Observations on the detection of b- and y-type ions in the collisionally activated decomposition spectra of protonated peptides

Rapid Communications in Mass Spectrometry

Volumn 23, Issue 10, 2009, Pages 1508-1514

  Lau, King Wai ^a   Hart, Sarah R ^a   Lynch, Jennifer A ^a   Wong, Stephen C C ^a   Hubbard, Simon J ^a   Gaskell, Simon J ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DATABASE SYSTEMS; INFORMATION RETRIEVAL; IONS; MASS SPECTROMETERS; MASS SPECTROMETRY; SEARCH ENGINES;

DATABASE SEARCHING; N-TERMINALS; PRODUCT ION SPECTRA; PRODUCT IONS; QUADRUPOLE ION TRAPS; QUADRUPOLE/TIME OF FLIGHTS; SEARCHING STRATEGY; SPECTRA'S; TANDEM MASS SPECTRA; TRYPTIC PEPTIDES;

PEPTIDES;

EID: 66149174786     PISSN: 09514198     EISSN: 10970231     Source Type: Journal    
DOI: 10.1002/rcm.4032     Document Type: Article

References (34)

1. Eng JK, McCormack AL, Yates JR. J. Am. Soc. Mass Spectrom. 1994; 5: 976.
2. Sadygov RG, Cociorva D, Yates JR 3rd. Nat Methods 2004; 1: 195.
3. Steen H, Mann M. Nat. Rev. Mol. Cell. Biol. 2004; 5: 699.
4. Craig R, Beavis RC. Bioinformatics 2004; 20: 1466.
5. Yates JR 3rd, Eng JK, McCormack AL, Schieltz D. Anal. Chem. 1995; 67: 1426.
6. Zhang Z. Anal. Chem. 2004; 76: 3908.
7. Zhou C, Bowler LD, Feng J. BMC Bioinformatics 2008; 9: 325.
8. Harrison AG, Young AB, Bleiholder C, Suhai S, Paizs B. J. Am. Chem. Soc. 2006; 128: 10364.
9. Cox KA, Gaskell SJ, Morris M, Whiting A. J. Am. Soc. Mass Spectrom. 1996; 7: 522.
10. Tsaprailis G, Nair H, Somogyi A, Wysocki VH, Zhong WQ, Futrell JH, Summerfield SG, Gaskell SJ. J. Am. Chem. Soc. 1999; 121: 5142.
11. Paizs B, Suhai S. Mass Spectrom. Rev. 2005; 24: 508.
12. Reid GE, Wu J, Chrisman PA, Wells JM, McLuckey SA. Anal. Chem. 2001; 73: 3274.
13. Ballard KD, Gaskell SJ. Int. J. Mass Spectrom. Ion Processes 1991; 111: 173.
14. Dongre AR, Jones JL, Somogyi A, Wysocki VH. J.. Am. Chem. Soc. 1996; 118: 8365.
15. Huang Y, Triscari JM, Tseng GC, Pasa-Tolic L, Lipton MS, Smith RD, Wysocki VH. Anal. Chem. 2005; 77: 5800.
16. Kapp EA, Schutz F, Reid GE, Eddes JS, Moritz RL, OΉair RA, Speed TP, Simpson RJ. Anal. Chem. 2003; 75: 6251.
17. Barton SJ, Richardson S, Perkins DN, Bellahn I, Bryant TN, Whittaker C Anal. Chem. 2007; 79: 5601.
18. Huang Y, Tseng GC, Yuan S, Pasa-Tolic L, Lipton MS, Smith RD, Wysocki VH. J. Proteome Res. 2008; 7: 70.
19. Wells JM, McLuckey SA. Methods Enzymol. 2005; 402: 148.
20. Poke MJ, Ren D, Wesdemiotis C. J. Mass Spectrom. 2000; 35: 1391.
21. Roepstorff P, Fohlman J. Bίomed. Mass Spectrom. 1984; 11:601.
22. Biemann K. Methods Enzymol. 1990; 193: 886.
23. Tabb DL, Smith LL, Breci LA, Wysocki VH, Lin D, Yates JR 3rd. Anal. Chem. 2003; 75: 1155.
24. Wysocki VH, Tsaprailis G, Smith LL, Breci LA. J. Mass Spectrom. 2000; 35: 1399.
25. Yates JR 3rd, Morgan SF, Gatlin CL, Griffin PR, Eng JK. Anal. Chem. 1998; 70: 3557.
26. Yalcin T, Csizmadia IG, Peterson MR, Harrison AG. J. Am. Soc. Mass Spectrom. 1996; 7: 233.
27. Polfer NC, Bohrer BC, Plasencia MD, Paizs B, Clemmer DE. J. Phys. Chem. A 2008; 112: 1286.
28. Riba-Garcia I, Giles K, Bateman RH, Gaskell SJ. J. Am. Soc. Mass Spectrom. 2008; 19: 609.
29. McLaughlin T, Siepen JA, Selley J, Lynch JA, Lau KW, Yin H, Gaskell SJ, Hubbard SJ. Nucleic Acids Res. 2006; 34: D649.
30. Perkins DN, Pappin DJ, Creasy DM, Cottrell JS. Electropho-resis 1999; 20: 3551.
31. Keller A, Eng J, Zhang N, Li XJ, Aebersold R. Mol. Syst. Biol 2005; 1: 0017.
32. Rivers J, Simpson DM, Robertson DH, Gaskell SJ, Beynon RJ. Mol. Cell. Proteomics 2007; 6: 1416.
33. Beynon RJ, Doherty MK, Pratt JM, Gaskell SJ. Nat. Methods 2005; 2: 587.
34. March RE. J. Mass Spectrom. 1997; 32: 351.