-627. (Pubitemid 24363805)
    • (1994) Cell , vol.79 , Issue.4 , pp. 617-627
    • Hake, L.E.1    Richter, J.D.2
  • 19
    • 33748320817 scopus 로고    scopus 로고
    • RSK aand MSK in MAP kinase signalling
    • DOI 10.1242/jcs.02950
    • Hauge C, Frodin M. 2006. RSK and MSK in MAP kinase signalling. J Cell Sci 119:3021-3023. (Pubitemid 44322115)
    • (2006) Journal of Cell Science , vol.119 , Issue.15 , pp. 3021-3023
    • Hauge, C.1    Frodin, M.2
  • 21
    • 0034213262 scopus 로고    scopus 로고
    • Beta-catenin signaling activity dissected in the early Xenopus embryo: A novel antisense approach
    • DOI 10.1006/dbio.2000.9720
    • Heasman J, Kofron M, Wylie C. 2000. Beta-catenin signaling activity dissected in the early Xenopus embryo: a novel antisense approach. Dev Biol 222:124-134. (Pubitemid 30387734)
    • (2000) Developmental Biology , vol.222 , Issue.1 , pp. 124-134
    • Heasman, J.1    Kofron, M.2    Wylie, C.3
  • 22
    • 17444375706 scopus 로고    scopus 로고
    • Complementary structural information from a tryptic N-linked glycopeptide via electron transfer ion/ion reactions and collision-induced dissociation
    • DOI 10.1021/pr049770q
    • Hogan JM, Pitteri SJ, Chrisman PA, McLuckey SA. 2005. Complementary structural information from a tryptic N-linked glycopeptide via electron transfer ion/ion reactions and collision-induced dissociation. J Proteome Res 4:628-632. (Pubitemid 40548173)
    • (2005) Journal of Proteome Research , vol.4 , Issue.2 , pp. 628-632
    • Hogan, J.M.1    Pitteri, S.J.2    Chrisman, P.A.3    McLuckey, S.A.4
  • 24
    • 38649083118 scopus 로고    scopus 로고
    • Assigning significance to peptides identified by tandem mass spectrometry using decoy databases
    • Käll L, Storey JD, MacCoss MJ, Noble WS. 2008. Assigning significance to peptides identified by tandem mass spectrometry using decoy databases. J Proteome Res 7:29-34.
    • (2008) J Proteome Res , vol.7 , pp. 29-34
    • Käll, L.1    Storey, J.D.2    MacCoss, M.J.3    Noble, W.S.4
  • 26
    • 0034284936 scopus 로고    scopus 로고
    • Designation of the anterior/posterior axis in pregastrula Xenopus laevis
    • Lane MC, Sheets MD. 2000. Designation of the anterior/posterior axis in pregastrula Xenopus laevis. Dev Biol 225:37-58.
    • (2000) Dev Biol , vol.225 , pp. 37-58
    • Lane, M.C.1    Sheets, M.D.2
  • 27
    • 16644395419 scopus 로고    scopus 로고
    • BMP antagonism by Spemann's organizer regulates rostral-caudal fate of mesoderm
    • DOI 10.1016/j.ydbio.2004.08.012
    • Lane MC, Davidson L, Sheets MD. 2004. BMP antagonism by Spemann's organizer regulates rostral-caudal fate of mesoderm. Dev Biol 275:356-374. (Pubitemid 40288093)
    • (2004) Developmental Biology , vol.275 , Issue.2 , pp. 356-374
    • Lane, M.C.1    Davidson, L.2    Sheets, M.D.3
  • 29
    • 0037155691 scopus 로고    scopus 로고
    • Control of beta-catenin phosphorylation/degradation by a dual-kinase mechanism
    • DOI 10.1016/S0092-8674(02)00685-2
    • Liu C, Li Y, Semenov M, Han C, Baeg GH, Tan Y, Zhang Z, Lin X, He X. 2002. Control of beta-catenin phosphorylation/degradation by a dual-kinase mechanism. Cell 108:837-847. (Pubitemid 34327534)
    • (2002) Cell , vol.108 , Issue.6 , pp. 837-847
    • Liu, C.1    Li, Y.2    Semenov, M.3    Han, C.4    Baeg, G.-H.5    Tan, Y.6    Zhang, Z.7    Lin, X.8    He, X.9
  • 31
    • 0034665968 scopus 로고    scopus 로고
    • Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI Fourier transform ion cyclotron resonance mass spectrometry
    • Martin SE, Shabanowitz J, Hunt DF, Marto JA. 2000. Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI Fourier transform ion cyclotron resonance mass spectrometry. Anal Chem 72:4266-4274.
    • (2000) Anal Chem , vol.72 , pp. 4266-4274
    • Martin, S.E.1    Shabanowitz, J.2    Hunt, D.F.3    Marto, J.A.4
  • 34
    • 0033634850 scopus 로고    scopus 로고
    • Phosphorylation of CPEB by Eg2 mediates the recruitment of CPSF into an active cytoplasmic polyadenylation complex
    • Mendez R, Murthy KG, Ryan K, Manley JL, Richter JD. 2000. Phosphorylation of CPEB by Eg2 mediates the recruitment of CPSF into an active cytoplasmic polyadenylation complex. Mol Cell 6:1253-1259.
    • (2000) Mol Cell , vol.6 , pp. 1253-1259
    • Mendez, R.1    Murthy, K.G.2    Ryan, K.3    Manley, J.L.4    Richter, J.D.5
  • 35
    • 0035884128 scopus 로고    scopus 로고
    • The FGFR pathway is required for the trunk-inducing functions of Spemann's organizer
    • DOI 10.1006/dbio.2001.0385
    • Mitchell TS, Sheets MD. 2001. The FGFR pathway is required for the trunk-inducing functions of Spemann's organizer. Dev Biol 237:295-305. (Pubitemid 32881122)
    • (2001) Developmental Biology , vol.237 , Issue.2 , pp. 295-305
    • Mitchell, T.S.1    Sheets, M.D.2
  • 36
    • 33846187304 scopus 로고    scopus 로고
    • Chordin affects pronephros development in Xenopus embryos by anteriorizing presomitic mesoderm
    • DOI 10.1002/dvdy.21014
    • Mitchell T, Jones EA, Weeks DL, Sheets MD. 2007. Chordin affects pronephros development in Xenopus embryos by anteriorizing presomitic mesoderm. Dev Dyn 236:251-261. (Pubitemid 46095096)
    • (2007) Developmental Dynamics , vol.236 , Issue.1 , pp. 251-261
    • Mitchell, T.1    Jones, E.A.2    Weeks, D.L.3    Sheets, M.D.4
  • 38
    • 33750112777 scopus 로고    scopus 로고
    • Improved immobilized metal affinity chromatography for large-scale phosphoproteomics applications
    • DOI 10.1021/pr0602803
    • Ndassa YM, Orsi C, Marto JA, Chen S, Ross MM. 2006. Improved immobilized metal affinity chromatography for large-scale phosphoproteomics applications. J Proteome Res 5:2789-2799. (Pubitemid 44595179)
    • (2006) Journal of Proteome Research , vol.5 , Issue.10 , pp. 2789-2799
    • Ndassa, Y.M.1    Orsi, C.2    Marto, J.A.3    Chen, S.4    Ross, M.M.5
  • 39
    • 33750456519 scopus 로고    scopus 로고
    • Global, in Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks
    • DOI 10.1016/j.cell.2006.09.026, PII S0092867406012748
    • Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M. 2006. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 127:635-648. (Pubitemid 44647421)
    • (2006) Cell , vol.127 , Issue.3 , pp. 635-648
    • Olsen, J.V.1    Blagoev, B.2    Gnad, F.3    Macek, B.4    Kumar, C.5    Mortensen, P.6    Mann, M.7
  • 41
    • 0346497760 scopus 로고    scopus 로고
    • Progesterone and insulin stimulation of CPEB-dependent polyadenylation is regulated by Aurora a and glycogen synthase kinase-3
    • DOI 10.1101/gad.1136004
    • Sarkissian M, Mendez R, Richter JD. 2004. Progesterone and insulin stimulation of CPEB-dependent polyadenylation is regulated by Aurora A and glycogen synthase kinase-3. Genes Dev 18:48-61. (Pubitemid 38090687)
    • (2004) Genes and Development , vol.18 , Issue.1 , pp. 48-61
    • Sarkissian, M.1    Mendez, R.2    Richter, J.D.3
  • 42
    • 33846269339 scopus 로고    scopus 로고
    • Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors
    • DOI 10.1021/ac061457f
    • Swaney DL, McAlister GC, Wirtala M, Schwartz JC, Syka JEP, Coon JJ. 2007. Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors. Anal Chem 79:477-485. (Pubitemid 46110632)
    • (2007) Analytical Chemistry , vol.79 , Issue.2 , pp. 477-485
    • Swaney, D.L.1    McAlister, G.C.2    Wirtala, M.3    Schwartz, J.C.4    Syka, J.E.P.5    Coon, J.J.6
  • 44
    • 27744534898 scopus 로고    scopus 로고
    • Functions and regulations of fibroblast growth factor signaling during embryonic development
    • DOI 10.1016/j.ydbio.2005.09.011, PII S0012160605006184
    • Thisse B, Thisse C. 2005. Functions and regulations of fibroblast growth factor signaling during embryonic development. Dev Biol 287:390-402. (Pubitemid 41636772)
    • (2005) Developmental Biology , vol.287 , Issue.2 , pp. 390-402
    • Thisse, B.1    Thisse, C.2
  • 46
    • 4444345209 scopus 로고    scopus 로고
    • Move it or lose it: Axis specification in Xenopus
    • DOI 10.1242/dev.01284
    • Weaver C, Kimelman D. 2004. Move it or lose it: axis specification in Xenopus. Development 131:3491-3499. (Pubitemid 39199362)
    • (2004) Development , vol.131 , Issue.15 , pp. 3491-3499
    • Weaver, C.1    Kimelman, D.2
  • 47
    • 14044254823 scopus 로고    scopus 로고
    • Embryonic poly(A)-binding protein stimulates translation in germ cells
    • DOI 10.1128/MCB.25.5.2060-2071.2005
    • Wilkie GS, Gautier P, Lawson D, Gray NK. 2005. Embryonic poly(A)-binding protein stimulates translation in germ cells. Mol Cell Biol 25:2060-2071. (Pubitemid 40280166)
    • (2005) Molecular and Cellular Biology , vol.25 , Issue.5 , pp. 2060-2071
    • Wilkie, G.S.1    Gautier, P.2    Lawson, D.3    Gray, N.K.4
  • 48
    • 28644439005 scopus 로고    scopus 로고
    • A dual-kinase mechanism for Wnt co-receptor phosphorylation and activation
    • DOI 10.1038/nature04185
    • Zeng X, Tamai K, Doble B, Li S, Huang H, Habas R, Okamura H, Woodgett J, He X. 2005. A dual-kinase mechanism for Wnt co-receptor phosphorylation and activation. Nature 438:873-877. (Pubitemid 41753071)
    • (2005) Nature , vol.438 , Issue.7069 , pp. 873-877
    • Zeng, X.1    Tamai, K.2    Doble, B.3    Li, S.4    Huang, H.5    Habas, R.6    Okamura, H.7    Woodgett, J.8    He, X.9
  • 49
    • 0000944563 scopus 로고    scopus 로고
    • Electron Capture Dissociation of Mulitiply Charged Protein Cations. A Nonergodic Process
    • Zubarev RA, Kelleher NL, McLafferty FW. 1998. Electron Capture Dissociation of Mulitiply Charged Protein Cations. A Nonergodic Process. J Am Chem Soc 120:3265-3266.
    • (1998) J Am Chem Soc , vol.120 , pp. 3265-3266
    • Zubarev, R.A.1    Kelleher, N.L.2    McLafferty, F.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.