Variability in the level of RNA silencing suppression caused by triple gene block protein 1 (TGBp1) from various potexviruses during infection

Journal of General Virology

Volumn 90, Issue 4, 2009, Pages 1014-1024

  Senshu, Hiroko ^a   Ozeki, Johji ^a   Komatsu, Ken ^a   Hashimoto, Masayoshi ^a   Hatada, Kouji ^a   Aoyama, Michiko ^a   Kagiwada, Satoshi ^b   Yamaji, Yasuyuki ^a   Namba, Shigetou ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b HOSEI UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GREEN FLUORESCENT PROTEIN; MICRORNA; SMALL INTERFERING RNA; TRIPLE GENE BLOCK PROTEIN 1; UNCLASSIFIED DRUG; VIRUS PROTEIN; VIRUS RNA;

ARTICLE; CONTROLLED STUDY; GENE SILENCING; GENETIC VARIABILITY; NICOTIANA BENTHAMIANA; NONHUMAN; PLANT; PLANT LEAF; PLANT VIRUS; PLANTAGO ASIATICA MOSAIC VIRUS; POTEXVIRUS; PRIORITY JOURNAL; RHIZOBIUM; SUPPRESSOR GENE; VIRUS GENOME; VIRUS INFECTION; CLASSIFICATION; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PATHOGENICITY; PLANT DISEASE; RNA INTERFERENCE; TOBACCO; TRANSGENE; VIROLOGY;

AGROBACTERIUM; NICOTIANA BENTHAMIANA; PLANTAGO ASIATICA MOSAIC VIRUS; POTEXVIRUS;

GENE EXPRESSION REGULATION; GREEN FLUORESCENT PROTEINS; MICRORNAS; PLANT DISEASES; PLANT LEAVES; POTEXVIRUS; RHIZOBIUM; RNA INTERFERENCE; RNA, SMALL INTERFERING; RNA, VIRAL; TOBACCO; TRANSGENES; VIRAL PROTEINS;

EID: 65549138004     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.008243-0     Document Type: Article

References (54)

1. Angell, S. M. & Baulcombe, D. C. (1999). Technical advance: potato virus X amplicon-mediated silencing of nuclear genes. Plant J 20, 357-362.
2. Axtell, M. J. & Bartel, D. P. (2005). Antiquity of microRNAs and their targets in land plants. Plant Cell 17, 1658-1673.
3. Baulcombe, D. (2004). RNA silencing in plants. Nature 431, 356-363.
4. Baulcombe, D. C., Chapman, S. & Santa Cruz, S. (1995). Jellyfish green fluorescent protein as a reporter for virus infections. Plant J 7, 1045-1053.
5. Baumberger, N., Tsai, C. H., Lie, M., Havecker, E. & Baulcombe, D. C. (2007). The polerovirus silencing suppressor P0 targets ARGONAUTE proteins for degradation. Curr Biol 17, 1609-1614.
6. Bayne, E. H., Rakitina, D. V., Morozov, S. Y. & Baulcombe, D. C. (2005). Cell-to-cell movement of potato potexvirus X is dependent on suppression of RNA silencing. Plant J 44, 471-482.
7. Bernstein, E., Caudy, A. A., Hammond, S. M. & Hannon, G. J. (2001). Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409, 363-366.
8. Bortolamiol, D., Pazhouhandeh, M., Marrocco, K., Genschik, P. & Ziegler-Graff, V. (2007). The polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing. Curr Biol 17, 1615-1621.
9. Brigneti, G., Voinnet, O., Li, W. X., Ji, L. H., Ding, S. W. & Baulcombe, D. C. (1998). Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana. EMBO J 17, 6739-6746.
10. Brodersen, P. & Voinnet, O. (2006). The diversity of RNA silencing pathways in plants. Trends Genet 22, 268-280.
11. Chapman, E. J. & Carrington, J. C. (2007). Specialization and evolution of endogenous small RNA pathways. Nat Rev Genet 8, 884-896.
12. Chapman, E. J., Prokhnevsky, A. I., Gopinath, K., Dolja, V. V. & Carrington, J. C. (2004). Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step. Genes Dev 18, 1179-1186.
13. Chiba, M., Reed, J. C., Prokhnevsky, A. I., Chapman, E. J., Mawassi, M., Koonin, E. V., Carrington, J. C. & Dolja, V. V. (2006). Diverse suppressors of RNA silencing enhance agroinfection by a viral replicon. Virology 346, 7-14.
14. Deleris, A., Gallego-Bartolome, J., Bao, J., Kasschau, K. D., Carrington, J. C. & Voinnet, O. (2006). Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313, 68-71.
15. Ding, S. W. & Voinnet, O. (2007). Antiviral immunity directed by small RNAs. Cell 130, 413-426.
16. Dunoyer, P., Pfeffer, S., Fritsch, C., Hemmer, O., Voinnet, O. & Richards, K. E. (2002). Identification, subcellular localization and some properties of a cysteine-rich suppressor of gene silencing encoded by peanut clump virus. Plant J 29, 555-567.
17. Dunoyer, P., Lecellier, C. H., Parizotto, E. A., Himber, C. & Voinnet, O. (2004). Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing. Plant Cell 16, 1235-1250.
18. Hamilton, A., Voinnet, O., Chappell, L. & Baulcombe, D. (2002). Two classes of short interfering RNA in RNA silencing. EMBO J 21, 4671-4679.
19. Hammond, S. M. (2005). Dicing and slicing: The core machinery of the RNA interference pathway. FEBS Lett 579, 5822-5829.
20. Hashimoto, M., Ozeki, J., Komatsu, K., Senshu, H., Kagiwada, S., Mori, T., Yamaji, Y. & Namba, S. (2008). Complete nucleotide sequence of asparagus virus 3. Arch Virol 153, 219-221.
21. Hughes, P. L., Harper, F., Zimmerman, M. T. & Scott, S. W. (2005). Nandina mosaic virus is an isolate of Plantago asiatica mosaic virus. Eur J Plant Pathol 113, 309-313.
22. Johansen, L. K. & Carrington, J. C. (2001). Silencing on the spot. Induction and suppression of RNA silencing in the Agrobacterium-mediated transient expression system. Plant Physiol 126, 930-938.
23. Komatsu, K., Yamaji, Y., Ozeki, J., Hashimoto, M., Kagiwada, S., Takahashi, S. & Namba, S. (2008). Nucleotide sequence analysis of seven Japanese isolates of Plantago asiatica mosaic virus (PlAMV): a unique potexvirus with significantly high genomic and biological variability within the species. Arch Virol 153, 193-198.
24. Kostin, V. D. & Volkov, Y. (1976). Some properties of the virus affecting Plantago asiatica. Virusnye Bolezni Rastenij Dalnego Vostoka 25, 205-210 (in Russian).
25. Lakatos, L., Szittya, G., Silhavy, D. & Burgyan, J. (2004). Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusviruses. EMBO J 23, 876-884.
26. Lakatos, L., Csorba, T., Pantaleo, V., Chapman, E. J., Carrington, J. C., Liu, Y. P., Dolja, V. V., Calvino, L. F., Lopez-Moya, J. J. & Burgyan, J. (2006). Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO J 25, 2768-2780.
27. Li, F. & Ding, S. W. (2006). Virus counterdefense: Diverse strategies for evading the RNA-silencing immunity. Annu Rev Microbiol 60, 503-531.
28. Mallory, A. C. & Vaucheret, H. (2006). Functions of microRNAs and related small RNAs in plants. Nat Genet 38 (Suppl.), S31-S36.
29. Mallory, A. C., Reinhart, B. J., Bartel, D., Vance, V. B. & Bowman, L. H. (2002). A viral suppressor of RNA silencing differentially regulates the accumulation of short interfering RNAs and micro-RNAs in tobacco. Proc Natl Acad Sci U S A 99, 15228-15233.
30. Merai, Z., Kerenyi, Z., Kertesz, S., Magna, M., Lakatos, L. & Silhavy, D. (2006). Double-stranded RNA binding may be a general plant RNA viral strategy to suppress RNA silencing. J Virol 80, 5747-5756.
31. Mitsuhara, I., Ugaki, M., Hirochika, H., Ohshima, M., Murakami, T., Gotoh, Y., Katayose, Y., Nakamura, S., Honkura, R. & other authors (1996). Efficient promoter cassettes for enhanced expression of foreign genes in dicotyledonous and monocotyledonous plants. Plant Cell Physiol 37, 49-59.
32. Moissiard, G., Parizotto, E. A., Himber, C. & Voinnet, O. (2007). Transitivity in Arabidopsis can be primed, requires the redundant action of the antiviral Dicer-like 4 and Dicer-like 2, and is compromised by viral-encoded suppressor proteins. RNA 13, 1268-1278.
33. Morozov, S. Y. & Solovyev, A. G. (2003). Triple gene block: modular design of a multifunctional machine for plant virus movement. J Gen Virol 84, 1351-1366.
34. Nakabayashi, H., Yamaji, Y., Kagiwada, S., Ugaki, M. & Namba, S. (2002). The complete nucleotide sequence of a Japanese isolate of white clover mosaic virus strain RC. J Gen Plant Pathol 68, 173-176.
35. Ozeki, J., Takahashi, S., Komatsu, K., Kagiwada, S., Yamashita, K., Mori, T., Hirata, H., Yamaji, Y., Ugaki, M. & Namba, S. (2006). A single amino acid in the RNA-dependent RNA polymerase of Plantago asiatica mosaic virus contributes to systemic necrosis. Arch Virol 151, 2067-2075.
36. Pirone, T. P. & Thornbury, D. W. (1983). Role of virion and helper component in regulating aphid transmission of tobacco etch virus. Phytopathology 73, 872-875.
37. Ratcliff, F., Harrison, B. D. & Baulcombe, D. C. (1997). A similarity between viral defense and gene silencing in plants. Science 276, 1558-1560.
38. Silhavy, D., Molnar, A., Lucioli, A., Szittya, G., Hornyik, C., Tavazza, M. & Burgyan, J. (2002). A viral protein suppresses RNA silencing and binds silencing-generated, 21- to 25-nucleotide double-stranded RNAs. EMBO J 21, 3070-3080.
39. Solovyev, A. G., Novikov, V. K., Merits, A., Savenkov, E. I., Zelenina, D. A., Tyulkina, L. G. & Morozov, S. Yu. (1994). Genome characterization and taxonomy of Plantago asiatica mosaic potex-virus. J Gen Virol 75, 259-267.
40. Suzuki, M., Kuwata, S., Kataoka, J., Masuta, C., Nitta, N. & Takanami, Y. (1991). Functional analysis of deletion mutants of cucumber mosaic virus RNA3 using an in vitro transcription system. Virology 183, 106-113.
41. Takahashi, S., Komatsu, K., Kagiwada, S., Ozeki, J., Mori, T., Hirata, H., Yamaji, Y., Ugaki, M. & Namba, S. (2006). The efficiency of interference of potato virus X infection depends on the target gene. Virus Res 116, 214-217.
42. Vance, V. & Vaucheret, H. (2001). RNA silencing in plants - defense and counterdefense. Science 292, 2277-2280.
43. Vargason, J. M., Szittya, G., Burgyan, J. & Hall, T. M. (2003). Size selective recognition of siRNA by an RNA silencing suppressor. Cell 115, 799-811.
44. Verchot-Lubicz, J. (2005). A new cell-to-cell transport model for potexviruses. Mol Plant Microbe Interact 18, 283-290.
45. Verchot-Lubicz, J., Ye, C. M. & Bamunusinghe, D. (2007). Molecular biology of potexviruses: Recent advances. J Gen Virol 88, 1643-1655.
46. Voinnet, O. (2005). Induction and suppression of RNA silencing: insights from viral infections. Nat Rev Genet 6, 206-220.
47. Voinnet, O., Pinto, Y. M. & Baulcombe, D. C. (1999). Suppression of gene silencing: A general strategy used by diverse DNA and RNA viruses of plants. Proc Natl Acad Sci U S A 96, 14147-14152.
48. Voinnet, O., Lederer, C. & Baulcombe, D. C. (2000). A viral movement protein prevents spread of the gene silencing signal in Nicotiana benthamiana. Cell 103, 157-167.
49. Xie, Z., Johansen, L. K., Gustafson, A. M., Kasschau, K. D., Lellis, A. D., Zilberman, D., Jacobsen, S. E. & Carrington, J. C. (2004). Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2, E104.
50. Yamaji, Y., Kagiwada, S., Nakabayashi, H., Ugaki, M. & Namba, S. (2001). Complete nucleotide sequence of tulip virus X (TVX-J): The border between species and strains within the genus Potexvirus. Arch Virol 146, 2309-2320.
51. Yamaji, Y., Kobayashi, T., Hamada, K., Sakurai, K., Yoshii, A., Suzuki, M., Namba, S. & Hibi, T. (2006). In vivo interaction between tobacco mosaic virus RNA-dependent RNA polymerase and host translation elongation factor 1A. Virology 347, 100-108.
52. Ye, K., Malinina, L. & Patel, D. J. (2003). Recognition of small interfering RNA by a viral suppressor of RNA silencing. Nature 426, 874-878.
53. Yelina, N. E., Savenkov, E. I., Solovyev, A. G., Morozov, S. Y. & Valkonen, J. P. (2002). Long-distance movement, virulence, and RNA silencing suppression controlled by a single protein in hordei- and potyviruses: Complementary functions between virus families. J Virol 76, 12981-12991.
54. Zhang, X., Yuan, Y. R., Pei, Y., Lin, S. S., Tuschl, T., Patel, D. J. & Chua, N. H. (2006). Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes Dev 20, 3255-3268.