메뉴 건너뛰기




Volumn 164, Issue 3, 2009, Pages 276-281

Informativeness of dinucleotide repeat-based primers in fungal pathogen of rice Magnaporthe grisea

Author keywords

Dinucleotide repeats; Fungi; Magnaporthe grisea; Microsatellite; Polymorphic loci

Indexed keywords

SEMICONDUCTOR RELAYS;

EID: 65549156183     PISSN: 09445013     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.micres.2006.11.019     Document Type: Article
Times cited : (3)

References (29)
  • 1
    • 3042639381 scopus 로고    scopus 로고
    • Long perfect dinucleotide repeats are typical of vertebrates, show motif preferences and size convergence
    • Almeida P., and Penha-Goncalves C. Long perfect dinucleotide repeats are typical of vertebrates, show motif preferences and size convergence. Mol. Biol. Evol. 21 (2004) 1226-1233
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1226-1233
    • Almeida, P.1    Penha-Goncalves, C.2
  • 2
    • 0344848555 scopus 로고    scopus 로고
    • Inter-simple sequence repeats (ISSR) amplification for analysis of microsatellite motif frequency and fingerprinting in rice (Oryza sativa L.)
    • Blair M.W., Panaud O., and McCouch S.R. Inter-simple sequence repeats (ISSR) amplification for analysis of microsatellite motif frequency and fingerprinting in rice (Oryza sativa L.). Theor. Appl. Genet. 98 (1999) 780-792
    • (1999) Theor. Appl. Genet. , vol.98 , pp. 780-792
    • Blair, M.W.1    Panaud, O.2    McCouch, S.R.3
  • 3
    • 0038032028 scopus 로고    scopus 로고
    • Dinucleotide repeats in the drosophila and human genomes have complex, length-dependent mutation processes
    • Calabrese P., and Durrett R. Dinucleotide repeats in the drosophila and human genomes have complex, length-dependent mutation processes. Mol. Biol. Evol. 20 (2003) 715-725
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 715-725
    • Calabrese, P.1    Durrett, R.2
  • 4
    • 27744439684 scopus 로고    scopus 로고
    • Genetic diversity of Indian isolates of rice blast pathogen (Magnaporthe grisea) using molecular markers
    • Chadha S., and Gopalakrishna T. Genetic diversity of Indian isolates of rice blast pathogen (Magnaporthe grisea) using molecular markers. Curr. Sci. 88 (2005) 1466-1469
    • (2005) Curr. Sci. , vol.88 , pp. 1466-1469
    • Chadha, S.1    Gopalakrishna, T.2
  • 5
    • 33644512715 scopus 로고    scopus 로고
    • REMAP markers for genetic diversity assessment of the rice blast pathogen (Magnaporthe grisea)
    • Chadha S., and Gopalakrishna T. REMAP markers for genetic diversity assessment of the rice blast pathogen (Magnaporthe grisea). Genome 48 (2005) 943-945
    • (2005) Genome , vol.48 , pp. 943-945
    • Chadha, S.1    Gopalakrishna, T.2
  • 7
    • 0034079715 scopus 로고    scopus 로고
    • Heterogeneous mutation processes in human microsatellite DNA sequences
    • Ellegren H. Heterogeneous mutation processes in human microsatellite DNA sequences. Nat. Genet. 24 (2000) 400-402
    • (2000) Nat. Genet. , vol.24 , pp. 400-402
    • Ellegren, H.1
  • 8
    • 3042741186 scopus 로고    scopus 로고
    • Neighbor joining trees, dominant markers and population genetic structure
    • Hollingsworth P.M., and Ennos R.A. Neighbor joining trees, dominant markers and population genetic structure. Heredity 92 (2004) 490-498
    • (2004) Heredity , vol.92 , pp. 490-498
    • Hollingsworth, P.M.1    Ennos, R.A.2
  • 9
    • 0037462904 scopus 로고    scopus 로고
    • Genomic occurrence of microsatellites containing integral and non-integral repeat numbers
    • Hrabcova I., and Kypr J. Genomic occurrence of microsatellites containing integral and non-integral repeat numbers. Biochem. Biophy. Res. Commun. 300 (2003) 824-831
    • (2003) Biochem. Biophy. Res. Commun. , vol.300 , pp. 824-831
    • Hrabcova, I.1    Kypr, J.2
  • 10
    • 0034798845 scopus 로고    scopus 로고
    • Heat shock, copper sulfate and oxidative stress activate the retrotransposon MAGGY resident in the plant pathogenic fungus Magnaporthe grisea
    • Ikeda K., Nakayashiki H., Takagi M., Tosa Y., and Mayama S. Heat shock, copper sulfate and oxidative stress activate the retrotransposon MAGGY resident in the plant pathogenic fungus Magnaporthe grisea. Mol. Genet. Genom. 266 (2001) 318-325
    • (2001) Mol. Genet. Genom. , vol.266 , pp. 318-325
    • Ikeda, K.1    Nakayashiki, H.2    Takagi, M.3    Tosa, Y.4    Mayama, S.5
  • 11
    • 33745431027 scopus 로고    scopus 로고
    • Simple sequence repeats (SSR) markers in the ectomycorrhizal fungus Laccaria bicolor for environmental monitoring of introduced strains and molecular ecology applications
    • Jany J.L., Bousquet J., Gagne A., and Khasa D.P. Simple sequence repeats (SSR) markers in the ectomycorrhizal fungus Laccaria bicolor for environmental monitoring of introduced strains and molecular ecology applications. Mycol. Res. 110 (2006) 11051-11059
    • (2006) Mycol. Res. , vol.110 , pp. 11051-11059
    • Jany, J.L.1    Bousquet, J.2    Gagne, A.3    Khasa, D.P.4
  • 12
    • 11144254591 scopus 로고    scopus 로고
    • Do polymorphic loci require large sample sizes to estimate genetic distances?
    • Kalinowski S.T. Do polymorphic loci require large sample sizes to estimate genetic distances?. Heredity 94 (2005) 33-36
    • (2005) Heredity , vol.94 , pp. 33-36
    • Kalinowski, S.T.1
  • 13
    • 14544279926 scopus 로고    scopus 로고
    • Survey of simple sequence repeats in completed fungal genomes
    • Karaoglu H., Lee C.M.Y., and Meyer W. Survey of simple sequence repeats in completed fungal genomes. Mol. Biol. Evol. 22 (2005) 639-649
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 639-649
    • Karaoglu, H.1    Lee, C.M.Y.2    Meyer, W.3
  • 14
    • 0031081111 scopus 로고    scopus 로고
    • Simple sequence repeats as sources of quantitative variation
    • Kashi Y., King D., and Soller M. Simple sequence repeats as sources of quantitative variation. Trends Genet. 13 (1997) 74-78
    • (1997) Trends Genet. , vol.13 , pp. 74-78
    • Kashi, Y.1    King, D.2    Soller, M.3
  • 15
    • 0242383895 scopus 로고    scopus 로고
    • The development of simple sequence repeat markers for Magnaporthe grisea and their integration into an established genetic linkage map
    • Kaye C., Milazzo J., Rozenfeld S., Lebrun M.H., and Tharreau D. The development of simple sequence repeat markers for Magnaporthe grisea and their integration into an established genetic linkage map. Fung. Genet. Biol. 40 (2003) 207-214
    • (2003) Fung. Genet. Biol. , vol.40 , pp. 207-214
    • Kaye, C.1    Milazzo, J.2    Rozenfeld, S.3    Lebrun, M.H.4    Tharreau, D.5
  • 16
    • 0034732390 scopus 로고    scopus 로고
    • Isolation of TC/AG repeat microsatellite sequences for fingerprinting rice blast fungus and their possible horizontal transfer to plant species
    • Kim N.S., Park N.-I.I., Kim S.H., Kim S.T., Han S.S., and Kang K.Y. Isolation of TC/AG repeat microsatellite sequences for fingerprinting rice blast fungus and their possible horizontal transfer to plant species. Mol. Cell 10 (2000) 127-134
    • (2000) Mol. Cell , vol.10 , pp. 127-134
    • Kim, N.S.1    Park, N.-I.I.2    Kim, S.H.3    Kim, S.T.4    Han, S.S.5    Kang, K.Y.6
  • 17
    • 2442701496 scopus 로고    scopus 로고
    • Microsatellites within genes: structure, function, and evolution
    • Li Y.C., Korol A.B., Fahima T., and Nevo E. Microsatellites within genes: structure, function, and evolution. Mol. Biol. Evol. 21 (2004) 991-1007
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 991-1007
    • Li, Y.C.1    Korol, A.B.2    Fahima, T.3    Nevo, E.4
  • 18
    • 4644359310 scopus 로고    scopus 로고
    • A comparison of the nature and abundance of microsatellites in 14 fungal genomes
    • Lim S., McRobb N., Lim M., and Carter D.A. A comparison of the nature and abundance of microsatellites in 14 fungal genomes. Fung. Genet. Biol. 41 (2004) 1025-1036
    • (2004) Fung. Genet. Biol. , vol.41 , pp. 1025-1036
    • Lim, S.1    McRobb, N.2    Lim, M.3    Carter, D.A.4
  • 19
    • 1542318865 scopus 로고    scopus 로고
    • Diversity and molecular relationships of endophytic Colletotrichum isolates from the Iwokrama Forest Reserve, Guyana
    • Lu G., Cannon P.F., Reid A., and Simmons C.M. Diversity and molecular relationships of endophytic Colletotrichum isolates from the Iwokrama Forest Reserve, Guyana. Mycol. Res. 108 (2004) 53-63
    • (2004) Mycol. Res. , vol.108 , pp. 53-63
    • Lu, G.1    Cannon, P.F.2    Reid, A.3    Simmons, C.M.4
  • 20
    • 0033951367 scopus 로고    scopus 로고
    • Selection against frameshift mutations limits microsatellite expansion in coding DNA
    • Metzgar D., Bytof J., and Wills C. Selection against frameshift mutations limits microsatellite expansion in coding DNA. Genome Res. 10 (2000) 72-80
    • (2000) Genome Res. , vol.10 , pp. 72-80
    • Metzgar, D.1    Bytof, J.2    Wills, C.3
  • 21
    • 0002557060 scopus 로고
    • Rice blast
    • Commonwealth Mycological Institute, Kew, UK
    • Ou S.H. Rice blast. Rice Diseases (1985), Commonwealth Mycological Institute, Kew, UK 109-201
    • (1985) Rice Diseases , pp. 109-201
    • Ou, S.H.1
  • 22
    • 3943081431 scopus 로고    scopus 로고
    • DNA polymorphism among blackgram (Vigna mungo L. Hepper) genotypes using inter-simple sequence repeat (ISSR) markers
    • Ranade R., and Gopalakrishna T. DNA polymorphism among blackgram (Vigna mungo L. Hepper) genotypes using inter-simple sequence repeat (ISSR) markers. Plant. Genet. Resour. 2 (2004) 37-42
    • (2004) Plant. Genet. Resour. , vol.2 , pp. 37-42
    • Ranade, R.1    Gopalakrishna, T.2
  • 23
    • 0033808899 scopus 로고    scopus 로고
    • Evolutionary dynamics of microsatellite DNA
    • Schlotterer C. Evolutionary dynamics of microsatellite DNA. Chromosoma 109 (2000) 365-371
    • (2000) Chromosoma , vol.109 , pp. 365-371
    • Schlotterer, C.1
  • 24
    • 8144222430 scopus 로고    scopus 로고
    • Microsatellite mutation directed by an external stimulus
    • Schmidt A.L., and Mitter V. Microsatellite mutation directed by an external stimulus. Mut. Res. 568 (2004) 233-243
    • (2004) Mut. Res. , vol.568 , pp. 233-243
    • Schmidt, A.L.1    Mitter, V.2
  • 25
    • 0028140177 scopus 로고
    • Possible role of natural selection in the formation of tandem-repetitive non-coding DNA
    • Stephan W., and Cho S. Possible role of natural selection in the formation of tandem-repetitive non-coding DNA. Genet 136 (1994) 333-341
    • (1994) Genet , vol.136 , pp. 333-341
    • Stephan, W.1    Cho, S.2
  • 26
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: survey and analysis
    • Toth G., Gaspari Z., and Jurka J. Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res. 10 (2000) 1967-1981
    • (2000) Genome Res. , vol.10 , pp. 1967-1981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 27
    • 0024582686 scopus 로고
    • Abundant class of human DNA polymorphisms, which can be typed using the polymerase chain reaction
    • Weber J.L., and May P.E. Abundant class of human DNA polymorphisms, which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44 (1989) 388-396
    • (1989) Am. J. Hum. Genet. , vol.44 , pp. 388-396
    • Weber, J.L.1    May, P.E.2
  • 28
    • 0242632654 scopus 로고    scopus 로고
    • Microsatellite instability in yeast: dependence on the length of the microsatellite
    • Wierdl M., Dominska M., and Thomas D.P. Microsatellite instability in yeast: dependence on the length of the microsatellite. Theor. Popul. Biol. 53 (1997) 272-283
    • (1997) Theor. Popul. Biol. , vol.53 , pp. 272-283
    • Wierdl, M.1    Dominska, M.2    Thomas, D.P.3
  • 29
    • 0028316648 scopus 로고
    • Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification
    • Zietkiewicz E., Rafalski A., and Labuda D. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20 (1994) 176-183
    • (1994) Genomics , vol.20 , pp. 176-183
    • Zietkiewicz, E.1    Rafalski, A.2    Labuda, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.