The development of simple sequence repeat markers for Magnaporthe grisea and their integration into an established genetic linkage map

Fungal Genetics and Biology

Volumn 40, Issue 3, 2003, Pages 207-214

  Kaye, Claudia ^a   Milazzo, Joëlle ^a   Rozenfeld, Sophie ^b   Lebrun, Marc Henri ^b   Tharreau, Didier ^a  

^a Campus International de Baillarguet   (France)

^b BAYER AG   (Germany)

Author keywords

Magnaporthe grisea; Mapping; Microsatellite; Rice blast

Indexed keywords

AGAROSE; MICROSATELLITE DNA;

ALLELE; ARTICLE; ASCOMYCETES; ASSAY; DATA BASE; DNA POLYMORPHISM; FUNGAL STRAIN; FUNGUS ISOLATION; GENE AMPLIFICATION; GENE IDENTIFICATION; GENE INSERTION; GENE LIBRARY; GENE LOCUS; GENE MAPPING; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC LINKAGE; GENETIC MARKER; GENETIC SCREENING; MAGNAPORTHE GRISEA; NONHUMAN; PRIORITY JOURNAL; RICE BLAST; SIMPLE SEQUENCE REPEAT;

FUNGI; GENETTA; MAGNAPORTHE; MAGNAPORTHE GRISEA;

EID: 0242383895     PISSN: 10871845     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fgb.2003.08.001     Document Type: Article

References (31)

1. Bart-Delabesse E., Sarfati J., Debeaupuis J.P., van Leeuwen W., van Belkum A., Bretagne S., Latge J.P. Comparison of restriction fragments length polymorphism, microsatellite length polymorphism, and random amplification of polymorphic DNA analyses for fingerprinting Aspergillus fumigatus isolates. J. Clin. Microbiol. 39:2001;2683-2686.
2. Brondani C., Brondani R.P.V., Garridon L.R., Ferreira M.E. Development of microsatellite markers for genetic analysis of Magnaporthe grisea. Genet. Mol. Biol. 23:2000;753-762.
3. Chakraborty R., Kimmel M., Strivers D.N., Davison L.J., Deka R. Relative mutation rates at di- tri- and tetra-nucleotide microsatellite loci. Proc. Natl. Acad. Sci. USA. 94:1997;1041-1046.
4. Dettman J., Taylor J. Microsatellite evolution in Neurospora. Fungal Genet. Newslett. 50(suppl):2003;144.
5. Dioh W., Tharreau D., Notteghem J.-L., Orbach M., Lebrun M.-H. Mapping of avirulence genes in the rice blast fungus, Magnaporthe grisea with RFLP and RAPD markers. Mol. Plant-Microbe Interact. 13:2000;217-237.
6. Eisen J.A. Mechanistic basis of microsatellite instability. Goldstein D.B., Schlotterer C. Microsatellites: Evolution and Applications. 1999;34-48 Oxford University Press, Oxford.
7. Eujayl I., Sorrells M.E., Baum M., Wolters P., Powell W. Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat. Theor. Appl. Genet. 104:2002;399-407.
8. Farman M.L., Leong S.A. Genetic and physical mapping of telomeres in the rice blast fungus, Magnaporthe grisea. Genetics. 140:1995;479-492.
9. Fisher M.C., Koenig G., White T.J., Taylor J.W. A test for concordance between the multilocus genealogies of genes and microsatellites in the pathogenic fungus Coccidioides immitis. Mol. Biol. Evol. 17:2000;1164-1174.
10. Kim N.S., Park N.I., Kim S.U., Kim S.T., Han S.S., Kang K.Y. Isolation of TC/AG repeat microsatellite sequences for fingerprinting rice blast fungus and their possible horizontal transfer to plant species. Mol. Cells. 10:2000;127-134.
11. Kretzer A.M., Molina R., Sparafora J.W. Microsatellite markers for ectomycorrhizal basidiomycete Rhizopogon vinicolor. Primer Notes Mol. Ecol. 9:2000;1190-1191.
12. Lander E.S., Green P., Abrahamson J., Barlow A., Daly M.J., Lincoln S.E., Newburg L. MAPMAKER: an interactive computer package for constructing primary genetic maps of experimental and natural populations. Genomics. 1:1987;174-181.
13. Leung H., Borromeo S., Bernardo M.A., Notteghem J.L. Genetic analysis of virulence in the rice blast fungus Magnaporthe grisea. Phytopathology. 78:1988;1227-1233.
14. Levinson G., Gutman G.A. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4:1987;203-221.
15. Lian C., Hogetsu T., Matsushita N., Guerin-Laguette A., Suzuki K., Yamada A. Development of microsatellite markers from an ectomycorrhizal fungus, Tricholoma matsutake, by an ISSR-suppression-PCR method. Mycorrhiza. 13:2003;27-31.
16. Martin S.L., Blackmon B.P., Rajagopalan R., Houfek T.D., Sceeles R.G., Denn S.O., Mitchell T.K., Brown D.E., Wing R.A., Dean R.A. MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea. Nucleic Acids Res. 1:2002;121-124.
17. Nitta N., Farman M., Leong S.A. Genome organization of Magnaporthe grisea: integration of genetic maps, clustering of transposable elements, and identification of genome duplications and rearrangements. Theor. Appl. Genet. 95:1997;20-32.
18. Ou S.H. Rice Diseases. second ed. 1985;Commonwealth Mycological Institute, Kew, Surrey, UK.
19. Perez M.A., Gallego F.J., Hidalgo P. Evaluation of molecular techniques for the genetic characterization of Saccharomyces cerevisiae strains. FEMS Microbiol. Lett. 205:2001;375-378.
20. Romao J., Hamer J.E. Genetic organization of a repeated DNA sequence family in the rice blast fungus. Proc. Natl. Acad. Sci. USA. 89:1992;5316-5320.
21. Saghai Maroof M.A., Biyashev R.M., Yang G., Zhang Q., Allard R.W. Extraordinarily polymorphic microsatellite DNA in barley: species diversity, chromosomal locations, and population dynamics. Proc. Natl. Acad. Sci. USA. 91:1994;5466-5470.
22. Scott K.D., Eggler P., Seaton G., Rosetto M., Ablett E.M., Lee L.S., Henry R.J. Analysis of SSRs derived from grape ESTs. Theor. Appl. Genet. 100:2000;723-726.
23. Sirjusingh C., Kohn L.M. Characterization of microsatellites in the fungal plant pathogen, Sclerotinia sclerotiorum. Mol. Ecol. Notes. 1:2001;267-269.
24. Skinner D.Z., Budde A.D., Farman M.L., Leung H., Leong S.A. Genome organization of Magnaporthe grisea: genetic map, electrophoretic karyotype, and occurrence of repeated DNAs. Theor. Appl. Genet. 87:1993;545-557.
25. Soanes R., Skinner W., Keon J., Hargreaves J., Talbot N.J. Genomics of phytopathogenic fungi and the development of bioinformatic resources. Mol. Plant-Microbe Interact. 15:2002;421-427.
26. Smith J.R., Leong S.A. Mapping of a Magnaporthe grisea locus affecting rice (Oryza sativa) cultivar specificity. Theor. Appl. Genet. 88:1994;901-908.
27. Sweigard J.A., Orbach M.J., Valent B., Chumley F.G. A miniprep procedure for isolating genimic DNA from Magnaporthe grisea. Fungal Genet. Newslett. 37:1990;4.
28. Sweigard J.A., Valent B., Orbach M.J., Walter A.M., Rafalski A., Chumley F.G. Genetic map of the rice blast fungus Magnaporthe grisea. O'Brien S.J. Genetic Maps. sixth ed. 1993;3.112-3.115 Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
29. Valent B. Rice blast as a model system for plant pathology. Phytopathology. 80:1990;33-36.
30. Zhu H., Blackmon B.P., Sasinowski M., Dean R. Physical map of chromosome 7 in the rice blast fungus, Magnaporthe grisea. Genome Res. 9:1999;739-750.
31. Zhu H., Choi S., Johnston A.K., Wing R.A., Dean R.A. A large insert (130. kbp) bacterial artificial chromosome (BAC) library of the rice blast fungus Magnaporthe grisea: genome analysis, contig assembly and gene cloning Fungal Genet. Biol. 21:1997;337-347.