Towards quantitative prediction of proteasomal digestion patterns of proteins

Journal of Statistical Mechanics: Theory and Experiment

Volumn 2009, Issue 1, 2009, Pages

  Goldobin, Denis S ^a,b   Zaikin, Alexey ^c,d  

^a UNIVERSITY OF POTSDAM   (Germany)

^b PERM STATE UNIVERSITY   (Russian Federation)

^c UNIVERSITY OF ESSEX   (United Kingdom)

^d UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Molecular networks (theory); Protein function and design (theory); Regulatory networks (theory)

Indexed keywords

EID: 65449182391     PISSN: 17425468     EISSN: 17425468     Source Type: Journal    
DOI: 10.1088/1742-5468/2009/01/P01009     Document Type: Article

References (21)

1. Rock K L, Gramm C, Rothstein L, Clark K, Stein R, Dick L, Hwang D and Goldberg A L 1994 Cell 78 761
2. Kloetzel P M 2001 Nat. Rev. Mol. Cell. Biol. 2 179
3. Tanahashi N, Murakami Y, Minami Y, Shimbara N, Hendil K B and Tanaka K 2000 J. Biol. Chem. 275 14336
4. Rubinsztein D C 2006 Nature 443 780
5. Mishto M, Bellavista E, Santoro A and Franceschi C 2007 Central Nervous System Agents in Medicinal Chemistry 7 236
6. Holzhütter H G and Kloetzel P M 2000 Biophys. J. 79 1196
7. Peters B, Janek K, Kuckelkorn U and Holzhütter H G 2002 J. Mol. Biol. 318 847
8. Luciani F, Kesmir C, Mishto M, Or-Guil M and de Boer R J 2005 Biophys. J. 88 2422
9. Zaikin A and Pöschel T 2005 Europhys. Lett. 69 725
10. Goldobin D S, Mishto M, Textoris-Taube K, Kloetzel P M and Zaikin A 2008 Reverse engineering of proteasomal translocation rates Preprint 0804.0682 submitted
11. Witt S 2007 private communication
12. Reimann P, Van den Broeck C, Linke H, Hänggi P, Rubi J M and Perez-Madrid A 2001 Phys. Rev. Lett. 87 010602
13. Tenzer S, Peters B, Bulik S, Schoor O, Lemmel C, Schatz M M, Kloetzel P M, Rammensee H G, Schild H and Holzhütter H G 2005 Cell. Mol. Life Sci. 62 1025
14. Kisselev A F, Akopian T N and Goldberg A L 1998 J. Biol. Chem. 273 1982
15. Mishto M et al 2006 Biol. Chem. 387 417
16. Mishto M, Luciani F, Holzhütter H G, Bellavista E, Santoro A, Textoris-Taube K, Franceschi C, Kloetzel P M and Zaikin A 2008 J. Mol. Biol. 377 1607
17. Kohler A, Cascio P, Leggett D S, Woo K M, Goldberg A L and Finley D 2001 Mol. Cell 7 1143
18. Nussbaum A K, Kuttler C, Hadeler K-P, Rammensee H-G and Schild H 2001 Immunogenetics 53 87
19. Zaikin A, Mitra A K, Goldobin D S and Kurths J 2006 Biophys. Rev. Lett. 1 375
20. Falk K, Rötzschke O, Stevanovic S, Jung G and Rammensee H G 1991 Nature 351 290
21. Madden D R, Gorga J C, Strominger J L and Wiley D C 1991 Nature 353 321