-
1
-
-
0034982018
-
f of Bacillus subtilis by using random-sequence oligonucleotides
-
DOI 10.1128/JB.183.12.3623-3630.2001
-
Amaya, E., Khvorova, A. Piggot, P.J. (2001) Analysis of promoter recognition in vivo directed by sigma(F) of Bacillus subtilis by using random-sequence oligonucleotides. J Bacteriol 183 : 3623 3630. (Pubitemid 32510430)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.12
, pp. 3623-3630
-
-
Amaya, E.1
Khvorova, A.2
Piggot, P.J.3
-
2
-
-
53049110476
-
Structural modules of RNA polymerase required for transcription from promoters containing downstream basal promoter element GGGA
-
Barinova, N., Kuznedelov, K., Severinov, K. Kulbachinskiy, A. (2008) Structural modules of RNA polymerase required for transcription from promoters containing downstream basal promoter element GGGA. J Biol Chem 283 : 22482 22489.
-
(2008)
J Biol Chem
, vol.283
, pp. 22482-22489
-
-
Barinova, N.1
Kuznedelov, K.2
Severinov, K.3
Kulbachinskiy, A.4
-
3
-
-
0030965301
-
70 subunit is responsible for the recognition of the 'extended -10' motif at promoters
-
DOI 10.1093/emboj/16.13.4034
-
Barne, K.A., Bown, J.A., Busby, S.J. Minchin, S.D. (1997) Region 2.5 of the Escherichia coli RNA polymerase sigma70 subunit is responsible for the recognition of the 'extended-10' motif at promoters. EMBO J 16 : 4034 4040. (Pubitemid 27281018)
-
(1997)
EMBO Journal
, vol.16
, Issue.13
, pp. 4034-4040
-
-
Barne, K.A.1
Bown, J.A.2
Busby, S.J.W.3
Minchin, S.D.4
-
4
-
-
0031980128
-
Identification and analysis of 'extended - 10' promoters from mycobacteria
-
Bashyam, M.D. Tyagi, A.K. (1998) Identification and analysis of 'extended -10' promoters from mycobacteria. J Bacteriol 180 : 2568 2573. (Pubitemid 28217376)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.9
, pp. 2568-2573
-
-
Bashyam, M.D.1
Tyagi, A.K.2
-
5
-
-
0035107351
-
s
-
DOI 10.1046/j.1365-2958.2001.02313.x
-
Becker, G. Hengge-Aronis, R. (2001) What makes an Escherichia coli promoter sigma(S) dependent? Role of the -13/-14 nucleotide promoter positions and region 2.5 of sigma(S). Mol Microbiol 39 : 1153 1165. (Pubitemid 32225127)
-
(2001)
Molecular Microbiology
, vol.39
, Issue.5
, pp. 1153-1165
-
-
Becker, G.1
Hengge-Aronis, R.2
-
6
-
-
0036720121
-
Genome-wide analysis of the stationary-phase sigma factor (sigma-H) regulon of Bacillus subtilis
-
Britton, R.A., Eichenberger, P., Gonzalez-Pastor, J.E., Fawcett, P., Monson, R., Losick, R. Grossman, A.D. (2002) Genome-wide analysis of the stationary-phase sigma factor (sigma-H) regulon of Bacillus subtilis. J Bacteriol 184 : 4881 4890.
-
(2002)
J Bacteriol
, vol.184
, pp. 4881-4890
-
-
Britton, R.A.1
Eichenberger, P.2
Gonzalez-Pastor, J.E.3
Fawcett, P.4
Monson, R.5
Losick, R.6
Grossman, A.D.7
-
7
-
-
0036203066
-
Structure of the bacterial RNA polymerase promoter specificity σ subunit
-
DOI 10.1016/S1097-2765(02)00470-7
-
Campbell, E.A., Muzzin, O., Chlenov, M., Sun, J.L., Olson, C.A., Weinman, O., et al. (2002) Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 9 : 527 539. (Pubitemid 34273784)
-
(2002)
Molecular Cell
, vol.9
, Issue.3
, pp. 527-539
-
-
Campbell, E.A.1
Muzzin, O.2
Chlenov, M.3
Sun, J.L.4
Olson C.Anders5
Weinman, O.6
Trester-Zedlitz, M.L.7
Darst, S.A.8
-
8
-
-
2142738304
-
WebLogo: A sequence logo generator
-
DOI 10.1101/gr.849004
-
Crooks, G.E., Hon, G., Chandonia, J.M. Brenner, S.E. (2004) WebLogo: a sequence logo generator. Genome Res 14 : 1188 1190. (Pubitemid 38811555)
-
(2004)
Genome Research
, vol.14
, Issue.6
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.-M.3
Brenner, S.E.4
-
9
-
-
0025175708
-
Two amino acids in an RNA polymerase σ factor involved in the recognition of adjacent base pairs in the -10 region of a cognate promoter
-
Daniels, D., Zuber, P. Losick, R. (1990) Two amino acids in an RNA polymerase sigma factor involved in the recognition of adjacent base pairs in the -10 region of a cognate promoter. Proc Natl Acad Sci U S A 87 : 8075 8079. (Pubitemid 20351656)
-
(1990)
Proceedings of the National Academy of Sciences of the United States of America
, vol.87
, Issue.20
, pp. 8075-8079
-
-
Daniels, D.1
Zuber, P.2
Losick, R.3
-
10
-
-
0026442204
-
Genetic suppression analysis of sigma e interaction with three promoters in sporulating Bacillus subtilis
-
Jr
-
Diederich, B., Tatti, K.M., Jones, C.H., Beall B. Moran, C.P., Jr (1992) Genetic suppression analysis of sigma E interaction with three promoters in sporulating Bacillus subtilis. Gene 121 : 63 69.
-
(1992)
Gene
, vol.121
, pp. 63-69
-
-
Diederich, B.1
Tatti, K.M.2
Jones, C.H.3
Beall, B.4
Moran, C.P.5
-
12
-
-
0021173913
-
Mutations that alter the DNA sequence specificity of the catabolite gene activator protein of E. coli
-
Ebright, R.H., Cossart, P., Gicquel-Sanzey, B. Beckwith, J. (1984) Mutations that alter the DNA sequence specificity of the catabolite gene activator protein of E. coli. Nature 311 : 232 235. (Pubitemid 14071138)
-
(1984)
Nature
, vol.311
, Issue.5983
, pp. 232-235
-
-
Ebright, R.H.1
Cossart, P.2
Gicquel-Sanzey, B.3
Beckwith, J.4
-
13
-
-
0037432566
-
e regulon and the identification of additional sporulation genes in Bacillus subtilis
-
DOI 10.1016/S0022-2836(03)00205-5
-
Eichenberger, P., Jensen, S.T., Conlon, E.M., van Ooij, C., Silvaggi, J., Gonzalez-Pastor, J.E., et al. (2003) The sigmaE regulon and the identification of additional sporulation genes in Bacillus subtilis. J Mol Biol 327 : 945 972. (Pubitemid 36363704)
-
(2003)
Journal of Molecular Biology
, vol.327
, Issue.5
, pp. 945-972
-
-
Eichenberger, P.1
Jensen, S.T.2
Conlon, E.M.3
Van Ooij, C.4
Silvaggi, J.5
Gonzalez-Pastor, J.-E.6
Fujita, M.7
Ben-Yehuda, S.8
Stragier, P.9
Liu, J.S.10
Losick, R.11
-
14
-
-
33745485665
-
A Basal Promoter Element Recognized by Free RNA Polymerase σ Subunit Determines Promoter Recognition by RNA Polymerase Holoenzyme
-
DOI 10.1016/j.molcel.2006.06.010, PII S1097276506004175
-
Feklistov, A., Barinova, N., Sevostyanova, A., Heyduk, E., Bass, I., Vvedenskaya, I., et al. (2006) A basal promoter element recognized by free RNA polymerase sigma subunit determines promoter recognition by RNA polymerase holoenzyme. Mol Cell 23 : 97 107. (Pubitemid 43963452)
-
(2006)
Molecular Cell
, vol.23
, Issue.1
, pp. 97-107
-
-
Feklistov, A.1
Barinova, N.2
Sevostyanova, A.3
Heyduk, E.4
Bass, I.5
Vvedenskaya, I.6
Kuznedelov, K.7
Merkiene, E.8
Stavrovskaya, E.9
Klimasauskas, S.10
Nikiforov, V.11
Heyduk, T.12
Severinov, K.13
Kulbachinskiy, A.14
-
15
-
-
0034161515
-
Escherichia coli promoter opening and -10 recognition: Mutational analysis of σ70
-
Fenton, M.S., Lee, S.J. Gralla, J.D. (2000) Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70. EMBO J 19 : 1130 1137. (Pubitemid 30119837)
-
(2000)
EMBO Journal
, vol.19
, Issue.5
, pp. 1130-1137
-
-
Fenton, M.S.1
Lee, S.J.2
Gralla, J.D.3
-
16
-
-
0018333960
-
Identification of the E. coli dnaK (groPC756) gene product
-
DOI 10.1007/BF00268275
-
Georgopoulos, C.P., Lam, B., Lundquist-Heil, A., Rudolph, C.F., Yochem, J. Feiss, M. (1979) Identification of the C. coli dnaK (groPC756) gene product. Mol General Genet 172 : 143 149. (Pubitemid 9229092)
-
(1979)
Molecular and General Genetics
, vol.172
, Issue.2
, pp. 143-149
-
-
Georgopoulos, C.P.1
Lam, B.2
Lundquist-Heil, A.3
-
17
-
-
0033852409
-
UPs and downs in bacterial transcription initiation: The role of the alpha subunit of RNA polymerase in promoter recognition
-
DOI 10.1046/j.1365-2958.2000.01972.x
-
Gourse, R.L., Ross, W. Gaal, T. (2000) UPs and downs in bacterial transcription initiation: the role of the alpha subunit of RNA polymerase in promoter recognition. Mol Microbiol 37 : 687 695. (Pubitemid 30618132)
-
(2000)
Molecular Microbiology
, vol.37
, Issue.4
, pp. 687-695
-
-
Gourse, R.L.1
Ross, W.2
Gaal, T.3
-
18
-
-
0023032320
-
In vivo and in vitro transcription of the Clostridium pasteurianum ferredoxin gene. Evidence for 'extended' promoter elements in Gram-positive organisms
-
Graves, M.C. Rabinowitz, J.C. (1986) In vivo and in vitro transcription of the Clostridium pasteurianum ferredoxin gene. Evidence for 'extended' promoter elements in gram-positive organisms. J Biol Chem 261 : 11409 11415. (Pubitemid 17216752)
-
(1986)
Journal of Biological Chemistry
, vol.261
, Issue.24
, pp. 11409-11415
-
-
Graves, M.C.1
Rabinowitz, J.C.2
-
19
-
-
33748648583
-
II, a second member of the heat shock sigma factor family
-
DOI 10.1128/JB.00405-06
-
Green, H.A. Donohue, T.J. (2006) Activity of Rhodobacter sphaeroides RpoHII, a second member of the heat shock sigma factor family. J Bacteriol 188 : 5712 5721. (Pubitemid 44384079)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.16
, pp. 5712-5721
-
-
Green, H.A.1
Donohue, T.J.2
-
20
-
-
0032459427
-
The functional and regulatory roles of sigma factors in transcription
-
Gross, C.A., Chan, C., Dombroski, A., Gruber, T., Sharp, M., Tupy, J. Young, B. (1998) The functional and regulatory roles of sigma factors in transcription. Cold Spring Harb Symp Quant Biol 63 : 141 155. (Pubitemid 29282158)
-
(1998)
Cold Spring Harbor Symposia on Quantitative Biology
, vol.63
, pp. 141-155
-
-
Gross, C.A.1
Chan, C.2
Dombroski, A.3
Gruber, T.4
Sharp, M.5
Tupy, J.6
Young, B.7
-
21
-
-
0242692671
-
Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space
-
DOI 10.1146/annurev.micro.57.030502.090913
-
Gruber, T.M. Gross, C.A. (2003) Multiple sigma subunits and the partitioning of bacterial transcription space. Annu Rev Microbiol 57 : 441 466. (Pubitemid 37392951)
-
(2003)
Annual Review of Microbiology
, vol.57
, pp. 441-466
-
-
Gruber, T.M.1
Gross, C.A.2
-
22
-
-
8644290874
-
A chaperone network controls the heat shock response in E. coli
-
DOI 10.1101/gad.1219204
-
Guisbert, E., Herman, C., Lu, C.Z. Gross, C.A. (2004) A chaperone network controls the heat shock response in E. coli. Genes Dev 18 : 2812 2821. (Pubitemid 39507773)
-
(2004)
Genes and Development
, vol.18
, Issue.22
, pp. 2812-2821
-
-
Guisbert, E.1
Herman, C.2
Lu, C.Z.3
Gross, C.A.4
-
23
-
-
51949087754
-
Convergence of molecular, modeling, and systems approaches for an understanding of the Escherichia coli heat shock response
-
Guisbert, E., Yura, T., Rhodius, V.A. Gross, C.A. (2008) Convergence of molecular, modeling, and systems approaches for an understanding of the Escherichia coli heat shock response. Microbiol Mol Biol Rev 72 : 545 554.
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, pp. 545-554
-
-
Guisbert, E.1
Yura, T.2
Rhodius, V.A.3
Gross, C.A.4
-
24
-
-
33744981130
-
RRNA Promoter Regulation by Nonoptimal Binding of σ Region 1.2: An Additional Recognition Element for RNA Polymerase
-
DOI 10.1016/j.cell.2006.04.034, PII S0092867406005836
-
Haugen, S.P., Berkmen, M.B., Ross, W., Gaal, T., Ward, C. Gourse, R.L. (2006) rRNA promoter regulation by nonoptimal binding of sigma region 1.2: an additional recognition element for RNA polymerase. Cell 125 : 1069 1082. (Pubitemid 43866199)
-
(2006)
Cell
, vol.125
, Issue.6
, pp. 1069-1082
-
-
Haugen, S.P.1
Berkmen, M.B.2
Ross, W.3
Gaal, T.4
Ward, C.5
Gourse, R.L.6
-
25
-
-
0029041524
-
Compilation and analysis of Bacillus subtilis sigma A-dependent promoter sequences: Evidence for extended contact between RNA polymerase and upstream promoter DNA
-
Helmann, J.D. (1995) Compilation and analysis of Bacillus subtilis sigma A-dependent promoter sequences: evidence for extended contact between RNA polymerase and upstream promoter DNA. Nucl Acids Res 23 : 2351 2360.
-
(1995)
Nucl Acids Res
, vol.23
, pp. 2351-2360
-
-
Helmann, J.D.1
-
26
-
-
18344418394
-
Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners
-
DOI 10.1021/bi990206g
-
Helmann, J.D. deHaseth, P.L. (1999) Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners. Biochemistry 38 : 5959 5967. (Pubitemid 29230211)
-
(1999)
Biochemistry
, vol.38
, Issue.19
, pp. 5959-5967
-
-
Helmann, J.D.1
Dehaseth, P.L.2
-
27
-
-
0022461985
-
Homologous interactions of λ repressor and λ Cro with the λ operator
-
Hochschild, A. Ptashne, M. (1986) Homologous interactions of lambda repressor and lambda Cro with the lambda operator. Cell 44 : 925 933. (Pubitemid 16045338)
-
(1986)
Cell
, vol.44
, Issue.6
, pp. 925-933
-
-
Hochschild, A.1
Ptashne, M.2
-
28
-
-
0022869293
-
How λ repressor and λ Cro distinguish between O(R)1 and O(R)3
-
Hochschild, A., Douhan, J., 3rd, Ptashne, M. (1986) How lambda repressor and lambda Cro distinguish between OR1 and OR3. Cell 47 : 807 816. (Pubitemid 17011424)
-
(1986)
Cell
, vol.47
, Issue.5
, pp. 807-816
-
-
Hochschild, A.1
Douhan Iii, J.2
Ptashne, M.3
-
29
-
-
0017406740
-
Isolation of spontaneously derived mutants of Caulobacter crescentus
-
Johnson, R.C. Ely, B. (1977) Isolation of spontaneously derived mutants of Caulobacter crescentus. Genetics 86 : 25 32. (Pubitemid 8127921)
-
(1977)
Genetics
, vol.86
, Issue.1
, pp. 25-32
-
-
Johnson, R.C.1
Ely, B.2
-
30
-
-
0031885524
-
32 determine core RNA polymerase binding specificity
-
Joo, D.M., Nolte, A., Calendar, R., Zhou, Y.N. Jin, D.J. (1998) Multiple regions on the Escherichia coli heat shock transcription factor sigma32 determine core RNA polymerase binding specificity. J Bacteriol 180 : 1095 1102. (Pubitemid 28119465)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.5
, pp. 1095-1102
-
-
Joo, D.M.1
Nolte, A.2
Calendar, R.3
Zhou, Y.N.4
Jin, D.J.5
-
31
-
-
25144432264
-
Mutational analysis of Escherichia coli heat shock transcription factor sigma 32 reveals similarities with sigma 70 in recognition of the -35 promoter element and differences in promoter DNA melting and -10 recognition
-
DOI 10.1128/JB.187.19.6762-6769.2005
-
Kourennaia, O.V., Tsujikawa, L. Dehaseth, P.L. (2005) Mutational analysis of Escherichia coli heat shock transcription factor sigma 32 reveals similarities with sigma 70 in recognition of the -35 promoter element and differences in promoter DNA melting and -10 recognition. J Bacteriol 187 : 6762 6769. (Pubitemid 41356250)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.19
, pp. 6762-6769
-
-
Kourennaia, O.V.1
Tsujikawa, L.2
Dehaseth, P.L.3
-
32
-
-
0027295666
-
The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an 'extended minus 10' promoter
-
DOI 10.1006/jmbi.1993.1400
-
Kumar, A., Malloch, R.A., Fujita, N., Smillie, D.A., Ishihama, A. Hayward, R.S. (1993) The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an 'extended minus 10' promoter. J Mol Biol 232 : 406 418. (Pubitemid 23251169)
-
(1993)
Journal of Molecular Biology
, vol.232
, Issue.2
, pp. 406-418
-
-
Kumar, A.1
Malloch, R.A.2
Fujita, N.3
Smillie, D.A.4
Ishihama, A.5
Hayward, R.S.6
-
33
-
-
0024051671
-
Heat shock protein GroE of Escherichia coli: Key protective roles against thermal stress
-
Kusukawa, N. Yura, T. (1988) Heat shock protein GroE of Escherichia coli: key protective roles against thermal stress. Genes Dev 2 : 874 882.
-
(1988)
Genes Dev
, vol.2
, pp. 874-882
-
-
Kusukawa, N.1
Yura, T.2
-
34
-
-
0026612797
-
The sigma 70 family: Sequence conservation and evolutionary relationships
-
Lonetto, M., Gribskov, M. Gross, C.A. (1992) The sigma 70 family: sequence conservation and evolutionary relationships. J Bacteriol 174 : 3843 3849.
-
(1992)
J Bacteriol
, vol.174
, pp. 3843-3849
-
-
Lonetto, M.1
Gribskov, M.2
Gross, C.A.3
-
35
-
-
0035393302
-
Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level
-
Luscombe, N.M., Laskowski, R.A. Thornton, J.M. (2001) Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level. Nucl Acids Res 29 : 2860 2874. (Pubitemid 32685051)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.13
, pp. 2860-2874
-
-
Luscombe, N.M.1
Laskowski, R.A.2
Thornton, J.M.3
-
36
-
-
34249708917
-
High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons
-
DOI 10.1038/nbt1294, PII NBT1294
-
McGrath, P.T., Lee, H., Zhang, L., Iniesta, A.A., Hottes, A.K., Tan, M.H., et al. (2007) High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons. Nat Biotechnol 25 : 584 592. (Pubitemid 46838746)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.5
, pp. 584-592
-
-
McGrath, P.T.1
Lee, H.2
Zhang, L.3
Iniesta, A.A.4
Hottes, A.K.5
Tan, M.H.6
Hillson, N.J.7
Hu, P.8
Shapiro, L.9
McAdams, H.H.10
-
37
-
-
2642659387
-
GroE is vital for cell-wall synthesis
-
DOI 10.1038/32317
-
McLennan, N. Masters, M (1998) GroE is vital for cell-wall synthesis. Nature 392 : 139. (Pubitemid 28162772)
-
(1998)
Nature
, vol.392
, Issue.6672
, pp. 139
-
-
McLennan, N.1
Masters, M.2
-
38
-
-
0003785155
-
-
Cold Spring Harbor, NY. Cold Spring Harbor Laboratory Press.
-
Miller, J.H. (1972) Experiments in Molecular Genetics. Cold Spring Harbor, NY : Cold Spring Harbor Laboratory Press.
-
(1972)
Experiments in Molecular Genetics.
-
-
Miller, J.H.1
-
39
-
-
0043032660
-
70 region 4.2 and α-subunit C-terminal domains in promoter complex formation on the extended -10 galP1 promoter
-
DOI 10.1074/jbc.M304906200
-
Minakhin, L. Severinov, K. (2003) On the role of the Escherichia coli RNA polymerase sigma 70 region 4.2 and alpha-subunit C-terminal domains in promoter complex formation on the extended -10 galP1 promoter. J Biol Chem 278 : 29710 29718. (Pubitemid 36962357)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.32
, pp. 29710-29718
-
-
Minakhin, L.1
Severinov, K.2
-
40
-
-
33646828924
-
Investigations of the modular structure of bacterial promoters
-
Miroslavova, N.S. Busby, S.J. (2006) Investigations of the modular structure of bacterial promoters. Biochem Soc Symp 73 : 1 10.
-
(2006)
Biochem Soc Symp
, vol.73
, pp. 1-10
-
-
Miroslavova, N.S.1
Busby, S.J.2
-
41
-
-
0141605202
-
Identification and analysis of 'extended -10' promoters in Escherichia coli
-
DOI 10.1093/nar/gkg694
-
Mitchell, J.E., Zheng, D., Busby, S.J. Minchin, S.D. (2003) Identification and analysis of 'extended -10' promoters in Escherichia coli. Nucl Acids Res 31 : 4689 4695. (Pubitemid 37441830)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.16
, pp. 4689-4695
-
-
Mitchell, J.E.1
Zheng, D.2
Busby, S.J.W.3
Minchin, S.D.4
-
42
-
-
0037123659
-
Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution
-
DOI 10.1126/science.1069594
-
Murakami, K.S., Masuda, S. Darst, S.A. (2002) Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution. Science 296 : 1280 1284. (Pubitemid 34522777)
-
(2002)
Science
, vol.296
, Issue.5571
, pp. 1280-1284
-
-
Murakami, K.S.1
Masuda, S.2
Darst, S.A.3
-
43
-
-
0028843890
-
Isolation and sequence analysis of rpoH genes encoding sigma 32 homologs from gram negative bacteria: Conserved mRNA and protein segments for heat shock regulation
-
Nakahigashi, K., Yanagi, H. Yura, T. (1995) Isolation and sequence analysis of rpoH genes encoding sigma 32 homologs from gram negative bacteria: conserved mRNA and protein segments for heat shock regulation. Nucl Acids Res 23 : 4383 4390.
-
(1995)
Nucl Acids Res
, vol.23
, pp. 4383-4390
-
-
Nakahigashi, K.1
Yanagi, H.2
Yura, T.3
-
44
-
-
33745618956
-
32, reveals a multifaceted cellular response to heat stress
-
DOI 10.1101/gad.1428206
-
Nonaka, G., Blankschien, M., Herman, C., Gross, C.A. Rhodius, V.A. (2006) Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Genes Dev 20 : 1776 1789. (Pubitemid 43992886)
-
(2006)
Genes and Development
, vol.20
, Issue.13
, pp. 1776-1789
-
-
Nonaka, G.1
Blankschien, M.2
Herman, C.3
Gross, C.A.4
Rhodius, V.A.5
-
45
-
-
34548153206
-
Crystal structure of the Escherichia coli regulator of sigma70, Rsd, in complex with sigma70 domain 4
-
Patikoglou, G.A., Westblade, L.F., Campbell, E.A., Lamour, V., Lane, W.J. Darst, S.A. (2007) Crystal structure of the Escherichia coli regulator of sigma70, Rsd, in complex with sigma70 domain 4. J Mol Biol 372 : 649 659.
-
(2007)
J Mol Biol
, vol.372
, pp. 649-659
-
-
Patikoglou, G.A.1
Westblade, L.F.2
Campbell, E.A.3
Lamour, V.4
Lane, W.J.5
Darst, S.A.6
-
46
-
-
0034810821
-
Global analysis of the general stress response of Bacillus subtilis
-
DOI 10.1128/JB.183.19.5617-5631.2001
-
Petersohn, A., Brigulla, M., Haas, S., Hoheisel, J.D., Volker, U. Hecker, M. (2001) Global analysis of the general stress response of Bacillus subtilis. J Bacteriol 183 : 5617 5631. (Pubitemid 32898608)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.19
, pp. 5617-5631
-
-
Petersohn, A.1
Brigulla, M.2
Haas, S.3
Hoheisel, J.D.4
Volker, U.5
Heckler, M.6
-
47
-
-
0022996627
-
Transcription initiation at the Escherichia coli galactose operon promoters in the absence of the normal -35 region sequences
-
Ponnambalam, S., Webster, C., Bingham, A. Busby, S. (1986) Transcription initiation at the Escherichia coli galactose operon promoters in the absence of the normal -35 region sequences. J Biol Chem 261 : 16043 16048. (Pubitemid 17202857)
-
(1986)
Journal of Biological Chemistry
, vol.261
, Issue.34
, pp. 16043-16048
-
-
Ponnambalam, S.1
Webster, C.2
Bingham, A.3
Busby, S.4
-
48
-
-
0027761839
-
A third recognition element in bacterial promoters: DNA binding by the α subunit of RNA polymerase
-
Ross, W., Gosink, K.K., Salomon, J., Igarashi, K., Zou, C., Ishihama, A., et al. (1993) A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase. Science 262 : 1407 1413. (Pubitemid 24035059)
-
(1993)
Science
, vol.262
, Issue.5138
, pp. 1407-1413
-
-
Ross, W.1
Gosink, K.K.2
Salomon, J.3
Igarashi, K.4
Zou, C.5
Ishihama, A.6
Severinov, K.7
Gourse, R.L.8
-
49
-
-
0031691355
-
Escherichia coli promoters with up elements of different strengths: Modular structure of bacterial promoters
-
Ross, W., Aiyar, S.E., Salomon, J. Gourse, R.L. (1998) Escherichia coli promoters with UP elements of different strengths: modular structure of bacterial promoters. J Bacteriol 180 : 5375 5383. (Pubitemid 28471534)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.20
, pp. 5375-5383
-
-
Ross, W.1
Aiyar, S.E.2
Salomon, J.3
Gourse, R.L.4
-
50
-
-
0028979280
-
An extended -10 promoter alone directs transcription of the DpnII operon of Streptococcus pneumoniae
-
Sabelnikov, A.G., Greenberg, B. Lacks, S.A. (1995) An extended -10 promoter alone directs transcription of the DpnII operon of Streptococcus pneumoniae. J Mol Biol 250 : 144 155.
-
(1995)
J Mol Biol
, vol.250
, pp. 144-155
-
-
Sabelnikov, A.G.1
Greenberg, B.2
Lacks, S.A.3
-
52
-
-
0038694862
-
70 factor that affect recognition of extended -10 elements at promoters
-
DOI 10.1016/S0014-5793(03)00500-3
-
Sanderson, A., Mitchell, J.E., Minchin, S.D. Busby, S.J. (2003) Substitutions in the Escherichia coli RNA polymerase sigma70 factor that affect recognition of extended -10 elements at promoters. FEBS Lett 544 : 199 205. (Pubitemid 36628062)
-
(2003)
FEBS Letters
, vol.544
, Issue.1-3
, pp. 199-205
-
-
Sanderson, A.1
Mitchell, J.E.2
Minchin, S.D.3
Busby, S.J.W.4
-
53
-
-
1642415938
-
Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses
-
DOI 10.1016/j.gene.2003.12.024, PII S0378111903011661
-
Serizawa, M., Yamamoto, H., Yamaguchi, H., Fujita, Y., Kobayashi, K., Ogasawara, N. Sekiguchi, J. (2004) Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses. Gene 329 : 125 136. (Pubitemid 38366501)
-
(2004)
Gene
, vol.329
, Issue.1-2
, pp. 125-136
-
-
Serizawa, M.1
Yamamoto, H.2
Yamaguchi, H.3
Fujita, Y.4
Kobayashi, K.5
Ogasawara, N.6
Sekiguchi, J.7
-
54
-
-
0032735991
-
The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized
-
Sharp, M.M., Chan, C.L., Lu, C.Z., Marr, M.T., Nechaev, S., Merritt, E.W., et al. (1999) The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized. Genes Dev 13 : 3015 3026.
-
(1999)
Genes Dev
, vol.13
, pp. 3015-3026
-
-
Sharp, M.M.1
Chan, C.L.2
Lu, C.Z.3
Marr, M.T.4
Nechaev, S.5
Merritt, E.W.6
-
55
-
-
0024371540
-
70 subunit of Escherichia coli RNA polymerase
-
DOI 10.1016/0022-2836(89)90568-8
-
Siegele, D.A., Hu, J.C., Walter, W.A. Gross, C.A. (1989) Altered promoter recognition by mutant forms of the sigma 70 subunit of Escherichia coli RNA polymerase. J Mol Biol 206 : 591 603. (Pubitemid 19137415)
-
(1989)
Journal of Molecular Biology
, vol.206
, Issue.4
, pp. 591-603
-
-
Siegele, D.A.1
Hu, J.C.2
Walter, W.A.3
Gross, C.A.4
-
56
-
-
0038500991
-
32 levels in Caulobacter crescentus
-
DOI 10.1046/j.1365-2958.2003.03581.x
-
da Silva, A.C., Simao, R.C., Susin, M.F., Baldini, R.L., Avedissian, M. Gomes, S.L. (2003) Downregulation of the heat shock response is independent of DnaK and sigma32 levels in Caulobacter crescentus. Mol Microbiol 49 : 541 553. (Pubitemid 36851205)
-
(2003)
Molecular Microbiology
, vol.49
, Issue.2
, pp. 541-553
-
-
Da Silva, A.C.A.1
Simao, R.C.G.2
Susin, M.F.3
Baldini, R.L.4
Avedissian, M.5
Gomes, S.L.6
-
57
-
-
1842766125
-
28/FlgM reveals an intact σ factor in an inactive conformation
-
DOI 10.1016/S1097-2765(04)00150-9, PII S1097276504001509
-
Sorenson, M.K., Ray, S.S. Darst, S.A. (2004) Crystal structure of the flagellar sigma/anti-sigma complex sigma(28)/FlgM reveals an intact sigma factor in an inactive conformation. Mol Cell 14 : 127 138. (Pubitemid 38469915)
-
(2004)
Molecular Cell
, vol.14
, Issue.1
, pp. 127-138
-
-
Sorenson, M.K.1
Ray, S.S.2
Darst, S.A.3
-
58
-
-
0025632973
-
32
-
Straus, D., Walter, W. Gross, C.A. (1990) DnaK, DnaJ, and GrpE heat shock proteins negatively regulate heat shock gene expression by controlling the synthesis and stability of sigma 32. Genes Dev 4 : 2202 2209. (Pubitemid 120034525)
-
(1990)
Genes and Development
, vol.4
, Issue.12
, pp. 2202-2209
-
-
Straus, D.1
Walter, W.2
Gross, C.A.3
-
59
-
-
0026325347
-
Genetic evidence for interaction of sigma e with the spoIIID promoter in Bacillus subtilis
-
Jr
-
Tatti, K.M., Jones C.H. Moran C.P., Jr (1991) Genetic evidence for interaction of sigma E with the spoIIID promoter in Bacillus subtilis. J Bacteriol 173 : 7828 7833.
-
(1991)
J Bacteriol
, vol.173
, pp. 7828-7833
-
-
Tatti, K.M.1
Jones, C.H.2
Moran, C.P.3
-
60
-
-
0035943648
-
70 in the Nucleation and Maintenance of the Single-stranded DNA Bubble in Open RNA Polymerase-Promoter Complexes
-
DOI 10.1074/jbc.M105027200
-
Tomsic, M., Tsujikawa, L., Panaghie, G., Wang, Y., Azok, J. deHaseth, P.L. (2001) Different roles for basic and aromatic amino acids in conserved region 2 of Escherichia coli sigma(70) in the nucleation and maintenance of the single-stranded DNA bubble in open RNA polymerase-promoter complexes. J Biol Chem 276 : 31891 31896. (Pubitemid 37384843)
-
(2001)
Journal of Biological Chemistry
, vol.276
, Issue.34
, pp. 31891-31896
-
-
Tomsic, M.1
Tsujikawa, L.2
Panaghie, G.3
Wang, Y.4
Azok, J.5
Dehaseth, P.L.6
-
61
-
-
33748350078
-
Extensive functional overlap between σ factors in Escherichia coli
-
DOI 10.1038/nsmb1130, PII NSMB1130
-
Wade, J.T., Roa, D.C., Grainger, D.C., Hurd, D., Busby, S.J., Struhl, K. Nudler, E. (2006) Extensive functional overlap between sigma factors in Escherichia coli. Nat Struct Mol Biol 13 : 806 814. (Pubitemid 44338775)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.9
, pp. 806-814
-
-
Wade, J.T.1
Roa, D.C.2
Grainger, D.C.3
Hurd, D.4
Busby, S.J.W.5
Struhl, K.6
Nudler, E.7
-
62
-
-
0141615736
-
Sigma 32-dependent promoter activity in vivo: Sequence determinants of the groE promoter
-
DOI 10.1128/JB.185.19.5800-5806.2003
-
Wang, Y. deHaseth, P.L. (2003) Sigma 32-dependent promoter activity in vivo: sequence determinants of the groE promoter. J Bacteriol 185 : 5800 5806. (Pubitemid 37176492)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.19
, pp. 5800-5806
-
-
Wang, Y.1
Dehaseth, P.L.2
-
63
-
-
1442281182
-
Minimal Machinery of RNA Polymerase Holoenzyme Sufficient for Promoter Metting
-
DOI 10.1126/science.1092462
-
Young, B.A., Gruber, T.M. Gross, C.A. (2004) Minimal machinery of RNA polymerase holoenzyme sufficient for promoter melting. Science 303 : 1382 1384. (Pubitemid 38269433)
-
(2004)
Science
, vol.303
, Issue.5662
, pp. 1382-1384
-
-
Young, B.A.1
Gruber, T.H.2
Gross, C.A.3
-
64
-
-
0034705144
-
An efficient recombination system for chromosome engineering in Escherichia coli
-
DOI 10.1073/pnas.100127597
-
Yu, D., Ellis, H.M., Lee, E.C., Jenkins, N.A., Copeland, N.G. Court, D.L. (2000) An efficient recombination system for chromosome engineering in Escherichia coli. Proc Natl Acad Sci U S A 97 : 5978 5983. (Pubitemid 30367509)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.11
, pp. 5978-5983
-
-
Yu, D.1
Ellis, H.M.2
Lee, E.-C.3
Jenkins, N.A.4
Copeland, N.G.5
Court, D.L.6
-
65
-
-
36749102048
-
32 mutants defective in chaperone-mediated feedback control reveals unexpected complexity of the heat shock response
-
DOI 10.1073/pnas.0708819104
-
Yura, T., Guisbert, E., Poritz, M., Lu, C.Z., Campbell, E. Gross, C.A. (2007) Analysis of sigma32 mutants defective in chaperone-mediated feedback control reveals unexpected complexity of the heat shock response. Proc Natl Acad Sci U S A 104 : 17638 17643. (Pubitemid 350210888)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.45
, pp. 17638-17643
-
-
Yura, T.1
Guisbert, E.2
Poritz, M.3
Chi, Z.L.4
Campbell, E.5
Gross, C.A.6
-
66
-
-
24044489239
-
32 in vivo
-
DOI 10.1074/jbc.M500393200
-
Zhao, K., Liu, M. Burgess, R.R. (2005) The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo. J Biol Chem 280 : 17758 17768. (Pubitemid 41389014)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.18
, pp. 17758-17768
-
-
Zhao, K.1
Liu, M.2
Burgess, R.R.3
-
67
-
-
34547851781
-
Adaptation in bacterial flagellar and motility systems: From regulon members to 'foraging'-like behavior in E. coli
-
DOI 10.1093/nar/gkm456
-
Zhao, K., Liu, M. Burgess, R.R. (2007) Adaptation in bacterial flagellar and motility systems: from regulon members to 'foraging'-like behavior in E. coli. Nucl Acids Res 35 : 4441 4452. (Pubitemid 47244595)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.13
, pp. 4441-4452
-
-
Zhao, K.1
Liu, M.2
Burgess, R.R.3
|