메뉴 건너뛰기




Volumn 98, Issue 5, 1999, Pages 780-792

Inter-simple sequence repeat (ISSR) amplification for analysis of microsatellite motif frequency and fingerprinting in rice (Oryza sativa L.)

Author keywords

DNA fingerprinting; Genome analysis; Inter simple sequence repeats (ISSR); Microsatellite motif frequency; Rice (Oryza sativa)

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; CLUSTER ANALYSIS; CULTIVAR IDENTIFICATION; CULTIVAR; DNA FINGERPRINTING; GENETIC DIVERSITY; GENETIC MARKER; GENOTYPE; GERMPLASM; INTER SIMPLE SEQUENCE REPEAT AMPLIFICATION; ISOENZYME; MICROSATELLITE DNA; PLANT GENOME; REPETITIVE DNA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

EID: 0344848555     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220051135     Document Type: Article
Times cited : (347)

References (40)
  • 2
    • 0030410957 scopus 로고    scopus 로고
    • A co-dominant DNA marker closely linked to the rice nuclear restorer gene, Rf-1, identified with inter-SSR fingerprinting
    • Akagi H, Yokozeki Y, Inagaki A, Nakamura A, Fujimura T (1996b) A co-dominant DNA marker closely linked to the rice nuclear restorer gene, Rf-1, identified with inter-SSR fingerprinting. Genome 39:1205-1209
    • (1996) Genome , vol.39 , pp. 1205-1209
    • Akagi, H.1    Yokozeki, Y.2    Inagaki, A.3    Nakamura, A.4    Fujimura, T.5
  • 3
    • 0031018376 scopus 로고    scopus 로고
    • Highly polymorphic microsatellites of rice consist of AT repeats, and a classification of closely related cultivars with these microsatellite loci
    • Akagi H, Yokozeki Y, Inagaki A, Fujimura T (1997) Highly polymorphic microsatellites of rice consist of AT repeats, and a classification of closely related cultivars with these microsatellite loci. Theor Appl Genet 94:61-67
    • (1997) Theor Appl Genet , vol.94 , pp. 61-67
    • Akagi, H.1    Yokozeki, Y.2    Inagaki, A.3    Fujimura, T.4
  • 5
    • 0029788008 scopus 로고    scopus 로고
    • PCR analysis of oilseed rape cultivars (Brassica napus L. ssp. oleifera) using 5′ anchored simple sequence repeat (SSR) primers
    • Charters YM, Robertson A, Wilkinson MJ, Ramsay G (1996) PCR analysis of oilseed rape cultivars (Brassica napus L. ssp. oleifera) using 5′ anchored simple sequence repeat (SSR) primers. Theor Appl Genet 92:442-447
    • (1996) Theor Appl Genet , vol.92 , pp. 442-447
    • Charters, Y.M.1    Robertson, A.2    Wilkinson, M.J.3    Ramsay, G.4
  • 6
    • 0030827321 scopus 로고    scopus 로고
    • Development of a microsatellite framework map providing genomewide coverage in rice (Oryza sativa L.)
    • Chen X, Temnykh S, Xu Y, Cho YG, McCouch SR (1997) Development of a microsatellite framework map providing genomewide coverage in rice (Oryza sativa L.). Theor Appl Genet 95:553-567
    • (1997) Theor Appl Genet , vol.95 , pp. 553-567
    • Chen, X.1    Temnykh, S.2    Xu, Y.3    Cho, Y.G.4    McCouch, S.R.5
  • 7
    • 0030113213 scopus 로고    scopus 로고
    • Cloning and mapping of variety-specific rice genomic DNA sequences: Amplified fragment length polymorphisms (AFLP) from silver stained polyacrylamide gels
    • Cho YG, Blair MW, Panaud O, McCouch SR (1996) Cloning and mapping of variety-specific rice genomic DNA sequences: amplified fragment length polymorphisms (AFLP) from silver stained polyacrylamide gels. Genome 39:373-378
    • (1996) Genome , vol.39 , pp. 373-378
    • Cho, Y.G.1    Blair, M.W.2    Panaud, O.3    McCouch, S.R.4
  • 8
    • 0031754564 scopus 로고    scopus 로고
    • Integrated map of AFLP, SSLP and RFLP markers using a recombinant inbred population of rice (Oryza sativa L.)
    • Cho YG, McCouch SR, Kuiper SR, Pot J, Kang MR, Groenen JTM, Eun MY (1997) Integrated map of AFLP, SSLP and RFLP markers using a recombinant inbred population of rice (Oryza sativa L.). Theor Appl Genet 97:370-380
    • (1997) Theor Appl Genet , vol.97 , pp. 370-380
    • Cho, Y.G.1    McCouch, S.R.2    Kuiper, S.R.3    Pot, J.4    Kang, M.R.5    Groenen, J.T.M.6    Eun, M.Y.7
  • 10
    • 34249763755 scopus 로고
    • Characterization of highly variable (GA/CT)n microsatellites in burr oak, quercus macrocarpa
    • Dow BD, Ashley MV, Howe HF (1995) Characterization of highly variable (GA/CT)n microsatellites in burr oak, Quercus macrocarpa. Theor Appl Genet 91:137-141
    • (1995) Theor Appl Genet , vol.91 , pp. 137-141
    • Dow, B.D.1    Ashley, M.V.2    Howe, H.F.3
  • 11
    • 0030762202 scopus 로고    scopus 로고
    • Identification of closely related citrus cultivars with inter-simple sequence repeat markers
    • Fang DQ, Roose ML (1997) Identification of closely related citrus cultivars with inter-simple sequence repeat markers. Theor Appl Genet 95:408-417
    • (1997) Theor Appl Genet , vol.95 , pp. 408-417
    • Fang, D.Q.1    Roose, M.L.2
  • 12
    • 0012368624 scopus 로고
    • Isozymes and classification of Asian rice varieties
    • Glaszmann JC (1987) Isozymes and classification of Asian rice varieties. Theor Appl Genet 42:233-240
    • (1987) Theor Appl Genet , vol.42 , pp. 233-240
    • Glaszmann, J.C.1
  • 13
    • 0030858166 scopus 로고    scopus 로고
    • Application of inter simple sequence repeat (ISSR) markers to plant genetics
    • Goodwin ID, Aitken EAB, Smith LW (1997) Application of inter simple sequence repeat (ISSR) markers to plant genetics. Electrophoresis 18:1524-1528
    • (1997) Electrophoresis , vol.18 , pp. 1524-1528
    • Goodwin, I.D.1    Aitken, E.A.B.2    Smith, L.W.3
  • 14
    • 0028311787 scopus 로고
    • Amplification of DNA markers from evolutionarily diverse genomes using single primers of simple-sequence repeats
    • Gupta M, Chyi YS, Romero-Severson J, Owen JL (1994) Amplification of DNA markers from evolutionarily diverse genomes using single primers of simple-sequence repeats. Theor Appl Genet 89:998-1006
    • (1994) Theor Appl Genet , vol.89 , pp. 998-1006
    • Gupta, M.1    Chyi, Y.S.2    Romero-Severson, J.3    Owen, J.L.4
  • 15
    • 0028856637 scopus 로고
    • Nuclear genome differentiation in Asian cultivated rice as revealed by RFLP analysis
    • Ishii T, Brar DS. Second G, Khush GS (1995) Nuclear genome differentiation in Asian cultivated rice as revealed by RFLP analysis. Jpn J Genet 70:643-652
    • (1995) Jpn J Genet , vol.70 , pp. 643-652
    • Ishii, T.1    Brar, D.S.2    Second, G.3    Khush, G.S.4
  • 16
    • 0031238836 scopus 로고    scopus 로고
    • Conservation of rice genetic resources: The role of the International Rice Genebank at IRRI
    • Jackson MT (1997) Conservation of rice genetic resources: the role of the International Rice Genebank at IRRI. Plant Mol Biol 35:61-67
    • (1997) Plant Mol Biol , vol.35 , pp. 61-67
    • Jackson, M.T.1
  • 17
    • 0029189855 scopus 로고
    • Assessment of genetic diversity in dent and popcorn (Zea mays L.) inbred lines using inter-simple sequence repeat (ISSR) amplification
    • Kantety RV, Zeng X, Bennetzen J, Zehr BE (1995) Assessment of genetic diversity in dent and popcorn (Zea mays L.) inbred lines using inter-simple sequence repeat (ISSR) amplification. Mol Breed 1:365-373
    • (1995) Mol Breed , vol.1 , pp. 365-373
    • Kantety, R.V.1    Zeng, X.2    Bennetzen, J.3    Zehr, B.E.4
  • 18
    • 0027285192 scopus 로고
    • The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates
    • Lagercrantz U, Ellegren H, Kakanuga T (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucelic Acids Res 21:1111-1115
    • (1993) Nucelic Acids Res , vol.21 , pp. 1111-1115
    • Lagercrantz, U.1    Ellegren, H.2    Kakanuga, T.3
  • 19
    • 0030471846 scopus 로고    scopus 로고
    • Comparative analysis of genetic diversity in pea assessed by RFLP-and PCR-based methods
    • Lu J, Knox MR, Ambrose MJ, Brown JKM, Ellis THN (1996) Comparative analysis of genetic diversity in pea assessed by RFLP-and PCR-based methods. Theor Appl Genet 93: 1103-1111
    • (1996) Theor Appl Genet , vol.93 , pp. 1103-1111
    • Lu, J.1    Knox, M.R.2    Ambrose, M.J.3    Brown, J.K.M.4    Ellis, T.H.N.5
  • 20
    • 0029106640 scopus 로고
    • Classifying Japonica rice cultivars with RAPD markers
    • Mackill DJ (1995) Classifying Japonica rice cultivars with RAPD markers. Crop Sci 35:889-894
    • (1995) Crop Sci , vol.35 , pp. 889-894
    • Mackill, D.J.1
  • 21
    • 0030268112 scopus 로고    scopus 로고
    • Level of polymorphism and genetic mapping of AFLP markers in rice
    • Mackill DJ, Zhang Z, Redona ED, Colowit PM (1996) Level of polymorphism and genetic mapping of AFLP markers in rice. Genome 39:969-977
    • (1996) Genome , vol.39 , pp. 969-977
    • Mackill, D.J.1    Zhang, Z.2    Redona, E.D.3    Colowit, P.M.4
  • 25
    • 0027357965 scopus 로고
    • Pcr-amplified microsatellite markers in plant genetics
    • Morgante M, Olivieri AM (1993) PCR-amplified microsatellite markers in plant genetics. Plant J 3:175-182
    • (1993) Plant J , vol.3 , pp. 175-182
    • Morgante, M.1    Olivieri, A.M.2
  • 26
    • 0030920044 scopus 로고    scopus 로고
    • Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers
    • Nagaoka T, Ogihara Y (1997) Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor Appl Genet 94:597-602
    • (1997) Theor Appl Genet , vol.94 , pp. 597-602
    • Nagaoka, T.1    Ogihara, Y.2
  • 27
    • 0029557027 scopus 로고
    • Frequency of microsatellite sequences in rice (Oryza sativa L.)
    • Panaud O, Chen X, McCouch SR (1995) Frequency of microsatellite sequences in rice (Oryza sativa L.). Genome 38:1170-1176
    • (1995) Genome , vol.38 , pp. 1170-1176
    • Panaud, O.1    Chen, X.2    McCouch, S.R.3
  • 28
    • 0029954112 scopus 로고    scopus 로고
    • Development of microsatellites and characterization of simple sequence repeat polymorphism in rice (Oryza sativa L.)
    • Panaud O, Chen X, McCouch SR (1996) Development of microsatellites and characterization of simple sequence repeat polymorphism in rice (Oryza sativa L.). Mol Gen Genet 252:597-607
    • (1996) Mol Gen Genet , vol.252 , pp. 597-607
    • Panaud, O.1    Chen, X.2    McCouch, S.R.3
  • 29
    • 0000665753 scopus 로고    scopus 로고
    • Contrasting genetic diversity relationships are revealed in rice (Oryza sativa L.) using different marker types
    • Parsons BJ, Newbury HJ, Jackson MT, Ford-Lloyd BV (1997) Contrasting genetic diversity relationships are revealed in rice (Oryza sativa L.) using different marker types. Mol Breed 3:115-125
    • (1997) Mol Breed , vol.3 , pp. 115-125
    • Parsons, B.J.1    Newbury, H.J.2    Jackson, M.T.3    Ford-Lloyd, B.V.4
  • 30
    • 0028112360 scopus 로고
    • DNA fingerprinting in rice using oligonucleotide probes specific from simple repetitive DNA sequences
    • Ramakishana W, Lagu MD, Gupta VS, Ranjekar PK (1994) DNA fingerprinting in rice using oligonucleotide probes specific from simple repetitive DNA sequences. Theor Appl Genet 88:402-406
    • (1994) Theor Appl Genet , vol.88 , pp. 402-406
    • Ramakishana, W.1    Lagu, M.D.2    Gupta, V.S.3    Ranjekar, P.K.4
  • 32
    • 0029346939 scopus 로고
    • Assessment of genome origins and genetic diversity in the genus Eleusine with DNA markers
    • Salimath SS, De-Oliviera AC, Godwin ID, Bennetzen JL (1995) Assessment of genome origins and genetic diversity in the genus Eleusine with DNA markers. Genome 38:757-763
    • (1995) Genome , vol.38 , pp. 757-763
    • Salimath, S.S.1    De-Oliviera, A.C.2    Godwin, I.D.3    Bennetzen, J.L.4
  • 34
    • 0024952506 scopus 로고
    • Restriction fragment length polymorphism in Oryza sativa L.
    • Wang ZY, Tanksley SD (1989) Restriction fragment length polymorphism in Oryza sativa L. Genome 32:1113-1118
    • (1989) Genome , vol.32 , pp. 1113-1118
    • Wang, Z.Y.1    Tanksley, S.D.2
  • 35
    • 0027519769 scopus 로고
    • Abundance, polymorphism and genetic mapping of microsatellites in rice
    • Wu K, Tanksley SD (1993) Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet 241:225-235
    • (1993) Mol Gen Genet , vol.241 , pp. 225-235
    • Wu, K.1    Tanksley, S.D.2
  • 36
    • 0030484280 scopus 로고    scopus 로고
    • Comparison of DNA marker technologies in characterizing plant genome diversity: Variability in Chinese sorghums
    • Yang W, De-Oliveira AC, Godwin I, Schertz K, Bennetzen JL (1996) Comparison of DNA marker technologies in characterizing plant genome diversity: variability in Chinese sorghums. Crop Sci 36:1669-1676
    • (1996) Crop Sci , vol.36 , pp. 1669-1676
    • Yang, W.1    De-Oliveira, A.C.2    Godwin, I.3    Schertz, K.4    Bennetzen, J.L.5
  • 37
    • 0000848705 scopus 로고
    • Genetic variation detected with RAPD markers among upland and lowland rice cultivars (Oryza sativa L.)
    • Yu LX, Nguyen HT (1994) Genetic variation detected with RAPD markers among upland and lowland rice cultivars (Oryza sativa L.). Theor Appl Genet 87:668-672
    • (1994) Theor Appl Genet , vol.87 , pp. 668-672
    • Yu, L.X.1    Nguyen, H.T.2
  • 38
    • 0000205632 scopus 로고
    • Genetic diversity and differentiation of Indica and Japonica rice detected by RFLP analysis
    • Zhang QF, Maroof MAS, Lu TY, Shen BZ (1992) Genetic diversity and differentiation of Indica and Japonica rice detected by RFLP analysis. Theor Appl Genet 83:495-499
    • (1992) Theor Appl Genet , vol.83 , pp. 495-499
    • Zhang, Q.F.1    Maroof, M.A.S.2    Lu, T.Y.3    Shen, B.Z.4
  • 39
    • 0027137475 scopus 로고
    • Clusters of interspersed repeated DNA sequences in the rice genome (Oryza)
    • Zhao X, Kochert G (1992) Clusters of interspersed repeated DNA sequences in the rice genome (Oryza). Genome 36:944-953
    • (1992) Genome , vol.36 , pp. 944-953
    • Zhao, X.1    Kochert, G.2
  • 40
    • 0028316648 scopus 로고
    • Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification
    • Zietkiewicz E, Rafalski A, Labuda D (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183
    • (1994) Genomics , vol.20 , pp. 176-183
    • Zietkiewicz, E.1    Rafalski, A.2    Labuda, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.