메뉴 건너뛰기




Volumn 16, Issue 2, 2008, Pages 35-41

Isolation of high molecular weight DNA from forest topsoil for metagenomic analysis

Author keywords

High molecular weight (hmw) dna; Metagenomic; Metagenomic library construction

Indexed keywords

FUNGI; POSIBACTERIA;

EID: 65449144767     PISSN: 01287451     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (13)

References (34)
  • 3
    • 0030011823 scopus 로고    scopus 로고
    • Borneman, J., Skroch, P. W., O'Sullivan, K. M., Palus, J. A., Rumjanek, N. G., Jansen, J. L., Nienhuis, J., Triplett, E. W. 1996. Molecular microbial diversity of an agricultural soil in Wisconsin. Applied and Environmental Microbiology 62: 1935'943.
    • Borneman, J., Skroch, P. W., O'Sullivan, K. M., Palus, J. A., Rumjanek, N. G., Jansen, J. L., Nienhuis, J., Triplett, E. W. 1996. Molecular microbial diversity of an agricultural soil in Wisconsin. Applied and Environmental Microbiology 62: 1935'943.
  • 4
    • 0033771173 scopus 로고    scopus 로고
    • PCR primers that amplify fungal rRNA genes from environmental samples
    • Borneman, J., Hartin, R. J. 2000. PCR primers that amplify fungal rRNA genes from environmental samples. Applied and Environmental Microbiology 66: 4356-4360.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 4356-4360
    • Borneman, J.1    Hartin, R.J.2
  • 6
    • 0035206784 scopus 로고    scopus 로고
    • Quantifcation of bacterial subgroups in soil: Comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation
    • Courtois, S., Frostegard, A., Goransson, P., Depret, G., Jeannin, P., Simonet, P. 2001. Quantifcation of bacterial subgroups in soil: comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation. Environmental Microbiology 3: 431-439.
    • (2001) Environmental Microbiology , vol.3 , pp. 431-439
    • Courtois, S.1    Frostegard, A.2    Goransson, P.3    Depret, G.4    Jeannin, P.5    Simonet, P.6
  • 8
    • 33748543962 scopus 로고    scopus 로고
    • Extraction of inhibitor-free metagenomic DNA from polluted sediments, compatible with molecular diversity analysis using adsorption and ion-exchange treatments
    • Desai, C., Madamwar, D. 2007. Extraction of inhibitor-free metagenomic DNA from polluted sediments, compatible with molecular diversity analysis using adsorption and ion-exchange treatments. Bioresource Technology 98: 761-768.
    • (2007) Bioresource Technology , vol.98 , pp. 761-768
    • Desai, C.1    Madamwar, D.2
  • 10
    • 0032192790 scopus 로고    scopus 로고
    • Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products
    • Handelsman, J., Rondon, M. R., Brady, S. F., Clardy, J., Goodman, R. M. 1998. Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chemistry and Biology 5: R245-249.
    • (1998) Chemistry and Biology , vol.5
    • Handelsman, J.1    Rondon, M.R.2    Brady, S.F.3    Clardy, J.4    Goodman, R.M.5
  • 11
    • 0029970177 scopus 로고    scopus 로고
    • Hugenholtz, P., Pace, N. R. 1996. Identifying microbial diversity in the natural environment: a molecular phylogenetic approach. Trends in Biotechnology 14: 190'97.
    • Hugenholtz, P., Pace, N. R. 1996. Identifying microbial diversity in the natural environment: a molecular phylogenetic approach. Trends in Biotechnology 14: 190'97.
  • 13
    • 84902235923 scopus 로고    scopus 로고
    • Lane, D. J. 1991. 16S/23S rRNA sequencing. In: Stackebrandt E, G. M. (Ed.), Nucleic Acid Techniques in Bacterial Systematics, pp. 115-148. New York: John Wiley and Sons.
    • Lane, D. J. 1991. 16S/23S rRNA sequencing. In: Stackebrandt E, G. M. (Ed.), Nucleic Acid Techniques in Bacterial Systematics, pp. 115-148. New York: John Wiley and Sons.
  • 14
    • 33750971458 scopus 로고    scopus 로고
    • Isolation and characterization of a novel lipase from a metagenomic library of tidal fat sediments: Evidence for a new family of bacterial lipases
    • Lee, M. H., Lee, C. H., Oh, T. K., Song, J. K., Yoon, J. H. 2006. Isolation and characterization of a novel lipase from a metagenomic library of tidal fat sediments: evidence for a new family of bacterial lipases. Applied and Environmental Microbiology 72: 7406-7409.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 7406-7409
    • Lee, M.H.1    Lee, C.H.2    Oh, T.K.3    Song, J.K.4    Yoon, J.H.5
  • 16
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesack, W., Stackebrandt, E. 1992. Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. Journal of Bacteriology 174: 5072-5078.
    • (1992) Journal of Bacteriology , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 21
    • 0032703237 scopus 로고    scopus 로고
    • Evaluation and optimization of DNA extraction and purifcation procedures for soil and sediment samples
    • Miller, D. N., Bryant, J. E., Madsen, E. L., Ghiorse, W. C. 1999. Evaluation and optimization of DNA extraction and purifcation procedures for soil and sediment samples. Applied and Environmental Microbiology 65: 4715-4724.
    • (1999) Applied and Environmental Microbiology , vol.65 , pp. 4715-4724
    • Miller, D.N.1    Bryant, J.E.2    Madsen, E.L.3    Ghiorse, W.C.4
  • 22
    • 19944413965 scopus 로고    scopus 로고
    • Nucleic acid isolation from ecological samples-vertebrate gut fora
    • Nordgard, L., Traavik, T., Nielsen, K. M. 2005. Nucleic acid isolation from ecological samples-vertebrate gut fora. Methods in Enzymology 395: 38-48.
    • (2005) Methods in Enzymology , vol.395 , pp. 38-48
    • Nordgard, L.1    Traavik, T.2    Nielsen, K.M.3
  • 23
    • 0033214501 scopus 로고    scopus 로고
    • The Earth's bounty: Assessing and accessing soil microbial diversity
    • Rondon, M. R., Goodman, R. M., Handelsman, J. 1999. The Earth's bounty: assessing and accessing soil microbial diversity. Trends in Biotechnology 17: 403-409.
    • (1999) Trends in Biotechnology , vol.17 , pp. 403-409
    • Rondon, M.R.1    Goodman, R.M.2    Handelsman, J.3
  • 25
    • 0034035471 scopus 로고    scopus 로고
    • Molecular techniques for determining microbial diversity and community structure in natural environments
    • Theron, J., Cloete, T. E. 2000. Molecular techniques for determining microbial diversity and community structure in natural environments. Critical Reviews in Microbiology 26: 37-57.
    • (2000) Critical Reviews in Microbiology , vol.26 , pp. 37-57
    • Theron, J.1    Cloete, T.E.2
  • 27
    • 0036270789 scopus 로고    scopus 로고
    • Microbial diversity and function in soil: From genes to ecosystems
    • Torsvik, V., Ovreas, L. 2002. Microbial diversity and function in soil: from genes to ecosystems. Current Opinion in Microbiology 5: 240-245.
    • (2002) Current Opinion in Microbiology , vol.5 , pp. 240-245
    • Torsvik, V.1    Ovreas, L.2
  • 28
    • 0026597527 scopus 로고
    • Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction
    • Tsai, Y. L., Olson, B. H. 1992. Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction. Applied and Environmental Microbiology 58: 754-757.
    • (1992) Applied and Environmental Microbiology , vol.58 , pp. 754-757
    • Tsai, Y.L.1    Olson, B.H.2
  • 29
    • 0026708461 scopus 로고
    • Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction
    • Tsai, Y. L., Olson, B. H. 1992. Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Applied and Environmental Microbiology 58: 2292-2295.
    • (1992) Applied and Environmental Microbiology , vol.58 , pp. 2292-2295
    • Tsai, Y.L.1    Olson, B.H.2
  • 30
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D. M., Weller, R., Bateson, M. M. 1990. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature. 345: 63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.