-
1
-
-
0030844231
-
Nucleotide sequence evolution at the kappa-casein locus: Evidence for positive selection within the family Bovidae
-
1208352 9409842
-
Ward TJ Honeycutt RL Derr JN Nucleotide sequence evolution at the kappa-casein locus: Evidence for positive selection within the family Bovidae Genetics 1997, 147(4):1863-72. 1208352 9409842
-
(1997)
Genetics
, vol.147
, Issue.4
, pp. 1863-1872
-
-
Ward, T.J.1
Honeycutt, R.L.2
Derr, J.N.3
-
2
-
-
0345257771
-
Gene-culture coevolution between cattle milk protein genes and human lactase genes
-
10.1038/ng1263 14634648
-
Beja-Pereira A Luikart G England PR Bradley DG Jann OC Bertorelle G Chamberlain AT Nunes TP Metodiev S Ferrand N Erhardt G Gene-culture coevolution between cattle milk protein genes and human lactase genes Nat Genet 2003, 35(4):311-3. 10.1038/ng1263 14634648
-
(2003)
Nat Genet
, vol.35
, Issue.4
, pp. 311-313
-
-
Beja-Pereira, A.1
Luikart, G.2
England, P.R.3
Bradley, D.G.4
Jann, O.C.5
Bertorelle, G.6
Chamberlain, A.T.7
Nunes, T.P.8
Metodiev, S.9
Ferrand, N.10
Erhardt, G.11
-
3
-
-
0242363235
-
A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig
-
10.1038/nature02064 14574411
-
Van Laere AS Nguyen M Braunschweig M Nezer C Collette C Moreau L Archibald AL Haley CS Buys N Tally M Andersson G Georges M Andersson L A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig Nature 2003, 425(6960):832-6. 10.1038/nature02064 14574411
-
(2003)
Nature
, vol.425
, Issue.6960
, pp. 832-836
-
-
Van Laere, A.S.1
Nguyen, M.2
Braunschweig, M.3
Nezer, C.4
Collette, C.5
Moreau, L.6
Archibald, A.L.7
Haley, C.S.8
Buys, N.9
Tally, M.10
Andersson, G.11
Georges, M.12
Andersson, L.13
-
4
-
-
0038249092
-
Signatures of selection? Patterns of microsatellite diversity on a chromosome containing a selected locus
-
10.1038/sj.hdy.6800257 12714979
-
Wiener P Burton D Ajmone-Marsan P Dunner S Mommens G Nijman IJ Rodellar C Valentini A Williams JL Signatures of selection? Patterns of microsatellite diversity on a chromosome containing a selected locus Heredity 2003, 90(5):350-8. 10.1038/sj.hdy.6800257 12714979
-
(2003)
Heredity
, vol.90
, Issue.5
, pp. 350-358
-
-
Wiener, P.1
Burton, D.2
Ajmone-Marsan, P.3
Dunner, S.4
Mommens, G.5
Nijman, I.J.6
Rodellar, C.7
Valentini, A.8
Williams, J.L.9
-
5
-
-
1542350622
-
Domestic-animal genomics: Deciphering the genetics of complex traits
-
10.1038/nrg1294 14970822
-
Andersson L Georges M Domestic-animal genomics: Deciphering the genetics of complex traits Nat Rev Genet 2004, 5(3):202-12. 10.1038/nrg1294 14970822
-
(2004)
Nat Rev Genet
, vol.5
, Issue.3
, pp. 202-212
-
-
Andersson, L.1
Georges, M.2
-
6
-
-
22244468049
-
Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle
-
1172037 15998908 10.1101/gr.3806705
-
Cohen-Zinder M Seroussi E Larkin DM Loor JJ Everts-van der Wind A Lee JH Drackley JK Band MR Hernandez AG Shani M Lewin HA Weller JL Ron M Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle Genome Res 2005, 15(7):936-44. 1172037 15998908 10.1101/gr.3806705
-
(2005)
Genome Res
, vol.15
, Issue.7
, pp. 936-944
-
-
Cohen-Zinder, M.1
Seroussi, E.2
Larkin, D.M.3
Loor, J.J.4
Everts-van der Wind, A.5
Lee, J.H.6
Drackley, J.K.7
Band, M.R.8
Hernandez, A.G.9
Shani, M.10
Lewin, H.A.11
Weller, J.L.12
Ron, M.13
-
7
-
-
23344447274
-
A genomics approach to the detection of positive selection in cattle: Adaptive evolution of the T-cell and natural killer cell-surface protein CD2
-
1451189 15802510 10.1534/genetics.104.039040
-
Lynn DJ Freeman AR Murray C Bradley DG A genomics approach to the detection of positive selection in cattle: Adaptive evolution of the T-cell and natural killer cell-surface protein CD2 Genetics 2005, 170(3):1189-96. 1451189 15802510 10.1534/genetics.104.039040
-
(2005)
Genetics
, vol.170
, Issue.3
, pp. 1189-1196
-
-
Lynn, D.J.1
Freeman, A.R.2
Murray, C.3
Bradley, D.G.4
-
8
-
-
28844443820
-
Selective sweep mapping of genes with large phenotypic effects
-
1356119 16339379 10.1101/gr.4374505
-
Pollinger JP Bustamante CD Fledel-Alon A Schmutz S Gray MM Wayne RK Selective sweep mapping of genes with large phenotypic effects Genome Res 2005, 15(12):1809-19. 1356119 16339379 10.1101/gr.4374505
-
(2005)
Genome Res
, vol.15
, Issue.12
, pp. 1809-1819
-
-
Pollinger, J.P.1
Bustamante, C.D.2
Fledel-Alon, A.3
Schmutz, S.4
Gray, M.M.5
Wayne, R.K.6
-
9
-
-
33746237715
-
Analysis of population differentiation in North Eurasian cattle (Bos taurus) using single nucleotide polymorphisms in three genes associated with production traits
-
10.1111/j.1365-2052.2006.01479.x 16879354
-
Li MH Adamowicz T Switonski M Ammosov I Ivanova Z Kiselyova T Popov R Kantanen J Analysis of population differentiation in North Eurasian cattle (Bos taurus) using single nucleotide polymorphisms in three genes associated with production traits Anim Genet 2006, 37(4):390-2. 10.1111/ j.1365-2052.2006.01479.x 16879354
-
(2006)
Anim Genet
, vol.37
, Issue.4
, pp. 390-392
-
-
Li, M.H.1
Adamowicz, T.2
Switonski, M.3
Ammosov, I.4
Ivanova, Z.5
Kiselyova, T.6
Popov, R.7
Kantanen, J.8
-
10
-
-
41149180683
-
The origin of selection signatures on bovine chromosome six
-
10.1111/j.1365-2052.2007.01683.x 18241301
-
Hayes BJ Lien S Nilsen H Gro Olsen H Berg P MacEachern S Potter S Meuwissen THE The origin of selection signatures on bovine chromosome six Anim Genet 2008, 39(2):105-11. 10.1111/j.1365-2052.2007.01683.x 18241301
-
(2008)
Anim Genet
, vol.39
, Issue.2
, pp. 105-111
-
-
Hayes, B.J.1
Lien, S.2
Nilsen, H.3
Gro Olsen, H.4
Berg, P.5
MacEachern, S.6
Potter, S.7
Meuwissen, T.H.E.8
-
11
-
-
0036911353
-
Interrogating a high-density SNP map for signatures of natural selection
-
187574 12466284 10.1101/gr.631202
-
Akey JM Zhang G Zhang K Jin L Shriver MD Interrogating a high-density SNP map for signatures of natural selection Genome Res 2002, 12(12):1805-14. 187574 12466284 10.1101/gr.631202
-
(2002)
Genome Res
, vol.12
, Issue.12
, pp. 1805-1814
-
-
Akey, J.M.1
Zhang, G.2
Zhang, K.3
Jin, L.4
Shriver, M.D.5
-
13
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
1203831 2513255
-
Tajima F Statistical method for testing the neutral mutation hypothesis by DNA polymorphism Genetics 1989, 123(3):585-95. 1203831 2513255
-
(1989)
Genetics
, vol.123
, Issue.3
, pp. 585-595
-
-
Tajima, F.1
-
14
-
-
0033911640
-
Hitchhiking under positive Darwinian selection
-
1461156 10880498
-
Fay JC Wu CI Hitchhiking under positive Darwinian selection Genetics 2000, 155(3):1405-13. 1461156 10880498
-
(2000)
Genetics
, vol.155
, Issue.3
, pp. 1405-1413
-
-
Fay, J.C.1
Wu, C.I.2
-
15
-
-
0032869219
-
Within- and between-species DNA sequence variation and the 'footprint' of natural selection
-
10.1016/S0378-1119(99)00294-2 10570982
-
Akashi H Within- and between-species DNA sequence variation and the 'footprint' of natural selection Gene 1999, 238(1):39-51. 10.1016/ S0378-1119(99)00294-2 10570982
-
(1999)
Gene
, vol.238
, Issue.1
, pp. 39-51
-
-
Akashi, H.1
-
16
-
-
0036196885
-
The signature of positive selection at randomly chosen loci
-
1462030 11901132
-
Przeworski M The signature of positive selection at randomly chosen loci Genetics 2002, 160(3):1179-89. 1462030 11901132
-
(2002)
Genetics
, vol.160
, Issue.3
, pp. 1179-1189
-
-
Przeworski, M.1
-
17
-
-
33745121154
-
Positive natural selection in the human lineage
-
10.1126/science.1124309 16778047
-
Sabeti PC Schaffner SF Fry B Lohmueller J Varilly P Shamovsky O Palma A Mikkelsen TS Altshuler D Lander ES Positive natural selection in the human lineage Science 2006, 312(5780):1614-20. 10.1126/science.1124309 16778047
-
(2006)
Science
, vol.312
, Issue.5780
, pp. 1614-1620
-
-
Sabeti, P.C.1
Schaffner, S.F.2
Fry, B.3
Lohmueller, J.4
Varilly, P.5
Shamovsky, O.6
Palma, A.7
Mikkelsen, T.S.8
Altshuler, D.9
Lander, E.S.10
-
18
-
-
0021066244
-
Evolutionary relationship of DNA sequences in finite populations
-
1202167 6628982
-
Tajima F Evolutionary relationship of DNA sequences in finite populations Genetics 1983, 105(2):437-60. 1202167 6628982
-
(1983)
Genetics
, vol.105
, Issue.2
, pp. 437-460
-
-
Tajima, F.1
-
19
-
-
35548984721
-
Genetic and haplotypic structure in 14 European and African cattle breeds
-
2034613 17720924 10.1534/genetics.107.075804
-
Gautier M Faraut T Moazami-Goudarzi K Navratil V Foglio M Grohs C Boland A Garnier J Boichard D Lathrop GM Gut IG Eggen A Genetic and haplotypic structure in 14 European and African cattle breeds Genetics 2007, 177(2):1059-1070. 2034613 17720924 10.1534/genetics.107.075804
-
(2007)
Genetics
, vol.177
, Issue.2
, pp. 1059-1070
-
-
Gautier, M.1
Faraut, T.2
Moazami-Goudarzi, K.3
Navratil, V.4
Foglio, M.5
Grohs, C.6
Boland, A.7
Garnier, J.8
Boichard, D.9
Lathrop, G.M.10
Gut, I.G.11
Eggen, A.12
-
20
-
-
65649140354
-
Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae)
-
10.1186/1471-2164-10-177 19393045
-
MacEachern S McEwan J Goddard M Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae) BMC Genomics 2009, 10:177. 10.1186/1471-2164-10-177 19393045
-
(2009)
BMC Genomics
, vol.10
, pp. 177
-
-
MacEachern, S.1
McEwan, J.2
Goddard, M.3
-
21
-
-
65649132176
-
Whole Genome Mapping For Marbling QTL In A Commercial Angus Cattle Population
-
Town & Country Hotel, San Diego, CA
-
McClure MC Schnabel RD Morsci NS Kim JW Sellner EM Yao P Taylor JF Whole Genome Mapping For Marbling QTL In A Commercial Angus Cattle Population Plant & Animal Genome XV Conference Town & Country Hotel, San Diego, CA 2007:P524.
-
(2007)
Plant & Animal Genome XV Conference
-
-
McClure, M.C.1
Schnabel, R.D.2
Morsci, N.S.3
Kim, J.W.4
Sellner, E.M.5
Yao, P.6
Taylor, J.F.7
-
23
-
-
0032221242
-
Genetics and Domestic Cattle Origins
-
10.1002/(SICI)1520-6505(1998)6:3<79::AID-EVAN2>3.0.CO;2-R
-
Bradley DG Loftus RT Cunningham P Machugh DE Genetics and Domestic Cattle Origins Evolutionary Anthropology 1998, 6(3):79-86. 10.1002/ (SICI)1520-6505(1998)6:3<79::AID-EVAN2>3.0.CO;2-R
-
(1998)
Evolutionary Anthropology
, vol.6
, Issue.3
, pp. 79-86
-
-
Bradley, D.G.1
Loftus, R.T.2
Cunningham, P.3
Machugh, D.E.4
-
24
-
-
0037043719
-
Evolution, consequences and future of plant and animal domestication
-
10.1038/nature01019 12167878
-
Diamond J Evolution, consequences and future of plant and animal domestication Nature 2002, 418(6898):700-7. 10.1038/nature01019 12167878
-
(2002)
Nature
, vol.418
, Issue.6898
, pp. 700-707
-
-
Diamond, J.1
-
25
-
-
0242354083
-
DNA markers reveal the complexity of livestock domestication
-
10.1038/nrg1203 14634637
-
Bruford MW Bradley DG Luikart G DNA markers reveal the complexity of livestock domestication Nat Rev Genet 2003, 4:900-910. 10.1038/nrg1203 14634637
-
(2003)
Nat Rev Genet
, vol.4
, pp. 900-910
-
-
Bruford, M.W.1
Bradley, D.G.2
Luikart, G.3
-
26
-
-
8844227502
-
Population History and Natural Selection Shape Patterns of Genetic Variation in 132 Genes
-
10.1371/journal.pbio.0020286
-
Akey JM Eberle MA Rieder MJ Carlson CS Shriver MD Nickerson DA Kruglyak L Population History and Natural Selection Shape Patterns of Genetic Variation in 132 Genes PLOS Biol 2004, 2(10):1591-1599. 10.1371/ journal.pbio.0020286
-
(2004)
PLOS Biol
, vol.2
, Issue.10
, pp. 1591-1599
-
-
Akey, J.M.1
Eberle, M.A.2
Rieder, M.J.3
Carlson, C.S.4
Shriver, M.D.5
Nickerson, D.A.6
Kruglyak, L.7
-
27
-
-
65649131943
-
Molecular evolution of the Bovini tribe (Bovidae, Bovinae): Is there evidence of rapid evolution or reduced selective constraint in Domestic cattle?
-
10.1186/1471-2164-10-179
-
MacEachern S McEwan J McCulloch A Mather A Savin K Goddard M Molecular evolution of the Bovini tribe (Bovidae, Bovinae): Is there evidence of rapid evolution or reduced selective constraint in Domestic cattle? BMC Genomics 2009, 10:179. 10.1186/1471-2164-10-179 19393048
-
(2009)
BMC Genomics
, vol.10
, pp. 179
-
-
MacEachern, S.1
McEwan, J.2
McCulloch, A.3
Mather, A.4
Savin, K.5
Goddard, M.6
-
28
-
-
0037154209
-
Mutation rates in mammalian genomes
-
117386 11792858 10.1073/pnas.022629899
-
Kumar S Subramanian S Mutation rates in mammalian genomes Proc Natl Acad Sci USA 2002, 99(2):803-8. 117386 11792858 10.1073/pnas.022629899
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.2
, pp. 803-808
-
-
Kumar, S.1
Subramanian, S.2
-
29
-
-
0034933293
-
Differential introgression of uniparentally inherited markers in bison populations with hybrid ancestries
-
10.1046/j.1365-2052.2001.00736.x 11421943
-
Ward TJ Skow LC Gallagher DS Schnabel RD Nall CA Kolenda CE Davis SK Taylor JF Derr JN Differential introgression of uniparentally inherited markers in bison populations with hybrid ancestries Anim Genet 2001, 32(2):89-91. 10.1046/j.1365-2052.2001.00736.x 11421943
-
(2001)
Anim Genet
, vol.32
, Issue.2
, pp. 89-91
-
-
Ward, T.J.1
Skow, L.C.2
Gallagher, D.S.3
Schnabel, R.D.4
Nall, C.A.5
Kolenda, C.E.6
Davis, S.K.7
Taylor, J.F.8
Derr, J.N.9
-
30
-
-
21244442314
-
Conservation genomics: Disequilibrium mapping of domestic cattle chromosomal segments in North American bison populations
-
10.1111/j.1365-294x.2005.02591.x 15969719
-
Halbert ND Ward TJ Schnabel RD Taylor JF Derr JN Conservation genomics: disequilibrium mapping of domestic cattle chromosomal segments in North American bison populations Mol Ecol 2005, 14(8):2343-62. 10.1111/ j.1365-294x.2005.02591.x 15969719
-
(2005)
Mol Ecol
, vol.14
, pp. 2343-2362
-
-
Halbert, N.D.1
Ward, T.J.2
Schnabel, R.D.3
Taylor, J.F.4
Derr, J.N.5
-
31
-
-
0029415835
-
Divergence time and population size in the lineage leading to modern humans
-
10.1006/tpbi.1995.1026 7482371
-
Takahata N Satta Y Klein J Divergence time and population size in the lineage leading to modern humans Theor Popul Biol 1995, 48(2):198-221. 10.1006/tpbi.1995.1026 7482371
-
(1995)
Theor Popul Biol
, vol.48
, Issue.2
, pp. 198-221
-
-
Takahata, N.1
Satta, Y.2
Klein, J.3
-
33
-
-
52049096371
-
Linkage disequilibrium and persistence of phase in Holstein Friesian, Jersey and Angus cattle
-
2475750
-
de Roos APW Hayes BJ Spelman RJ Goddard ME Linkage disequilibrium and persistence of phase in Holstein Friesian, Jersey and Angus cattle Genetics 2008 179 1503 1512 2475750 18622038 10.1534/genetics.107.084301
-
(2008)
Genetics
, vol.179
, pp. 1503-1512
-
-
de Roos, A.P.W.1
Hayes, B.J.2
Spelman, R.J.3
Goddard, M.E.4
-
34
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
187518 11932250
-
Kent WJ BLAT - the BLAST-like alignment tool Genome Res 2002, 12(4):656-64. 187518 11932250
-
(2002)
Genome Res
, vol.12
, Issue.4
, pp. 656-664
-
-
Kent, W.J.1
-
36
-
-
0038781903
-
Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes
-
430942 12727904 10.1101/gr.1152803
-
Subramanian S Kumar S Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes Genome Res 2003, 13(5):838-44. 430942 12727904 10.1101/gr.1152803
-
(2003)
Genome Res
, vol.13
, Issue.5
, pp. 838-844
-
-
Subramanian, S.1
Kumar, S.2
|