메뉴 건너뛰기




Volumn 9, Issue 1, 2009, Pages

DIRS1-like retrotransposons are widely distributed among Decapoda and are particularly present in hydrothermal vent organisms

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN DIRS1; TYROSINE DERIVATIVE; UNCLASSIFIED DRUG;

EID: 66149120200     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-9-86     Document Type: Article
Times cited : (17)

References (76)
  • 1
    • 46449117054 scopus 로고    scopus 로고
    • Coupling metabolite flux to transcriptomics: Insights into the molecular mechanisms underlying primary productivity by the hydrothermal vent tubeworm Ridgeia piscesae
    • 18574102
    • Coupling metabolite flux to transcriptomics: insights into the molecular mechanisms underlying primary productivity by the hydrothermal vent tubeworm Ridgeia piscesae. SV Nyholm J Robidart PR Girguis, Biol Bull 2008 214 255 265 18574102
    • (2008) Biol Bull , vol.214 , pp. 255-265
    • Nyholm, S.V.1    Robidart, J.2    Girguis, P.R.3
  • 2
    • 0032870868 scopus 로고    scopus 로고
    • Chemical environment of the hydrothermal mussel communities in the Lucky Strike and Menez Gwen vent fields, Mid Atlantic Ridge
    • Chemical environment of the hydrothermal mussel communities in the Lucky Strike and Menez Gwen vent fields, Mid Atlantic Ridge. P Sarradin J Caprais R Riso R Kerouel A Aminot, Cahiers de biologie marine 1999 40 93 104 (Pubitemid 29440261)
    • (1999) Cahiers de Biologie Marine , vol.40 , Issue.1 , pp. 93-104
    • Sarradin, P.-M.1    Caprais, J.-C.2    Riso, R.3    Kerouel, R.4    Aminot, A.5
  • 3
    • 0037083414 scopus 로고    scopus 로고
    • Evolution and biogeography of deep-sea vent and seep invertebrates
    • 10.1126/science.1067361 11847331
    • Evolution and biogeography of deep-sea vent and seep invertebrates. CL Van Dover CR German KG Speer LM Parson RC Vrijenhoek, Science 2002 295 1253 1257 10.1126/science.1067361 11847331
    • (2002) Science , vol.295 , pp. 1253-1257
    • Van Dover, C.L.1    German, C.R.2    Speer, K.G.3    Parson, L.M.4    Vrijenhoek, R.C.5
  • 4
    • 0037166008 scopus 로고    scopus 로고
    • Hydrothermal systems. Stirring the oceanic incubator
    • 10.1126/science.1072075 12029115
    • Hydrothermal systems. Stirring the oceanic incubator. RP Dziak HP Johnson, Science 2002 296 1406 1407 10.1126/science.1072075 12029115
    • (2002) Science , vol.296 , pp. 1406-1407
    • Dziak, R.P.1    Johnson, H.P.2
  • 6
    • 0027146069 scopus 로고
    • L'enigme du comportement trophique des crevettes Alvinocarididae des sites hydrothermaux de la dorsale medio-atlantique
    • L'énigme du comportement trophique des crevettes Alvinocarididae des sites hydrothermaux de la dorsale médio-atlantique. M Segonzac M de Saint-Laurent B Casanova, Cahiers de biologie marine 1993 34 535 571 (Pubitemid 2049398)
    • (1993) CAH.BIOL.MAR. , vol.34 , Issue.4 , pp. 535-571
    • Segonzac, M.1    De Saint Laurent, M.2    Casanova, B.3
  • 7
    • 0042268012 scopus 로고    scopus 로고
    • Heat-shock response and temperature resistance in the deep-sea vent shrimp Rimicaris exoculata
    • 10.1242/jeb.00419 12796451
    • Heat-shock response and temperature resistance in the deep-sea vent shrimp Rimicaris exoculata. J Ravaux F Gaill N Le Bris P Sarradin D Jollivet B Shillito, J Exp Biol 2003 206 2345 2354 10.1242/jeb.00419 12796451
    • (2003) J Exp Biol , vol.206 , pp. 2345-2354
    • Ravaux, J.1    Gaill, F.2    Le Bris, N.3    Sarradin, P.4    Jollivet, D.5    Shillito, B.6
  • 9
    • 0030302805 scopus 로고    scopus 로고
    • Specific and genetic diversity at deep-sea hydrothermal vents: An overview
    • Specific and genetic diversity at deep-sea hydrothermal vents: an overview. D Jollivet, Biodiversity and Conservation 1996 5 1619 1653 10.1007/BF00052119 (Pubitemid 27050127)
    • (1996) Biodiversity and Conservation , vol.5 , Issue.12 , pp. 1619-1653
    • Jollivet, D.1
  • 10
    • 0034737350 scopus 로고    scopus 로고
    • Diversity at deep-sea hydrothermal vent and intertidal mussel beds
    • Diversity at deep-sea hydrothermal vent and intertidal mussel beds. CL Van Dover JL Trask, Marine Ecology Progress Series 2000 195 169 178 10.3354/meps195169 (Pubitemid 30221220)
    • (2000) Marine Ecology Progress Series , vol.195 , pp. 169-178
    • Van Dover, C.L.1    Trask, J.L.2
  • 12
    • 0030207150 scopus 로고    scopus 로고
    • Turned on by stress. Plant retrotransposons
    • 10.1016/S0960-9822(02)00638-3 8805314
    • Turned on by stress. Plant retrotransposons. SR Wessler, Curr Biol 1996 6 959 961 10.1016/S0960-9822(02)00638-3 8805314
    • (1996) Curr Biol , vol.6 , pp. 959-961
    • Wessler, S.R.1
  • 13
    • 0032080772 scopus 로고    scopus 로고
    • Activation of plant retrotransposons under stress conditions
    • 10.1016/S1360-1385(98)01232-1
    • Activation of plant retrotransposons under stress conditions. M Grandbastien, Trends in Plant Science 1998 3 181 187 10.1016/S1360-1385(98) 01232-1
    • (1998) Trends in Plant Science , vol.3 , pp. 181-187
    • Grandbastien, M.1
  • 14
    • 0034612315 scopus 로고    scopus 로고
    • Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence
    • 10823912 10.1073/pnas.110587497
    • Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. R Kalendar J Tanskanen S Immonen E Nevo AH Schulman, Proc Natl Acad Sci USA 2000 97 6603 6607 10823912 10.1073/pnas.110587497
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6603-6607
    • Kalendar, R.1    Tanskanen, J.2    Immonen, S.3    Nevo, E.4    Schulman, A.H.5
  • 15
    • 0034755086 scopus 로고    scopus 로고
    • The mobility of the tobacco Tnt1 retrotransposon correlates with its transcriptional activation by fungal factors
    • 10.1046/j.1365-313X.2001.01141.x 11722759
    • The mobility of the tobacco Tnt1 retrotransposon correlates with its transcriptional activation by fungal factors. D Melayah E Bonnivard B Chalhoub C Audeon MA Grandbastien, Plant J 2001 28 159 168 10.1046/j.1365-313X.2001.01141. x 11722759
    • (2001) Plant J , vol.28 , pp. 159-168
    • Melayah, D.1    Bonnivard, E.2    Chalhoub, B.3    Audeon, C.4    Grandbastien, M.A.5
  • 16
    • 0000637348 scopus 로고    scopus 로고
    • Do Plants Have a One-Way Ticket to Genomic Obesity?
    • 12237393 10.1105/tpc.9.9.1509
    • Do Plants Have a One-Way Ticket to Genomic Obesity? JL Bennetzen EA Kellogg, Plant Cell 1997 9 1509 1514 12237393 10.1105/tpc.9.9.1509
    • (1997) Plant Cell , vol.9 , pp. 1509-1514
    • Bennetzen, J.L.1    Kellogg, E.A.2
  • 17
    • 19544376410 scopus 로고    scopus 로고
    • The C-value enigma in plants and animals: A review of parallels and an appeal for partnership
    • 10.1093/aob/mci009 15596463
    • The C-value enigma in plants and animals: a review of parallels and an appeal for partnership. TR Gregory, Ann Bot (Lond) 2005 95 133 146 10.1093/aob/mci009 15596463
    • (2005) Ann Bot (Lond) , vol.95 , pp. 133-146
    • Gregory, T.R.1
  • 18
    • 43049159700 scopus 로고    scopus 로고
    • Repeated big bangs and the expanding universe: Directionality in plant genome size evolution
    • 10.1016/j.plantsci.2008.03.015
    • Repeated big bangs and the expanding universe: Directionality in plant genome size evolution. JS Hawkins CE Grover JF Wendel, Plant Science 2008 174 557 562 10.1016/j.plantsci.2008.03.015
    • (2008) Plant Science , vol.174 , pp. 557-562
    • Hawkins, J.S.1    Grover, C.E.2    Wendel, J.F.3
  • 19
    • 0037387430 scopus 로고    scopus 로고
    • Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L
    • 10.1093/molbev/msg055 12654934
    • Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L. C Vitte O Panaud, Mol Biol Evol 2003 20 528 540 10.1093/molbev/msg055 12654934
    • (2003) Mol Biol Evol , vol.20 , pp. 528-540
    • Vitte, C.1    Panaud, O.2
  • 20
    • 33749522239 scopus 로고    scopus 로고
    • Genetics: Junk DNA as an evolutionary force
    • 10.1038/443521a 17024082
    • Genetics: junk DNA as an evolutionary force. C Biémont C Vieira, Nature 2006 443 521 524 10.1038/443521a 17024082
    • (2006) Nature , vol.443 , pp. 521-524
    • Biémont, C.1    Vieira, C.2
  • 21
    • 42549094998 scopus 로고    scopus 로고
    • Selection on major components of angiosperm genomes
    • 10.1126/science.1153586 18436777
    • Selection on major components of angiosperm genomes. BS Gaut J Ross-Ibarra, Science 2008 320 484 486 10.1126/science.1153586 18436777
    • (2008) Science , vol.320 , pp. 484-486
    • Gaut, B.S.1    Ross-Ibarra, J.2
  • 22
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: Drivers of genome evolution
    • 10.1126/science.1089670 15016989
    • Mobile elements: drivers of genome evolution. HH Kazazian, Science 2004 303 1626 1632 10.1126/science.1089670 15016989
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian, H.H.1
  • 23
    • 0030860770 scopus 로고    scopus 로고
    • Transposable elements as sources of variation in animals and plants
    • 9223252 10.1073/pnas.94.15.7704
    • Transposable elements as sources of variation in animals and plants. MG Kidwell D Lisch, Proc Natl Acad Sci USA 1997 94 7704 7711 9223252 10.1073/pnas.94.15.7704
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 7704-7711
    • Kidwell, M.G.1    Lisch, D.2
  • 24
    • 0141561907 scopus 로고    scopus 로고
    • Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
    • 10.1016/j.tig.2003.08.004 14550626
    • Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions. LN van de Lagemaat J Landry DL Mager P Medstrand, Trends Genet 2003 19 530 536 10.1016/j.tig.2003.08.004 14550626
    • (2003) Trends Genet , vol.19 , pp. 530-536
    • De Van N., L.L.1    Landry, J.2    Mager, D.L.3    Medstrand, P.4
  • 26
    • 40749151565 scopus 로고    scopus 로고
    • Large genomes among caridean shrimp
    • 10.1139/G07-108 18356950
    • Large genomes among caridean shrimp. DJ Rees C Belzile H Glemet F Dufresne, Genome 2008 51 159 163 10.1139/G07-108 18356950
    • (2008) Genome , vol.51 , pp. 159-163
    • Rees, D.J.1    Belzile, C.2    Glemet, H.3    Dufresne, F.4
  • 27
    • 44149128156 scopus 로고    scopus 로고
    • Widespread occurence of mariner transposons in coastal crabs
    • 10.1016/j.ympev.2008.03.029 18455443
    • Widespread occurence of mariner transposons in coastal crabs. Q Bui N Casse V Leignel V Nicolas B Chénais, Mol Phylogenet Evol 2008 47 1181 1189 10.1016/j.ympev.2008.03.029 18455443
    • (2008) Mol Phylogenet Evol , vol.47 , pp. 1181-1189
    • Bui, Q.1    Casse, N.2    Leignel, V.3    Nicolas, V.4    Chénais, B.5
  • 28
    • 47349101913 scopus 로고    scopus 로고
    • Evidence of multiple retrotransposons in two litopenaeid species
    • 10.1111/j.1365-2052.2008.01739.x 18557973
    • Evidence of multiple retrotransposons in two litopenaeid species. SE Hizer WG Tamulis LM Robertson DK Garcia, Anim Genet 2008 39 363 373 10.1111/j.1365-2052.2008.01739.x 18557973
    • (2008) Anim Genet , vol.39 , pp. 363-373
    • Hizer, S.E.1    Tamulis, W.G.2    Robertson, L.M.3    Garcia, D.K.4
  • 29
    • 33750497441 scopus 로고    scopus 로고
    • Isolation and Mapping of Telomeric Pentanucleotide (TAACC)n Repeats of the Pacific Whiteleg Shrimp, Penaeus vannamei, Using Fluorescence in Situ Hybridization
    • 10.1007/s10126-005-6031-z 16729213
    • Isolation and Mapping of Telomeric Pentanucleotide (TAACC)n Repeats of the Pacific Whiteleg Shrimp, Penaeus vannamei, Using Fluorescence In Situ Hybridization. A Alcivar-Warren D Meehan-Meola Y Wang X Guo L Zhou J Xiang S Moss S Arce W Warren Z Xu K Bell, Marine Biotechnology 2006 8 467 480 10.1007/s10126-005-6031-z 16729213
    • (2006) Marine Biotechnology , vol.8 , pp. 467-480
    • Alcivar-Warren, A.1    Meehan-Meola, D.2    Wang, Y.3    Guo, X.4    Zhou, L.5    Xiang, J.6    Moss, S.7    Arce, S.8    Warren, W.9    Xu, Z.10    Bell, K.11
  • 30
    • 34250644333 scopus 로고    scopus 로고
    • Molecular characterization and phylogenetic position of a new mariner-like element in the coastal crab, Pachygrapsus marmoratus
    • 10.1016/j.gene.2007.03.004 17490833
    • Molecular characterization and phylogenetic position of a new mariner-like element in the coastal crab, Pachygrapsus marmoratus. Q Bui L Delaurière N Casse V Nicolas M Laulier B Chénais, Gene 2007 396 248 256 10.1016/j.gene.2007.03.004 17490833
    • (2007) Gene , vol.396 , pp. 248-256
    • Bui, Q.1    Delaurière, L.2    Casse, N.3    Nicolas, V.4    Laulier, M.5    Chénais, B.6
  • 31
    • 11944269541 scopus 로고    scopus 로고
    • Mariner, a mobile DNA transposon in the genome of several hydrothermal invertebrates
    • Mariner, a mobile DNA transposon in the genome of several hydrothermal invertebrates. N Casse E Pradier C Loiseau Y Bigot M Laulier, Inter Ridge News 2000 9 15 17
    • (2000) Inter Ridge News , vol.9 , pp. 15-17
    • Casse, N.1    Pradier, E.2    Loiseau, C.3    Bigot, Y.4    Laulier, M.5
  • 32
    • 33745943979 scopus 로고    scopus 로고
    • Species sympatry and horizontal transfers of Mariner transposons in marine crustacean genomes
    • 10.1016/j.ympev.2006.02.005 16690328
    • Species sympatry and horizontal transfers of Mariner transposons in marine crustacean genomes. N Casse QT Bui V Nicolas S Renault Y Bigot M Laulier, Mol Phylogenet Evol 2006 40 609 619 10.1016/j.ympev.2006.02.005 16690328
    • (2006) Mol Phylogenet Evol , vol.40 , pp. 609-619
    • Casse, N.1    Bui, Q.T.2    Nicolas, V.3    Renault, S.4    Bigot, Y.5    Laulier, M.6
  • 33
    • 34548852199 scopus 로고    scopus 로고
    • Stress-induced gene expression profiling in the black tiger shrimp Penaeus monodon
    • 10.1152/physiolgenomics.00068.2007 17566080
    • Stress-induced gene expression profiling in the black tiger shrimp Penaeus monodon. E de la Vega MR Hall KJ Wilson A Reverter RG Woods BM Degnan, Physiol Genomics 2007 31 126 138 10.1152/physiolgenomics.00068.2007 17566080
    • (2007) Physiol Genomics , vol.31 , pp. 126-138
    • De La Vega, E.1    Hall, M.R.2    Wilson, K.J.3    Reverter, A.4    Woods, R.G.5    Degnan, B.M.6
  • 34
    • 34548487517 scopus 로고    scopus 로고
    • Differential expression of immune-related genes and transposable elements in black tiger shrimp (Penaeus monodon) exposed to a range of environmental stressors
    • 10.1016/j.fsi.2007.05.001 17613247
    • Differential expression of immune-related genes and transposable elements in black tiger shrimp (Penaeus monodon) exposed to a range of environmental stressors. E de la Vega BM Degnan MR Hall KJ Wilson, Fish Shellfish Immunol 2007 23 1072 1088 10.1016/j.fsi.2007.05.001 17613247
    • (2007) Fish Shellfish Immunol , vol.23 , pp. 1072-1088
    • De La Vega, E.1    Degnan, B.M.2    Hall, M.R.3    Wilson, K.J.4
  • 35
    • 11944262609 scopus 로고    scopus 로고
    • The GC-rich transposon Bytmar1 from the deep-sea hydrothermal crab, Bythograea thermydron, may encode three transposase isoforms from a single ORF
    • 10.1007/s00239-004-2665-0 15599507
    • The GC-rich transposon Bytmar1 from the deep-sea hydrothermal crab, Bythograea thermydron, may encode three transposase isoforms from a single ORF. N Halaimia-Toumi N Casse MV Demattei S Renault E Pradier Y Bigot M Laulier, J Mol Evol 2004 59 747 760 10.1007/s00239-004-2665-0 15599507
    • (2004) J Mol Evol , vol.59 , pp. 747-760
    • Halaimia-Toumi, N.1    Casse, N.2    Demattei, M.V.3    Renault, S.4    Pradier, E.5    Bigot, Y.6    Laulier, M.7
  • 36
    • 36949010080 scopus 로고    scopus 로고
    • GalEa retrotransposons from galatheid squat lobsters (Decapoda, Anomura) define a new clade of Ty1/copia-like elements restricted to aquatic species
    • 10.1007/s00438-007-0295-0 17929059
    • GalEa retrotransposons from galatheid squat lobsters (Decapoda, Anomura) define a new clade of Ty1/copia-like elements restricted to aquatic species. Y Terrat E Bonnivard D Higuet, Mol Genet Genomics 2008 279 63 73 10.1007/s00438-007-0295-0 17929059
    • (2008) Mol Genet Genomics , vol.279 , pp. 63-73
    • Terrat, Y.1    Bonnivard, E.2    Higuet, D.3
  • 37
    • 30544451181 scopus 로고    scopus 로고
    • The VIPER elements of trypanosomes constitute a novel group of tyrosine recombinase-enconding retrotransposons
    • 10.1016/j.molbiopara.2005.10.002 16297462
    • The VIPER elements of trypanosomes constitute a novel group of tyrosine recombinase-enconding retrotransposons. HA Lorenzi G Robledo MJ Levin, Mol Biochem Parasitol 2006 145 184 194 10.1016/j.molbiopara.2005.10.002 16297462
    • (2006) Mol Biochem Parasitol , vol.145 , pp. 184-194
    • Lorenzi, H.A.1    Robledo, G.2    Levin, M.J.3
  • 39
    • 43049094016 scopus 로고    scopus 로고
    • The diversity of retrotransposons and the properties of their reverse transcriptases
    • 10.1016/j.virusres.2007.12.010 18261821
    • The diversity of retrotransposons and the properties of their reverse transcriptases. TH Eickbush VK Jamburuthugoda, Virus Res 2008 134 221 234 10.1016/j.virusres.2007.12.010 18261821
    • (2008) Virus Res , vol.134 , pp. 221-234
    • Eickbush, T.H.1    Jamburuthugoda, V.K.2
  • 41
    • 23844559179 scopus 로고    scopus 로고
    • DIRS-1 and the other tyrosine recombinase retrotransposons
    • 10.1159/000084991 16093711
    • DIRS-1 and the other tyrosine recombinase retrotransposons. RTM Poulter TJD Goodwin, Cytogenet Genome Res 2005 110 575 588 10.1159/000084991 16093711
    • (2005) Cytogenet Genome Res , vol.110 , pp. 575-588
    • Poulter, R.T.M.1    Goodwin, T.J.D.2
  • 42
    • 51649096656 scopus 로고    scopus 로고
    • Phylogenetic profiles reveal evolutionary relationships within the "twilight zone" of sequence similarity
    • 18765810 10.1073/pnas.0803860105
    • Phylogenetic profiles reveal evolutionary relationships within the "twilight zone" of sequence similarity. GS Chang Y Hong KD Ko G Bhardwaj EC Holmes RL Patterson DB van Rossum, Proc Natl Acad Sci USA 2008 105 13474 13479 18765810 10.1073/pnas.0803860105
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 13474-13479
    • Chang, G.S.1    Hong, Y.2    Ko, K.D.3    Bhardwaj, G.4    Holmes, E.C.5    Patterson, R.L.6    Van Rossum, D.B.7
  • 44
    • 0026594519 scopus 로고
    • Unusual features of the retroid element PAT from the nematode Panagrellus redivivus
    • 1315955 10.1093/nar/20.7.1623
    • Unusual features of the retroid element PAT from the nematode Panagrellus redivivus. Y de Chastonay H Felder C Link P Aeby H Tobler F Muller, Nucl Acids Res 1992 20 1623 1628 1315955 10.1093/nar/20.7.1623
    • (1992) Nucl Acids Res , vol.20 , pp. 1623-1628
    • De Chastonay, Y.1    Felder, H.2    Link, C.3    Aeby, P.4    Tobler, H.5    Muller, F.6
  • 45
    • 0036963683 scopus 로고    scopus 로고
    • kangaroo, a mobile element from Volvox carteri, is a member of a newly recognized third class of retrotransposons
    • kangaroo, a mobile element from Volvox carteri, is a member of a newly recognized third class of retrotransposons. L Duncan K Bouckaert F Yeh DL Kirk, Genetics 2002 162 1617 1630 12524337 (Pubitemid 36114651)
    • (2002) Genetics , vol.162 , Issue.4 , pp. 1617-1630
    • Duncan, L.1    Bouckaert, K.2    Yeh, F.3    Kirk, D.L.4
  • 48
    • 4544327266 scopus 로고    scopus 로고
    • DIRS retroelements in arthropods: Identification of the recently active TcDirs1 element in the red flour beetle Tribolium castaneum
    • 10.1007/s00438-004-1028-2 15221458
    • DIRS retroelements in arthropods: identification of the recently active TcDirs1 element in the red flour beetle Tribolium castaneum. TJD Goodwin RTM Poulter MD Lorenzen RW Beeman, Mol Genet Genomics 2004 272 47 56 10.1007/s00438-004-1028-2 15221458
    • (2004) Mol Genet Genomics , vol.272 , pp. 47-56
    • Goodwin, T.J.D.1    Poulter, R.T.M.2    Lorenzen, M.D.3    Beeman, R.W.4
  • 49
    • 1842609646 scopus 로고    scopus 로고
    • A new group of tyrosine recombinase-encoding retrotransposons
    • 10.1093/molbev/msh072 14963102
    • A new group of tyrosine recombinase-encoding retrotransposons. TJD Goodwin RTM Poulter, Mol Biol Evol 2004 21 746 759 10.1093/molbev/msh072 14963102
    • (2004) Mol Biol Evol , vol.21 , pp. 746-759
    • Goodwin, T.J.D.1    Poulter, R.T.M.2
  • 50
    • 66149183350 scopus 로고    scopus 로고
    • Accessed October 2008
    • Retrobase. RTM Poulter, http://biocadmin.otago.ac.nz/fmi/xsl/retrobase/ home.xsl Accessed October 2008
    • Retrobase
    • Poulter, R.T.M.1
  • 52
    • 0020629266 scopus 로고
    • A repetitive Dictyostelium gene family that is induced during differentiation and by heat shock
    • 10.1016/0092-8674(83)90557-3 6194894
    • A repetitive Dictyostelium gene family that is induced during differentiation and by heat shock. C Zuker J Cappello RL Chisholm HF Lodish, Cell 1983 34 997 1005 10.1016/0092-8674(83)90557-3 6194894
    • (1983) Cell , vol.34 , pp. 997-1005
    • Zuker, C.1    Cappello, J.2    Chisholm, R.L.3    Lodish, H.F.4
  • 54
    • 6344241315 scopus 로고    scopus 로고
    • Retroelement dynamics and a novel type of chordate retrovirus-like element in the miniature genome of the tunicate Oikopleura dioica
    • 10.1093/molbev/msh207 15254255
    • Retroelement dynamics and a novel type of chordate retrovirus-like element in the miniature genome of the tunicate Oikopleura dioica. J Volff H Lehrach R Reinhardt D Chourrout, Mol Biol Evol 2004 21 2022 2033 10.1093/molbev/msh207 15254255
    • (2004) Mol Biol Evol , vol.21 , pp. 2022-2033
    • Volff, J.1    Lehrach, H.2    Reinhardt, R.3    Chourrout, D.4
  • 55
    • 0030451271 scopus 로고    scopus 로고
    • Prt1 an unusual retrotransposon like sequence in the fungus Phycomyces blakesleeanus
    • DOI 10.1007/s004380050328
    • Prt1, an unusual retrotransposon-like sequence in the fungus Phycomyces blakesleeanus. VL Ruiz-Pérez FJ Murillo S Torres-Martínez, Mol Gen Genet 1996 253 324 333 9003319 (Pubitemid 27023190)
    • (1996) Molecular and General Genetics , vol.253 , Issue.3 , pp. 324-333
    • Ruiz-Perez, V.L.1    Murillo, F.J.2    Torres-Martinez, S.3
  • 57
    • 34347381116 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families
    • 17556529 10.1101/gr.6214107
    • Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families. T Wicker B Keller, Genome Res 2007 17 1072 1081 17556529 10.1101/gr.6214107
    • (2007) Genome Res , vol.17 , pp. 1072-1081
    • Wicker, T.1    Keller, B.2
  • 58
    • 51349167797 scopus 로고    scopus 로고
    • LTR retrotransposon landscape in Medicago truncatula: More rapid removal than in rice
    • 18691433 10.1186/1471-2164-9-382
    • LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice. H Wang J Liu, BMC Genomics 2008 9 382 18691433 10.1186/1471-2164-9-382
    • (2008) BMC Genomics , vol.9 , pp. 382
    • Wang, H.1    Liu, J.2
  • 59
    • 34247877564 scopus 로고    scopus 로고
    • De novo identification of LTR retrotransposons in eukaryotic genomes
    • 17407597 10.1186/1471-2164-8-90
    • De novo identification of LTR retrotransposons in eukaryotic genomes. M Rho J Choi S Kim M Lynch H Tang, BMC Genomics 2007 8 90 17407597 10.1186/1471-2164-8-90
    • (2007) BMC Genomics , vol.8 , pp. 90
    • Rho, M.1    Choi, J.2    Kim, S.3    Lynch, M.4    Tang, H.5
  • 61
    • 0021236352 scopus 로고
    • Repetitive Dictyostelium heat-shock promotor functions in Saccharomyces cerevisiae
    • Repetitive Dictyostelium heat-shock promotor functions in Saccharomyces cerevisiae. J Cappello C Zuker HF Lodish, Mol Cell Biol 1984 4 591 598 6371492 (Pubitemid 14130354)
    • (1984) Molecular and Cellular Biology , vol.4 , Issue.4 , pp. 591-598
    • Cappello, J.1    Zuker, C.2    Lodish, H.F.3
  • 62
    • 0033217142 scopus 로고    scopus 로고
    • Miocene radiation of deep-sea hydrothermal vent shrimp (Caridea: Bresiliidae): evidence from mitochondrial cytochrome oxidase subunit i
    • 10.1006/mpev.1999.0642 10603254
    • Miocene radiation of deep-sea hydrothermal vent shrimp (Caridea: Bresiliidae): evidence from mitochondrial cytochrome oxidase subunit I. TM Shank MB Black KM Halanych RA Lutz RC Vrijenhoek, Mol Phylogenet Evol 1999 13 244 254 10.1006/mpev.1999.0642 10603254
    • (1999) Mol Phylogenet Evol , vol.13 , pp. 244-254
    • Shank, T.M.1    Black, M.B.2    Halanych, K.M.3    Lutz, R.A.4    Vrijenhoek, R.C.5
  • 63
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • 9396791 10.1093/nar/25.24.4876
    • The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins, Nucleic Acids Res 1997 25 4876 4882 9396791 10.1093/nar/25.24.4876
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 64
    • 0026516955 scopus 로고
    • Extreme heterogeneity of Ty1-copia group retrotransposons in plants
    • 1370976
    • Extreme heterogeneity of Ty1-copia group retrotransposons in plants. AJ Flavell DB Smith A Kumar, Mol Gen Genet 1992 231 233 242 1370976
    • (1992) Mol Gen Genet , vol.231 , pp. 233-242
    • Flavell, A.J.1    Smith, D.B.2    Kumar, A.3
  • 65
    • 0036383483 scopus 로고    scopus 로고
    • Characterization of transposable elements in the genome of rice (Oryza sativa L.) using Representational Difference Analysis (RDA)
    • 10.1007/s00438-002-0734-x 12242506
    • Characterization of transposable elements in the genome of rice (Oryza sativa L.) using Representational Difference Analysis (RDA). O Panaud C Vitte J Hivert S Muzlak J Talag D Brar A Sarr, Mol Genet Genomics 2002 268 113 121 10.1007/s00438-002-0734-x 12242506
    • (2002) Mol Genet Genomics , vol.268 , pp. 113-121
    • Panaud, O.1    Vitte, C.2    Hivert, J.3    Muzlak, S.4    Talag, J.5    Brar, D.6    Sarr, A.7
  • 66
    • 44949142842 scopus 로고    scopus 로고
    • Phylogeny of Decapoda using two nuclear protein-coding genes: Origin and evolution of the Reptantia
    • 10.1016/j.ympev.2008.04.009 18501643
    • Phylogeny of Decapoda using two nuclear protein-coding genes: origin and evolution of the Reptantia. LM Tsang KY Ma ST Ahyong T Chan KH Chu, Mol Phylogenet Evol 2008 48 359 368 10.1016/j.ympev.2008.04.009 18501643
    • (2008) Mol Phylogenet Evol , vol.48 , pp. 359-368
    • Tsang, L.M.1    Ma, K.Y.2    Ahyong, S.T.3    Chan, T.4    Chu, K.H.5
  • 67
    • 0025334962 scopus 로고
    • Large-scale isolation of plasmid DNA using cetyltrimethylammonium bromide
    • Large-scale isolation of plasmid DNA using cetyltrimethylammonium bromide. M Ishaq B Wolf C Ritter, Biotechniques 1990 9 19 24 2168186 (Pubitemid 20222352)
    • (1990) BioTechniques , vol.9 , Issue.1 , pp. 19-24
    • Ishaq, M.1    Wolf, B.2    Ritter, C.3
  • 68
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. TA Hall, Nucleic acids symposium series 1999 41 95 98
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 69
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092 17488738
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. K Tamura J Dudley M Nei S Kumar, Mol Biol Evol 2007 24 1596 1599 10.1093/molbev/msm092 17488738
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 70
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • 3447015
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees. N Saitou M Nei, Mol Biol Evol 1987 4 406 425 3447015
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 71
    • 0036790028 scopus 로고    scopus 로고
    • Evolutionary distance estimation under heterogeneous substitution pattern among lineages
    • 12270899
    • Evolutionary distance estimation under heterogeneous substitution pattern among lineages. K Tamura S Kumar, Mol Biol Evol 2002 19 1727 1736 12270899
    • (2002) Mol Biol Evol , vol.19 , pp. 1727-1736
    • Tamura, K.1    Kumar, S.2
  • 72
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. J Castresana, Mol Biol Evol 2000 17 540 552 10742046 (Pubitemid 30210700)
    • (2000) Molecular Biology and Evolution , vol.17 , Issue.4 , pp. 540-552
    • Castresana, J.1
  • 73
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520 14530136
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 696 704 10.1080/10635150390235520 14530136
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 74
    • 4444299144 scopus 로고    scopus 로고
    • TOPALi: Software for automatic identification of recombinant sequences within DNA multiple alignments
    • 10.1093/bioinformatics/bth155 14988107
    • TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments. I Milne F Wright G Rowe DF Marshall D Husmeier G McGuire, Bioinformatics 2004 20 1806 1807 10.1093/bioinformatics/bth155 14988107
    • (2004) Bioinformatics , vol.20 , pp. 1806-1807
    • Milne, I.1    Wright, F.2    Rowe, G.3    Marshall, D.F.4    Husmeier, D.5    McGuire, G.6
  • 75
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. S Whelan N Goldman, Mol Biol Evol 2001 18 691 699 11319253 (Pubitemid 32372940)
    • (2001) Molecular Biology and Evolution , vol.18 , Issue.5 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 76
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • 10.2307/2408678
    • Confidence limits on phylogenies: an approach using the bootstrap. J Felsenstein, Evolution 1985 39 783 791 10.2307/2408678
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.