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Volumn 10, Issue , 2009, Pages

An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in Domestic cattle

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CATTLE; CONTROLLED STUDY; DOMESTICATION; EFFECTIVE POPULATION SIZE; GENE AMPLIFICATION; GENE FREQUENCY; GENE SEGREGATION; GENETIC SELECTION; GENETIC VARIABILITY; GENOTYPE; HETEROZYGOSITY; INBREEDING; NONHUMAN; PHYLOGENY; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES DIVERSITY; ANIMAL; BREEDING; CLASSIFICATION; COMPUTER SIMULATION; DOMESTIC ANIMAL; FEMALE; GENETIC MARKER; GENETICS; GENOME; GENOMICS; MALE; METHODOLOGY; POPULATION DENSITY; WILD ANIMAL;

EID: 65649136230     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-181     Document Type: Article
Times cited : (73)

References (37)
  • 1
    • 0030844231 scopus 로고    scopus 로고
    • Nucleotide sequence evolution at the kappa-casein locus: Evidence for positive selection within the family Bovidae
    • 1208352 9409842
    • Ward TJ Honeycutt RL Derr JN Nucleotide sequence evolution at the kappa-casein locus: Evidence for positive selection within the family Bovidae Genetics 1997, 147(4):1863-72. 1208352 9409842
    • (1997) Genetics , vol.147 , Issue.4 , pp. 1863-1872
    • Ward, T.J.1    Honeycutt, R.L.2    Derr, J.N.3
  • 5
    • 1542350622 scopus 로고    scopus 로고
    • Domestic-animal genomics: Deciphering the genetics of complex traits
    • 10.1038/nrg1294 14970822
    • Andersson L Georges M Domestic-animal genomics: Deciphering the genetics of complex traits Nat Rev Genet 2004, 5(3):202-12. 10.1038/nrg1294 14970822
    • (2004) Nat Rev Genet , vol.5 , Issue.3 , pp. 202-212
    • Andersson, L.1    Georges, M.2
  • 7
    • 23344447274 scopus 로고    scopus 로고
    • A genomics approach to the detection of positive selection in cattle: Adaptive evolution of the T-cell and natural killer cell-surface protein CD2
    • 1451189 15802510 10.1534/genetics.104.039040
    • Lynn DJ Freeman AR Murray C Bradley DG A genomics approach to the detection of positive selection in cattle: Adaptive evolution of the T-cell and natural killer cell-surface protein CD2 Genetics 2005, 170(3):1189-96. 1451189 15802510 10.1534/genetics.104.039040
    • (2005) Genetics , vol.170 , Issue.3 , pp. 1189-1196
    • Lynn, D.J.1    Freeman, A.R.2    Murray, C.3    Bradley, D.G.4
  • 8
    • 28844443820 scopus 로고    scopus 로고
    • Selective sweep mapping of genes with large phenotypic effects
    • 1356119 16339379 10.1101/gr.4374505
    • Pollinger JP Bustamante CD Fledel-Alon A Schmutz S Gray MM Wayne RK Selective sweep mapping of genes with large phenotypic effects Genome Res 2005, 15(12):1809-19. 1356119 16339379 10.1101/gr.4374505
    • (2005) Genome Res , vol.15 , Issue.12 , pp. 1809-1819
    • Pollinger, J.P.1    Bustamante, C.D.2    Fledel-Alon, A.3    Schmutz, S.4    Gray, M.M.5    Wayne, R.K.6
  • 9
    • 33746237715 scopus 로고    scopus 로고
    • Analysis of population differentiation in North Eurasian cattle (Bos taurus) using single nucleotide polymorphisms in three genes associated with production traits
    • 10.1111/j.1365-2052.2006.01479.x 16879354
    • Li MH Adamowicz T Switonski M Ammosov I Ivanova Z Kiselyova T Popov R Kantanen J Analysis of population differentiation in North Eurasian cattle (Bos taurus) using single nucleotide polymorphisms in three genes associated with production traits Anim Genet 2006, 37(4):390-2. 10.1111/ j.1365-2052.2006.01479.x 16879354
    • (2006) Anim Genet , vol.37 , Issue.4 , pp. 390-392
    • Li, M.H.1    Adamowicz, T.2    Switonski, M.3    Ammosov, I.4    Ivanova, Z.5    Kiselyova, T.6    Popov, R.7    Kantanen, J.8
  • 11
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signatures of natural selection
    • 187574 12466284 10.1101/gr.631202
    • Akey JM Zhang G Zhang K Jin L Shriver MD Interrogating a high-density SNP map for signatures of natural selection Genome Res 2002, 12(12):1805-14. 187574 12466284 10.1101/gr.631202
    • (2002) Genome Res , vol.12 , Issue.12 , pp. 1805-1814
    • Akey, J.M.1    Zhang, G.2    Zhang, K.3    Jin, L.4    Shriver, M.D.5
  • 13
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • 1203831 2513255
    • Tajima F Statistical method for testing the neutral mutation hypothesis by DNA polymorphism Genetics 1989, 123(3):585-95. 1203831 2513255
    • (1989) Genetics , vol.123 , Issue.3 , pp. 585-595
    • Tajima, F.1
  • 14
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • 1461156 10880498
    • Fay JC Wu CI Hitchhiking under positive Darwinian selection Genetics 2000, 155(3):1405-13. 1461156 10880498
    • (2000) Genetics , vol.155 , Issue.3 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.I.2
  • 15
    • 0032869219 scopus 로고    scopus 로고
    • Within- and between-species DNA sequence variation and the 'footprint' of natural selection
    • 10.1016/S0378-1119(99)00294-2 10570982
    • Akashi H Within- and between-species DNA sequence variation and the 'footprint' of natural selection Gene 1999, 238(1):39-51. 10.1016/ S0378-1119(99)00294-2 10570982
    • (1999) Gene , vol.238 , Issue.1 , pp. 39-51
    • Akashi, H.1
  • 16
    • 0036196885 scopus 로고    scopus 로고
    • The signature of positive selection at randomly chosen loci
    • 1462030 11901132
    • Przeworski M The signature of positive selection at randomly chosen loci Genetics 2002, 160(3):1179-89. 1462030 11901132
    • (2002) Genetics , vol.160 , Issue.3 , pp. 1179-1189
    • Przeworski, M.1
  • 18
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • 1202167 6628982
    • Tajima F Evolutionary relationship of DNA sequences in finite populations Genetics 1983, 105(2):437-60. 1202167 6628982
    • (1983) Genetics , vol.105 , Issue.2 , pp. 437-460
    • Tajima, F.1
  • 20
    • 65649140354 scopus 로고    scopus 로고
    • Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae)
    • 10.1186/1471-2164-10-177 19393045
    • MacEachern S McEwan J Goddard M Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae) BMC Genomics 2009, 10:177. 10.1186/1471-2164-10-177 19393045
    • (2009) BMC Genomics , vol.10 , pp. 177
    • MacEachern, S.1    McEwan, J.2    Goddard, M.3
  • 23
    • 0032221242 scopus 로고    scopus 로고
    • Genetics and Domestic Cattle Origins
    • 10.1002/(SICI)1520-6505(1998)6:3<79::AID-EVAN2>3.0.CO;2-R
    • Bradley DG Loftus RT Cunningham P Machugh DE Genetics and Domestic Cattle Origins Evolutionary Anthropology 1998, 6(3):79-86. 10.1002/ (SICI)1520-6505(1998)6:3<79::AID-EVAN2>3.0.CO;2-R
    • (1998) Evolutionary Anthropology , vol.6 , Issue.3 , pp. 79-86
    • Bradley, D.G.1    Loftus, R.T.2    Cunningham, P.3    Machugh, D.E.4
  • 24
    • 0037043719 scopus 로고    scopus 로고
    • Evolution, consequences and future of plant and animal domestication
    • 10.1038/nature01019 12167878
    • Diamond J Evolution, consequences and future of plant and animal domestication Nature 2002, 418(6898):700-7. 10.1038/nature01019 12167878
    • (2002) Nature , vol.418 , Issue.6898 , pp. 700-707
    • Diamond, J.1
  • 25
    • 0242354083 scopus 로고    scopus 로고
    • DNA markers reveal the complexity of livestock domestication
    • 10.1038/nrg1203 14634637
    • Bruford MW Bradley DG Luikart G DNA markers reveal the complexity of livestock domestication Nat Rev Genet 2003, 4:900-910. 10.1038/nrg1203 14634637
    • (2003) Nat Rev Genet , vol.4 , pp. 900-910
    • Bruford, M.W.1    Bradley, D.G.2    Luikart, G.3
  • 26
    • 8844227502 scopus 로고    scopus 로고
    • Population History and Natural Selection Shape Patterns of Genetic Variation in 132 Genes
    • 10.1371/journal.pbio.0020286
    • Akey JM Eberle MA Rieder MJ Carlson CS Shriver MD Nickerson DA Kruglyak L Population History and Natural Selection Shape Patterns of Genetic Variation in 132 Genes PLOS Biol 2004, 2(10):1591-1599. 10.1371/ journal.pbio.0020286
    • (2004) PLOS Biol , vol.2 , Issue.10 , pp. 1591-1599
    • Akey, J.M.1    Eberle, M.A.2    Rieder, M.J.3    Carlson, C.S.4    Shriver, M.D.5    Nickerson, D.A.6    Kruglyak, L.7
  • 27
    • 65649131943 scopus 로고    scopus 로고
    • Molecular evolution of the Bovini tribe (Bovidae, Bovinae): Is there evidence of rapid evolution or reduced selective constraint in Domestic cattle?
    • 10.1186/1471-2164-10-179
    • MacEachern S McEwan J McCulloch A Mather A Savin K Goddard M Molecular evolution of the Bovini tribe (Bovidae, Bovinae): Is there evidence of rapid evolution or reduced selective constraint in Domestic cattle? BMC Genomics 2009, 10:179. 10.1186/1471-2164-10-179 19393048
    • (2009) BMC Genomics , vol.10 , pp. 179
    • MacEachern, S.1    McEwan, J.2    McCulloch, A.3    Mather, A.4    Savin, K.5    Goddard, M.6
  • 28
    • 0037154209 scopus 로고    scopus 로고
    • Mutation rates in mammalian genomes
    • 117386 11792858 10.1073/pnas.022629899
    • Kumar S Subramanian S Mutation rates in mammalian genomes Proc Natl Acad Sci USA 2002, 99(2):803-8. 117386 11792858 10.1073/pnas.022629899
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.2 , pp. 803-808
    • Kumar, S.1    Subramanian, S.2
  • 29
    • 0034933293 scopus 로고    scopus 로고
    • Differential introgression of uniparentally inherited markers in bison populations with hybrid ancestries
    • 10.1046/j.1365-2052.2001.00736.x 11421943
    • Ward TJ Skow LC Gallagher DS Schnabel RD Nall CA Kolenda CE Davis SK Taylor JF Derr JN Differential introgression of uniparentally inherited markers in bison populations with hybrid ancestries Anim Genet 2001, 32(2):89-91. 10.1046/j.1365-2052.2001.00736.x 11421943
    • (2001) Anim Genet , vol.32 , Issue.2 , pp. 89-91
    • Ward, T.J.1    Skow, L.C.2    Gallagher, D.S.3    Schnabel, R.D.4    Nall, C.A.5    Kolenda, C.E.6    Davis, S.K.7    Taylor, J.F.8    Derr, J.N.9
  • 30
    • 21244442314 scopus 로고    scopus 로고
    • Conservation genomics: Disequilibrium mapping of domestic cattle chromosomal segments in North American bison populations
    • 10.1111/j.1365-294x.2005.02591.x 15969719
    • Halbert ND Ward TJ Schnabel RD Taylor JF Derr JN Conservation genomics: disequilibrium mapping of domestic cattle chromosomal segments in North American bison populations Mol Ecol 2005, 14(8):2343-62. 10.1111/ j.1365-294x.2005.02591.x 15969719
    • (2005) Mol Ecol , vol.14 , pp. 2343-2362
    • Halbert, N.D.1    Ward, T.J.2    Schnabel, R.D.3    Taylor, J.F.4    Derr, J.N.5
  • 31
    • 0029415835 scopus 로고
    • Divergence time and population size in the lineage leading to modern humans
    • 10.1006/tpbi.1995.1026 7482371
    • Takahata N Satta Y Klein J Divergence time and population size in the lineage leading to modern humans Theor Popul Biol 1995, 48(2):198-221. 10.1006/tpbi.1995.1026 7482371
    • (1995) Theor Popul Biol , vol.48 , Issue.2 , pp. 198-221
    • Takahata, N.1    Satta, Y.2    Klein, J.3
  • 33
    • 52049096371 scopus 로고    scopus 로고
    • Linkage disequilibrium and persistence of phase in Holstein Friesian, Jersey and Angus cattle
    • 2475750
    • de Roos APW Hayes BJ Spelman RJ Goddard ME Linkage disequilibrium and persistence of phase in Holstein Friesian, Jersey and Angus cattle Genetics 2008 179 1503 1512 2475750 18622038 10.1534/genetics.107.084301
    • (2008) Genetics , vol.179 , pp. 1503-1512
    • de Roos, A.P.W.1    Hayes, B.J.2    Spelman, R.J.3    Goddard, M.E.4
  • 34
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • 187518 11932250
    • Kent WJ BLAT - the BLAST-like alignment tool Genome Res 2002, 12(4):656-64. 187518 11932250
    • (2002) Genome Res , vol.12 , Issue.4 , pp. 656-664
    • Kent, W.J.1
  • 36
    • 0038781903 scopus 로고    scopus 로고
    • Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes
    • 430942 12727904 10.1101/gr.1152803
    • Subramanian S Kumar S Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes Genome Res 2003, 13(5):838-44. 430942 12727904 10.1101/gr.1152803
    • (2003) Genome Res , vol.13 , Issue.5 , pp. 838-844
    • Subramanian, S.1    Kumar, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.