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Volumn 10, Issue , 2009, Pages

Analyses of domains and domain fusions in human proto-oncogenes

Author keywords

[No Author keywords available]

Indexed keywords

DOMAIN IDENTIFICATION; FUNCTIONAL DOMAINS; HUMAN GENES; HUMAN ONCOGENE; PROTO-ONCOGENES; TYROSINE KINASE;

EID: 65549157822     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-10-88     Document Type: Article
Times cited : (5)

References (45)
  • 2
    • 7944231535 scopus 로고    scopus 로고
    • The road to Src
    • 10.1038/sj.onc.1208077 15489909
    • Steven Martin G The road to Src Oncogene 2004, 23:7910-7917. 10.1038/ sj.onc.1208077 15489909
    • (2004) Oncogene , vol.23 , pp. 7910-7917
    • Steven Martin, G.1
  • 3
  • 4
    • 0027991446 scopus 로고
    • The FSSP database of structurally aligned protein fold families
    • 308329 7937067
    • Holm L Sander C The FSSP database of structurally aligned protein fold families Nucleic Acids Res 1994, 22:3600-3609. 308329 7937067
    • (1994) Nucleic Acids Res , vol.22 , pp. 3600-3609
    • Holm, L.1    Sander, C.2
  • 5
    • 0028943588 scopus 로고
    • Continuous and discontinuous domains: An algorithm for the automatic generation of reliable protein domain definitions
    • 2143117 7663343
    • Siddiqui AS Barton GJ Continuous and discontinuous domains: An algorithm for the automatic generation of reliable protein domain definitions Protein Sci 1995, 4:872-884. 2143117 7663343
    • (1995) Protein Sci , vol.4 , pp. 872-884
    • Siddiqui, A.S.1    Barton, G.J.2
  • 6
    • 0028937153 scopus 로고
    • A procedure for detecting structural domains in proteins
    • 2142966 7773168
    • Swindells MB A procedure for detecting structural domains in proteins Protein Sci 1995, 4:103-112. 2142966 7773168
    • (1995) Protein Sci , vol.4 , pp. 103-112
    • Swindells, M.B.1
  • 7
    • 0032189646 scopus 로고    scopus 로고
    • Dictionary of recurrent domains in protein structures
    • 10.1002/(SICI)1097-0134(19981001)33:1<88::AID-PROT8>3.0.CO;2-H 9741847
    • Holm L Sander C Dictionary of recurrent domains in protein structures Proteins 1998, 33:88-96. 10.1002/ (SICI)1097-0134(19981001)33:1<88::AID-PROT8>3.0.CO;2-H 9741847
    • (1998) Proteins , vol.33 , pp. 88-96
    • Holm, L.1    Sander, C.2
  • 9
    • 0032568655 scopus 로고    scopus 로고
    • SMART, a simple modular architecture research tool: Identification of signalling domains
    • 34487 9600884 10.1073/pnas.95.11.5857
    • Schultz J Milpetz F Bork P Ponting CP SMART, a simple modular architecture research tool: Identification of signalling domains Proc Natl Acad Sci 1998, 95:5857-5864. 34487 9600884 10.1073/pnas.95.11.5857
    • (1998) Proc Natl Acad Sci , vol.95 , pp. 5857-5864
    • Schultz, J.1    Milpetz, F.2    Bork, P.3    Ponting, C.P.4
  • 11
    • 0034693799 scopus 로고    scopus 로고
    • The protein tyrosine kinase family of the human genome
    • 10.1038/sj.onc.1203957 11114734
    • Robinson R Dan Wu Yi-Mi Lin Su-Fang The protein tyrosine kinase family of the human genome Oncogene 2000, 19:5548-5557. 10.1038/sj.onc.1203957 11114734
    • (2000) Oncogene , vol.19 , pp. 5548-5557
    • Robinson, D.1    Wu, Y.-M.2    Lin, S.-F.3
  • 12
    • 0035395872 scopus 로고    scopus 로고
    • The ATM-related domain of TRRAP is required for histone acetyltransferase recruitment and Myc-dependent oncogenesis
    • 312730 11445536 10.1101/gad.900101
    • Park Jeonghyeon Kunjibettu Sudeesha McMahon B Steven Cole D Michael The ATM-related domain of TRRAP is required for histone acetyltransferase recruitment and Myc-dependent oncogenesis Genes Dev 2001, 15:1619-1624. 312730 11445536 10.1101/gad.900101
    • (2001) Genes Dev , vol.15 , pp. 1619-1624
    • Park, J.1    Kunjibettu, S.2    McMahon, S.3    Cole, M.4
  • 14
    • 0033057517 scopus 로고    scopus 로고
    • Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer
    • 10.1006/jmbi.1999.2827 10369758
    • Ponting CP Aravind L Schultz J Bork P Koonin EV Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer J Mol Biol 1999, 289(4):729-745. 10.1006/ jmbi.1999.2827 10369758
    • (1999) J Mol Biol , vol.289 , Issue.4 , pp. 729-745
    • Ponting, C.P.1    Aravind, L.2    Schultz, J.3    Bork, P.4    Koonin, E.V.5
  • 15
    • 33751204154 scopus 로고    scopus 로고
    • Tracing the origin of functional and conserved domains in the human proteome: Implications for protein evolution at the modular level
    • 1654190 17090320 10.1186/1471-2148-6-91
    • Lipika R Pal Chittibabu Guda Tracing the origin of functional and conserved domains in the human proteome: Implications for protein evolution at the modular level BMC Evolutionary Biology 2006, 6:91. 1654190 17090320 10.1186/1471-2148-6-91
    • (2006) BMC Evolutionary Biology , vol.6 , pp. 91
    • Lipika, R.P.1    Chittibabu, G.2
  • 17
    • 0027333330 scopus 로고
    • Hundreds of ankyrin-like repeats in functionallydiverse proteins: Mobile modules that cross phyla horizontally?
    • 10.1002/prot.340170405
    • Bork P Hundreds of ankyrin-like repeats in functionallydiverse proteins: mobile modules that cross phyla horizontally? Proteins: Structure, Function, and Genetics 1993, 17(4):363-74. 10.1002/prot.340170405
    • (1993) Proteins: Structure, Function, and Genetics , vol.17 , Issue.4 , pp. 363-374
    • Bork, P.1
  • 18
    • 33645516795 scopus 로고    scopus 로고
    • DDX3, a DEAD box RNA helicase, is deregulated in hepatitis virus-associated hepatocellular carcinoma and is involved in cell growth control
    • 10.1038/sj.onc.1209239 16301996
    • Chang PC Chi CW Chau GY Li FY Tsai YH Wu JC DDX3, a DEAD box RNA helicase, is deregulated in hepatitis virus-associated hepatocellular carcinoma and is involved in cell growth control Oncogene 2006, 25:1991-2003. 10.1038/sj.onc.1209239 16301996
    • (2006) Oncogene , vol.25 , pp. 1991-2003
    • Chang, P.C.1    Chi, C.W.2    Chau, G.Y.3    Li, F.Y.4    Tsai, Y.H.5    Wu, J.C.6
  • 19
    • 0020181029 scopus 로고
    • Retroviruses and cancer
    • 6755614
    • Robinson HL Retroviruses and cancer Rev Infect Dis 1982, 4(5):1015-25. 6755614
    • (1982) Rev Infect Dis , vol.4 , Issue.5 , pp. 1015-1025
    • Robinson, H.L.1
  • 21
    • 0004131381 scopus 로고    scopus 로고
    • Coffin J Hughes SH Varmus HE eds Cold Spring Harbor Laboratory Press, New York
    • Coffin J Hughes SH Varmus HE eds Retroviruses Cold Spring Harbor Laboratory Press, New York 1997.
    • (1997) Retroviruses
  • 22
    • 0021733824 scopus 로고
    • Homologies between signal transducing G proteins and gene products
    • 10.1126/science.6436980 6436980
    • Hurley JB Simon MI Teplow DB Homologies between signal transducing G proteins and gene products Science 1984, 226(4676):860-862. 10.1126/ science.6436980 6436980
    • (1984) Science , vol.226 , Issue.4676 , pp. 860-862
    • Hurley, J.B.1    Simon, M.I.2    Teplow, D.B.3
  • 24
    • 0033854662 scopus 로고    scopus 로고
    • Effects of carcinogen-induced transcription factors on the activation of hepatitis B virus expression in human hepatoblastoma HepG2 cells and its implication on hepatocellular carcinomas
    • 10.1053/jhep.2000.9197 10915744
    • Banerjee R Caruccio L Zhang YJ Mckercher S Santelia RM Effects of carcinogen-induced transcription factors on the activation of hepatitis B virus expression in human hepatoblastoma HepG2 cells and its implication on hepatocellular carcinomas Hepatology 2000, 32(2):367-74. 10.1053/jhep.2000.9197 10915744
    • (2000) Hepatology , vol.32 , Issue.2 , pp. 367-374
    • Banerjee, R.1    Caruccio, L.2    Zhang, Y.J.3    Mckercher, S.4    Santelia, R.M.5
  • 25
    • 0028800220 scopus 로고
    • Myc and Max: Molecular Evolution of a Family of Proto-Oncogene Products and Their Dimerization Partner
    • 40767 7479755 10.1073/pnas.92.22.10217
    • Atchley WR Fitch WM Myc and Max: Molecular Evolution of a Family of Proto-Oncogene Products and Their Dimerization Partner Proc Natl Acad Sci 1995, 92:10217-10221. 40767 7479755 10.1073/pnas.92.22.10217
    • (1995) Proc Natl Acad Sci , vol.92 , pp. 10217-10221
    • Atchley, W.R.1    Fitch, W.M.2
  • 26
    • 11944258513 scopus 로고
    • First non-vertebrate member of the myc gene family is seasonally expressed in an invertebrate testis
    • 1408141
    • Walker CW Boom JD Marsh AG First non-vertebrate member of the myc gene family is seasonally expressed in an invertebrate testis Oncogene 1992, 7(10):2007-2012. 1408141
    • (1992) Oncogene , vol.7 , Issue.10 , pp. 2007-2012
    • Walker, C.W.1    Boom, J.D.2    Marsh, A.G.3
  • 27
    • 0026655474 scopus 로고
    • Bcl-2 initiates a new category of oncogenes: Regulators of cell death
    • 1498330
    • Korsmeyer SJ Bcl-2 initiates a new category of oncogenes: Regulators of cell death Blood 1992, 80:879-886. 1498330
    • (1992) Blood , vol.80 , pp. 879-886
    • Korsmeyer, S.J.1
  • 28
    • 0034887573 scopus 로고    scopus 로고
    • Scale-free behavior in protein domain networks
    • 11504849
    • Wuchty Stefan Scale-free behavior in protein domain networks Mol Biol Evol 2001, 18:1694-1702. 11504849
    • (2001) Mol Biol Evol , vol.18 , pp. 1694-1702
    • Wuchty, S.1
  • 29
    • 33846059668 scopus 로고    scopus 로고
    • The Generation of New Protein Functions
    • 10.1016/j.str.2006.11.009 17223535
    • Bashton Matthew Chothia Cyrus The Generation of New Protein Functions Structure 2007, 15:85-99. 10.1016/j.str.2006.11.009 17223535
    • (2007) Structure , vol.15 , pp. 85-99
    • Bashton, M.1    Chothia, C.2
  • 30
    • 0034767547 scopus 로고    scopus 로고
    • Annotation Transfer for Genomics: Measuring Functional Divergence in Multi-Domain Proteins
    • 311165 11591640 10.1101/gr. 183801
    • Hegyi Hedi Gerstein Mark Annotation Transfer for Genomics: Measuring Functional Divergence in Multi-Domain Proteins Genome Res 2001, 11:1632-1640. 311165 11591640 10.1101/gr. 183801
    • (2001) Genome Res , vol.11 , pp. 1632-1640
    • Hegyi, H.1    Gerstein, M.2
  • 31
    • 0842268045 scopus 로고    scopus 로고
    • Supra-domains: Evolutionary Units Larger than Single Protein Domains
    • 10.1016/j.jmb.2003.12.026 15095989
    • Vogel Christine Berzuini Carlo Bashton Matthew Supra-domains: Evolutionary Units Larger than Single Protein Domains J Mol Biol 2004, 336:809-823. 10.1016/j.jmb.2003.12.026 15095989
    • (2004) J Mol Biol , vol.336 , pp. 809-823
    • Vogel, C.1    Berzuini, C.2    Bashton, M.3
  • 32
    • 0025938504 scopus 로고
    • Interallelic complementation among DER/flb alleles: Implications for the mechanism of signal transduction by receptor-tyrosine kinases
    • 1204566 1936959
    • Raz E Schejter ED Shilo BZ Interallelic complementation among DER/flb alleles: Implications for the mechanism of signal transduction by receptor-tyrosine kinases Genetics 1991, 129(1):191-201. 1204566 1936959
    • (1991) Genetics , vol.129 , Issue.1 , pp. 191-201
    • Raz, E.1    Schejter, E.D.2    Shilo, B.Z.3
  • 33
    • 0033551248 scopus 로고    scopus 로고
    • Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
    • 16324 10200254 10.1073/pnas.96.8.4285
    • Pellegrini Matteo Marcotte M Edward Thompson J Michael Eisenberg David Grothe Robert Yeates O Todd Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles Proc Natl Acad Sci 1999, 96:4285-4288. 16324 10200254 10.1073/pnas.96.8.4285
    • (1999) Proc Natl Acad Sci , vol.96 , pp. 4285-4288
    • Pellegrini, M.1    Marcotte, E.2    Thompson, M.3    Eisenberg, D.4    Grothe, R.5    Yeates, T.6
  • 34
    • 33846041078 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt)
    • The UniProt Consortium 1669721 17142230 10.1093/nar/gkl929
    • The UniProt Consortium The Universal Protein Resource (UniProt) Nucleic Acids Res 2007, 35:D193-197. 1669721 17142230 10.1093/nar/gkl929
    • (2007) Nucleic Acids Res , vol.35
  • 35
    • 4644340883 scopus 로고    scopus 로고
    • Activation of proteinase-activated receptor 1 promotes human colon cancer cell proliferation through epidermal growth factor receptor transactivation
    • 15383630
    • Darmoul Dalila Gratio Valérie Devaud Hélène Peiretti Franck Laburthe Marc Activation of proteinase-activated receptor 1 promotes human colon cancer cell proliferation through epidermal growth factor receptor transactivation Mol Cancer Res 2004, 2(9):514-522. 15383630
    • (2004) Mol Cancer Res , vol.2 , Issue.9 , pp. 514-522
    • Darmoul, D.1    Gratio, V.2    Devaud, H.3    Peiretti, F.4    Laburthe, M.5
  • 36
    • 33846227109 scopus 로고    scopus 로고
    • Targeting BRAF in thyroid cancer
    • 10.1038/sj.bjc.6603520 17179987
    • Espinosa AV Porchia L Ringel MD Targeting BRAF in thyroid cancer Br J Cancer 2007, 96(1):16-20. 10.1038/sj.bjc.6603520 17179987
    • (2007) Br J Cancer , vol.96 , Issue.1 , pp. 16-20
    • Espinosa, A.V.1    Porchia, L.2    Ringel, M.D.3
  • 39
    • 84874657353 scopus 로고    scopus 로고
    • ftp://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/ knowledgebase/
    • The Uniprot virus data ftp://ftp.ebi.ac.uk/pub/databases/uniprot/ current_release/knowledgebase/
    • The Uniprot Virus Data
  • 40
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • The Cancer Genome Atlas Research Network 10.1038/nature07385 18772890
    • The Cancer Genome Atlas Research Network Comprehensive genomic characterization defines human glioblastoma genes and core pathways Nature 2008, 455(7216):1061-1068. 10.1038/nature07385 18772890
    • (2008) Nature , vol.455 , pp. 1061-1068
  • 42
    • 0035827328 scopus 로고    scopus 로고
    • Microbial Genes in the Human Genome: Lateral Transfer or Gene Loss?
    • 10.1126/science.1061036 11358996
    • Salzberg L Steven White Owen Peterson Jeremy Eisen A Jonathan Microbial Genes in the Human Genome: Lateral Transfer or Gene Loss? Science 2001, 292:1903-1906. 10.1126/science.1061036 11358996
    • (2001) Science , vol.292 , pp. 1903-1906
    • Salzberg, S.1    White, O.2    Peterson, J.3    Eisen, J.4
  • 43
    • 0032404453 scopus 로고    scopus 로고
    • You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
    • 10.1016/S0168-9525(98)01494-2 9724962
    • Doolittle WF You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes Trends Genet 1998, 14(8):307-311. 10.1016/S0168-9525(98)01494-2 9724962
    • (1998) Trends Genet , vol.14 , Issue.8 , pp. 307-311
    • Doolittle, W.F.1
  • 44
    • 1542286754 scopus 로고    scopus 로고
    • A Comparative analysis of protein domain organization
    • 535408 14993202 10.1101/gr.1610504
    • Ye Y Godzik Z A Comparative analysis of protein domain organization Genome Res 2004, 14:343-353. 535408 14993202 10.1101/gr.1610504
    • (2004) Genome Res , vol.14 , pp. 343-353
    • Ye, Y.1    Godzik, Z.2
  • 45
    • 0346366819 scopus 로고    scopus 로고
    • Widespread production of novel soluble protein isoforms by alternative splicing removal of transmembrane anchoring domains
    • 10.1016/S0014-5793(03)01354-1 14675776
    • Xing Yi Xu Qiang Lee Christopher Widespread production of novel soluble protein isoforms by alternative splicing removal of transmembrane anchoring domains FEBS Letters 2003, 555:572-578. 10.1016/ S0014-5793(03)01354-1 14675776
    • (2003) FEBS Letters , vol.555 , pp. 572-578
    • Xing, Y.1    Xu, Q.2    Lee, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.