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Volumn 10, Issue , 2009, Pages

Molecular evolution of the Bovini tribe (Bovidae, Bovinae): Is there evidence of rapid evolution or reduced selective constraint in Domestic cattle?

Author keywords

[No Author keywords available]

Indexed keywords

CPG DINUCLEOTIDE; DINUCLEOTIDE; UNCLASSIFIED DRUG;

EID: 65649131943     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-179     Document Type: Article
Times cited : (32)

References (42)
  • 2
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • 10.1038/351652a0 1904993
    • McDonald JH Kreitman M Adaptive protein evolution at the Adh locus in Drosophila Nature 1991, 351(6328):652-4. 10.1038/351652a0 1904993
    • (1991) Nature , vol.351 , Issue.6328 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 3
    • 65649140354 scopus 로고    scopus 로고
    • Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae)
    • 10.1186/1471-2164-10-177 19393045
    • MacEachern S McEwan J Goddard M Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae) BMC Genomics 2009, 10:177. 10.1186/1471-2164-10-177 19393045
    • (2009) BMC Genomics , vol.10 , pp. 177
    • MacEachern, S.1    McEwan, J.2    Goddard, M.3
  • 4
    • 0032221242 scopus 로고    scopus 로고
    • Genetics and Domestic Cattle Origins
    • 10.1002/(SICI)1520-6505(1998)6:3<79::AID-EVAN2>3.0.CO;2-R
    • Bradley DG Loftus RT Cunningham P Machugh DE Genetics and Domestic Cattle Origins Evolutionary Anthropology 1998, 6(3):79-86. 10.1002/ (SICI)1520-6505(1998)6:3<79::AID-EVAN2>3.0.CO;2-R
    • (1998) Evolutionary Anthropology , vol.6 , Issue.3 , pp. 79-86
    • Bradley, D.G.1    Loftus, R.T.2    Cunningham, P.3    Machugh, D.E.4
  • 5
    • 0037043719 scopus 로고    scopus 로고
    • Evolution, consequences and future of plant and animal domestication
    • 10.1038/nature01019 12167878
    • Diamond J Evolution, consequences and future of plant and animal domestication Nature 2002, 418(6898):700-7. 10.1038/nature01019 12167878
    • (2002) Nature , vol.418 , Issue.6898 , pp. 700-707
    • Diamond, J.1
  • 6
    • 0242354083 scopus 로고    scopus 로고
    • DNA markers reveal the complexity of livestock domestication
    • 10.1038/nrg1203 14634637
    • Bruford MW Bradley DG Luikart G DNA markers reveal the complexity of livestock domestication Nat Rev Genet 2003, 4:900-910. 10.1038/nrg1203 14634637
    • (2003) Nat Rev Genet , vol.4 , pp. 900-910
    • Bruford, M.W.1    Bradley, D.G.2    Luikart, G.3
  • 8
    • 0242500969 scopus 로고    scopus 로고
    • Novel Multilocus Measure of Linkage Disequilibrium to Estimate Past Effective Population Size
    • 430161 12654718 10.1101/gr.387103
    • Hayes BJ Visscher PM McPartlan HC Goddard ME Novel Multilocus Measure of Linkage Disequilibrium to Estimate Past Effective Population Size Genome Research 2003,13(4):635-643. 430161 12654718 10.1101/gr.387103
    • (2003) Genome Research , vol.13 , Issue.4 , pp. 635-643
    • Hayes, B.J.1    Visscher, P.M.2    McPartlan, H.C.3    Goddard, M.E.4
  • 11
    • 2142816799 scopus 로고    scopus 로고
    • Quantitative trait loci mapping for dairy cattle production traits using a maximum likelihood method
    • 14762092
    • Liu Y Jansen GB Lin CY Quantitative trait loci mapping for dairy cattle production traits using a maximum likelihood method J Dairy Sci 2004, 87(2):491-500. 14762092
    • (2004) J Dairy Sci , vol.87 , Issue.2 , pp. 491-500
    • Liu, Y.1    Jansen, G.B.2    Lin, C.Y.3
  • 12
    • 33646869496 scopus 로고    scopus 로고
    • Testing the neutral theory of molecular evolution using genomic data: A comparison of the human and bovine transcriptome
    • 10.1051/gse:2006007 16635453
    • MacEachern S McEwan J Mather A McCulloch A Sunnucks P Goddard M Testing the neutral theory of molecular evolution using genomic data: A comparison of the human and bovine transcriptome Genet Sel Evol 2006, 38(3):321-41. 10.1051/gse:2006007 16635453
    • (2006) Genet Sel Evol , vol.38 , Issue.3 , pp. 321-341
    • MacEachern, S.1    McEwan, J.2    Mather, A.3    McCulloch, A.4    Sunnucks, P.5    Goddard, M.6
  • 13
    • 0025779286 scopus 로고
    • Synonymous nucleotide substitution rates in mammalian genes: Implications for the molecular clock and the relationship of mammalian orders
    • 52004 2068073 10.1073/pnas.88.14.5974
    • Bulmer M Wolfe KH Sharp PM Synonymous nucleotide substitution rates in mammalian genes: Implications for the molecular clock and the relationship of mammalian orders Proc Natl Acad Sci USA 1991, 88(14):5974-8. 52004 2068073 10.1073/pnas.88.14.5974
    • (1991) Proc Natl Acad Sci USA , vol.88 , Issue.14 , pp. 5974-5978
    • Bulmer, M.1    Wolfe, K.H.2    Sharp, P.M.3
  • 14
    • 0025912824 scopus 로고
    • Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population genetics
    • 52003 2068072 10.1073/pnas.88.14.5969
    • Kimura M Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population genetics Proc Natl Acad Sci USA 1991, 88(14):5969-73. 52003 2068072 10.1073/pnas.88.14.5969
    • (1991) Proc Natl Acad Sci USA , vol.88 , Issue.14 , pp. 5969-5973
    • Kimura, M.1
  • 16
    • 0038781903 scopus 로고    scopus 로고
    • Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes
    • 430942 12727904 10.1101/gr.1152803
    • Subramanian S Kumar S Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes Genome Res 2003, 13(5):838-44. 430942 12727904 10.1101/gr.1152803
    • (2003) Genome Res , vol.13 , Issue.5 , pp. 838-844
    • Subramanian, S.1    Kumar, S.2
  • 17
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • 10.1038/nature01262 12466850
    • Mouse Genome Sequencing Consortium Initial sequencing and comparative analysis of the mouse genome Nature 2002, 420(6915):520-562. 10.1038/ nature01262 12466850
    • (2002) Nature , vol.420 , Issue.6915 , pp. 520-562
  • 18
    • 0033977618 scopus 로고    scopus 로고
    • Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate
    • 10666707
    • Duret L Mouchiroud D Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate Mol Biol Evol 2000, 17(1):68-74. 10666707
    • (2000) Mol Biol Evol , vol.17 , Issue.1 , pp. 68-74
    • Duret, L.1    Mouchiroud, D.2
  • 19
    • 0019134329 scopus 로고
    • Molecular evolution of mRNA: A method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application
    • 10.1007/BF01732067 6449605
    • Miyata T Yasunaga T Molecular evolution of mRNA: A method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application J Mol Evol 1980, 16(1):23-36. 10.1007/BF01732067 6449605
    • (1980) J Mol Evol , vol.16 , Issue.1 , pp. 23-36
    • Miyata, T.1    Yasunaga, T.2
  • 20
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • 3916709
    • Li WH Wu CI Luo CC A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes Mol Biol Evol 1985, 2(2):150-74. 3916709
    • (1985) Mol Biol Evol , vol.2 , Issue.2 , pp. 150-174
    • Li, W.H.1    Wu, C.I.2    Luo, C.C.3
  • 21
    • 0022507362 scopus 로고
    • Simple methods for estimating the number of synonymous and nonsynonymous nucleotide substitutions
    • 3444411
    • Nei M Gojorbi T Simple methods for estimating the number of synonymous and nonsynonymous nucleotide substitutions Mol Biol Evol 1986, 3(5):418-426. 3444411
    • (1986) Mol Biol Evol , vol.3 , Issue.5 , pp. 418-426
    • Nei, M.1    Gojorbi, T.2
  • 22
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • 10.1007/BF02407308 8433381
    • Li WH Unbiased estimation of the rates of synonymous and nonsynonymous substitution J Mol Evol 1993, 36(1)96-9. 10.1007/BF02407308 8433381
    • (1993) J Mol Evol , vol.36 , Issue.1 , pp. 96-99
    • Li, W.H.1
  • 23
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • 7968486
    • Goldman N Yang Z A codon-based model of nucleotide substitution for protein-coding DNA sequences Mol Biol Evol 1994, 11(5):725-36. 7968486
    • (1994) Mol Biol Evol , vol.11 , Issue.5 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 24
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • 1460041 9539414
    • Nielsen R Yang Z Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene Genetics 1998, 148(3):929-36. 1460041 9539414
    • (1998) Genetics , vol.148 , Issue.3 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 25
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • 12032247
    • Yang Z Nielsen R Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages Mol Biol Evol 2002, 19(6):908-17. 12032247
    • (2002) Mol Biol Evol , vol.19 , Issue.6 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 26
    • 20444427160 scopus 로고    scopus 로고
    • Time Dependency of Molecular Rate Estimates and Systematic Overestimation of Recent Divergence Times
    • 10.1093/molbev/msi145 15814826
    • Ho SY Phillips MJ Cooper A Drummond AJ Time Dependency of Molecular Rate Estimates and Systematic Overestimation of Recent Divergence Times Mol Biol Evol 2005, 22(7):1561-1568. 10.1093/molbev/msi145 15814826
    • (2005) Mol Biol Evol , vol.22 , Issue.7 , pp. 1561-1568
    • Ho, S.Y.1    Phillips, M.J.2    Cooper, A.3    Drummond, A.J.4
  • 27
    • 0029415835 scopus 로고
    • Divergence time and population size in the lineage leading to modern humans
    • 10.1006/tpbi.1995.1026 7482371
    • Takahata N Satta Y Klein J Divergence time and population size in the lineage leading to modern humans Theor Popul Biol 1995, 48(2):198-221. 10.1006/tpbi.1995.1026 7482371
    • (1995) Theor Popul Biol , vol.48 , Issue.2 , pp. 198-221
    • Takahata, N.1    Satta, Y.2    Klein, J.3
  • 28
    • 3242714766 scopus 로고    scopus 로고
    • Pattern of polymorphism after strong artificial selection in a domestication event
    • 489992 15249682 10.1073/pnas.0401720101
    • Innan H Kim Y Pattern of polymorphism after strong artificial selection in a domestication event Proc Natl Acad Sci USA 2004, 101(29):10667-72. 489992 15249682 10.1073/pnas.0401720101
    • (2004) Proc Natl Acad Sci USA , vol.101 , Issue.29 , pp. 10667-10672
    • Innan, H.1    Kim, Y.2
  • 30
    • 33344458581 scopus 로고    scopus 로고
    • The accumulation of deleterious mutations in rice genomes: A hypothesis on the cost of domestication
    • 10.1016/j.tig.2006.01.004
    • Lu J Tang T Tang H Huang J Shi S Wu CI The accumulation of deleterious mutations in rice genomes: A hypothesis on the cost of domestication Trends Genet 2006, 22(3):126-31. 10.1016/j.tig.2006.01.004 16443304
    • (2006) Trends Genet , vol.22 , pp. 126-131
    • Lu, J.1    Tang, T.2    Tang, H.3    Huang, J.4    Shi, S.5    Wu, C.I.6
  • 31
    • 21244442314 scopus 로고    scopus 로고
    • Conservation genomics: Disequilibrium mapping of domestic cattle chromosomal segments in North American bison populations
    • 10.1111/j.1365-294x.2005.02591.x 15969719
    • Halbert ND Ward TJ Schnabel RD Taylor JF Derr JN Conservation genomics: disequilibrium mapping of domestic cattle chromosomal segments in North American bison populations Mol Ecol 2005, 14(8):2343-62. 10.1111/ j.1365-294x.2005.02591.x 15969719
    • (2005) Mol Ecol , vol.14 , Issue.8 , pp. 2343-2362
    • Halbert, N.D.1    Ward, T.J.2    Schnabel, R.D.3    Taylor, J.F.4    Derr, J.N.5
  • 32
    • 0030000951 scopus 로고    scopus 로고
    • Excess amino acid polymorphism in mitochondrial DNA: Contrasts among genes from Drosophila, mice, and humans
    • 8754210
    • Rand DM Kann LM Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans Mol Biol Evol 1996, 13(6):735-48. 8754210
    • (1996) Mol Biol Evol , vol.13 , Issue.6 , pp. 735-748
    • Rand, D.M.1    Kann, L.M.2
  • 33
    • 7344225509 scopus 로고    scopus 로고
    • Deleterious mutations in animal mitochondrial DNA
    • 10.1023/A:1017030708374
    • Nachman MW Deleterious mutations in animal mitochondrial DNA Genetica 1998, 102-103(1-6):61-9. 10.1023/A:1017030708374
    • (1998) Genetica , vol.102-103 , Issue.1-6 , pp. 61-69
    • Nachman, M.W.1
  • 34
    • 0033824906 scopus 로고    scopus 로고
    • Contrasting patterns of nonneutral evolution in proteins encoded in nuclear and mitochondrial genomes
    • 1461243 10978302
    • Weinreich DM Rand DM Contrasting patterns of nonneutral evolution in proteins encoded in nuclear and mitochondrial genomes Genetics 2000, 156(1):385-99. 1461243 10978302
    • (2000) Genetics , vol.156 , Issue.1 , pp. 385-399
    • Weinreich, D.M.1    Rand, D.M.2
  • 35
    • 0034575442 scopus 로고    scopus 로고
    • Methods to detect selection in populations with applications to the human
    • 10.1146/annurev.genom.1.1.539 11701640
    • Kreitman M Methods to detect selection in populations with applications to the human Annu Rev Genomics Hum Genet 2000, 1:539-59. 10.1146/ annurev.genom.1.1.539 11701640
    • (2000) Annu Rev Genomics Hum Genet , vol.1 , pp. 539-559
    • Kreitman, M.1
  • 38
    • 3042555003 scopus 로고    scopus 로고
    • Maternal and paternal lineages in cross-breeding bovine species. Has wisent a hybrid origin?
    • 10.1093/molbev/msh064 14739241
    • Verkaar EL Nijman IJ Beeke M Hanekamp E Lenstra JA Maternal and paternal lineages in cross-breeding bovine species. Has wisent a hybrid origin? Mol Biol Evol 2004, 21(7):1165-70. 10.1093/molbev/msh064 14739241
    • (2004) Mol Biol Evol , vol.21 , Issue.7 , pp. 1165-1170
    • Verkaar, E.L.1    Nijman, I.J.2    Beeke, M.3    Hanekamp, E.4    Lenstra, J.A.5
  • 40
    • 35448932025 scopus 로고    scopus 로고
    • Protein evolution within and between species
    • 10.1016/j.jtbi.2007.08.001 17881006
    • Schmitt AO Schuchhardt J Ludwig A Brockmann GA Protein evolution within and between species J Theor Biol 2007, 249:376-83. 10.1016/ j.jtbi.2007.08.001 17881006
    • (2007) J Theor Biol , vol.249 , pp. 376-383
    • Schmitt, A.O.1    Schuchhardt, J.2    Ludwig, A.3    Brockmann, G.A.4
  • 41
    • 58149268313 scopus 로고    scopus 로고
    • Molecular evolution of the domesticated cow (Bos taurus)
    • La Trobe University, Genetics Department
    • MacEachern S Molecular evolution of the domesticated cow (Bos taurus) PhD thesis La Trobe University, Genetics Department 2007.
    • (2007) PhD Thesis
    • MacEachern, S.1
  • 42
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • 10666704
    • Yang Z Nielsen R Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models Mol Biol Evol 2000, 17(1):32-43. 10666704
    • (2000) Mol Biol Evol , vol.17 , Issue.1 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2


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