-
1
-
-
0027082924
-
Internal water molecules and H-bonding in biological macromolecules: A review of structural features with functional implications
-
Meyer, E. Internal water molecules and H-bonding in biological macromolecules: a review of structural features with functional implications. Prot. Sci., 1992, 1, 1543-1562.
-
(1992)
Prot. Sci
, vol.1
, pp. 1543-1562
-
-
Meyer, E.1
-
2
-
-
1542618345
-
Water in protein structure prediction
-
Papoian, G.A.; Ulander, J.; Eastwood, M.P.; Luthey-Schulten, Z.; Wolynes, P.G. Water in protein structure prediction. Proc. Natl. Acad. Sci., 2004, 101, 3352-3357.
-
(2004)
Proc. Natl. Acad. Sci
, vol.101
, pp. 3352-3357
-
-
Papoian, G.A.1
Ulander, J.2
Eastwood, M.P.3
Luthey-Schulten, Z.4
Wolynes, P.G.5
-
3
-
-
0042868638
-
Role of water mediated interactions in protein-protein recognition landscapes
-
Papoian, G.A.; Ulander, J.; Wolynes, P.G. Role of water mediated interactions in protein-protein recognition landscapes. J. Am. Chem. Soc., 2003, 125, 9170-9178.
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 9170-9178
-
-
Papoian, G.A.1
Ulander, J.2
Wolynes, P.G.3
-
4
-
-
0037058894
-
Molecular recognition-viewed through the eyes of the solvent
-
Ben-Naim, A. Molecular recognition-viewed through the eyes of the solvent. Biophys. Chem., 2002, 101-102, 309-319.
-
(2002)
Biophys. Chem
, vol.101-102
, pp. 309-319
-
-
Ben-Naim, A.1
-
5
-
-
8644234346
-
Water-mediated interaction at a protein-protein interface
-
Ikura, T.; Urakubo, Y.; Nobutoshi, I. Water-mediated interaction at a protein-protein interface. Chem. Phys., 2004, 307, 111-119.
-
(2004)
Chem. Phys
, vol.307
, pp. 111-119
-
-
Ikura, T.1
Urakubo, Y.2
Nobutoshi, I.3
-
6
-
-
0033118334
-
Molecular tinkering of G protein-coupled receptors: An evolutionary success
-
Bockaert, J.; Pin, J.P. Molecular tinkering of G protein-coupled receptors: an evolutionary success. EMBO J., 1999, 18, 1723-1729.
-
(1999)
EMBO J
, vol.18
, pp. 1723-1729
-
-
Bockaert, J.1
Pin, J.P.2
-
7
-
-
0036729484
-
Seven Transmem-brane Spanning Receptors
-
Pierce, K.L.; Premont, R.T.; Lefkowitz, R. J. Seven Transmem-brane Spanning Receptors. Nature Rev. Mol. Cell Biol., 2002, 3, 639-650.
-
(2002)
Nature Rev. Mol. Cell Biol
, vol.3
, pp. 639-650
-
-
Pierce, K.L.1
Premont, R.T.2
Lefkowitz, R.J.3
-
8
-
-
0034464742
-
Uncovering molecular mechanisms involved in activation of G protein-coupled receptors
-
Gether, U. Uncovering molecular mechanisms involved in activation of G protein-coupled receptors. Endocr. Rev., 2000, 21, 90-113.
-
(2000)
Endocr. Rev
, vol.21
, pp. 90-113
-
-
Gether, U.1
-
9
-
-
0038458865
-
Modeling the 3D structure of GPCRs: Advances and application to drug discovery
-
Becker, O.M.; Shacham, S.; Marantz, Y.; Noiman, S. Modeling the 3D structure of GPCRs: advances and application to drug discovery. Curr. Opin. DrugDiscov. Devel., 2003, 6, 353-361.
-
(2003)
Curr. Opin. DrugDiscov. Devel
, vol.6
, pp. 353-361
-
-
Becker, O.M.1
Shacham, S.2
Marantz, Y.3
Noiman, S.4
-
10
-
-
0034801665
-
G protein-coupled receptor drug discovery: Implications from the crystal structure of rhodopsin
-
Ballesteros, J.; Palczewski, K. G protein-coupled receptor drug discovery: implications from the crystal structure of rhodopsin. Curr. Opin. DrugDiscov. Devel., 2001, 4, 561-574.
-
(2001)
Curr. Opin. DrugDiscov. Devel
, vol.4
, pp. 561-574
-
-
Ballesteros, J.1
Palczewski, K.2
-
11
-
-
0031951116
-
Structural bases of vaso-pressin/oxytocin receptor function
-
Barberis, C.; Mouillac, B.; Durroux, T. Structural bases of vaso-pressin/oxytocin receptor function. J. Endocrinol., 1998, 156, 223-229.
-
(1998)
J. Endocrinol
, vol.156
, pp. 223-229
-
-
Barberis, C.1
Mouillac, B.2
Durroux, T.3
-
13
-
-
0032452027
-
Signal transduction pathways of the human V1-vascular, V2-renal, V3-pituitary vasopressin and oxytocin receptors
-
Thibonnier, M.; Berti-Mattera, L.N.; Dulin, N.; Conarty, D.M.; Mattera, R. Signal transduction pathways of the human V1-vascular, V2-renal, V3-pituitary vasopressin and oxytocin receptors. Prog. Brain. Res., 1998, 119, 147-161.
-
(1998)
Prog. Brain. Res
, vol.119
, pp. 147-161
-
-
Thibonnier, M.1
Berti-Mattera, L.N.2
Dulin, N.3
Conarty, D.M.4
Mattera, R.5
-
14
-
-
0034604451
-
Crystal structure of rhodopsin: A G protein-coupled receptor
-
Palczewski, K.; Kumasaka, T.; Hori, T.; Behnke, C.A.; Motoshima, H.; Fox, B.A.; Le Trong, I.; Teller, D.C.; Okada, T.; Stenkamp, R.E.; Yamamoto, M.; Miyano, M. Crystal structure of rhodopsin: A G protein-coupled receptor. Science, 2000, 289, 739-745.
-
(2000)
Science
, vol.289
, pp. 739-745
-
-
Palczewski, K.1
Kumasaka, T.2
Hori, T.3
Behnke, C.A.4
Motoshima, H.5
Fox, B.A.6
Le Trong, I.7
Teller, D.C.8
Okada, T.9
Stenkamp, R.E.10
Yamamoto, M.11
Miyano, M.12
-
15
-
-
0034948696
-
Structural mimicry in G protein-coupled receptors: Implications of the high-resolution structure of rhodopsin for structure-function analysis of rhodopsin-like receptors
-
Ballesteros, J.A.; Shi, L.; Javitch, J.A. Structural mimicry in G protein-coupled receptors: implications of the high-resolution structure of rhodopsin for structure-function analysis of rhodopsin-like receptors. Mol. Pharmacol., 2001, 60, 1-19.
-
(2001)
Mol. Pharmacol
, vol.60
, pp. 1-19
-
-
Ballesteros, J.A.1
Shi, L.2
Javitch, J.A.3
-
16
-
-
0037452868
-
Sequence analyses of G-protein-coupled receptors: Similarities to rhodopsin
-
Mirzadegan, T.; Benko, G.; Filipek, S.; Palczewski, K. Sequence analyses of G-protein-coupled receptors: similarities to rhodopsin. Biochemistry, 42, 2003, 2759-2767.
-
(2003)
Biochemistry
, vol.42
, pp. 2759-2767
-
-
Mirzadegan, T.1
Benko, G.2
Filipek, S.3
Palczewski, K.4
-
17
-
-
0037215651
-
Rhodopsin crystal: New template yielding realistic models of G-protein-coupled receptors?
-
Archer, E.; Maigret, B.; Escrieut, C.; Pradayrol, L.; Fourmy, D. Rhodopsin crystal: new template yielding realistic models of G-protein-coupled receptors? Trends Pharmacol. Sci., 2003, 24, 36-40.
-
(2003)
Trends Pharmacol. Sci
, vol.24
, pp. 36-40
-
-
Archer, E.1
Maigret, B.2
Escrieut, C.3
Pradayrol, L.4
Fourmy, D.5
-
18
-
-
33750836895
-
Crystal structure of a photoactivated deprotonated intermediate of rhodopsin
-
Salom, D.; Lodowski, D.T.; Stenkamp, R.E.; Le Trong, I.; Golczak, M.; Jastrzebska, B.; Harris, T.; Ballesteros, J.A.; Palczewski, K. Crystal structure of a photoactivated deprotonated intermediate of rhodopsin. Proc. Natl. Acad. Sci., 2006, 103, 16123-16128.
-
(2006)
Proc. Natl. Acad. Sci
, vol.103
, pp. 16123-16128
-
-
Salom, D.1
Lodowski, D.T.2
Stenkamp, R.E.3
Le Trong, I.4
Golczak, M.5
Jastrzebska, B.6
Harris, T.7
Ballesteros, J.A.8
Palczewski, K.9
-
19
-
-
0037384043
-
Oxytocin and vasopressin V1a and V2 receptors form constitutive homo-and heterodimers during biosynthesis
-
Terrillon, S.; Durroux, T.; Mouillac, B.; Breit, A.; Ayoub, M.A.; Taulan, M.; Jockers, R.; Barberis, C.; Bouvier, M. Oxytocin and vasopressin V1a and V2 receptors form constitutive homo-and heterodimers during biosynthesis. Mol. Endocrinol., 2003, 17, 677-691.
-
(2003)
Mol. Endocrinol
, vol.17
, pp. 677-691
-
-
Terrillon, S.1
Durroux, T.2
Mouillac, B.3
Breit, A.4
Ayoub, M.A.5
Taulan, M.6
Jockers, R.7
Barberis, C.8
Bouvier, M.9
-
20
-
-
2442438851
-
Homo-and hetero-dimeric complex formations of the human oxytocin receptor
-
Devost, D.; Zingg, H.H. Homo-and hetero-dimeric complex formations of the human oxytocin receptor. J. Neuroendocrinol., 2004, 16 372-377.
-
(2004)
J. Neuroendocrinol
, vol.16
, pp. 372-377
-
-
Devost, D.1
Zingg, H.H.2
-
21
-
-
0029837656
-
Vasopressin and oxytocin receptors in the central nervous system
-
Barberis, C.; Tribollet, E. Vasopressin and oxytocin receptors in the central nervous system. Crit. Rev. Neurobiol., 1996, 10, 119-154.
-
(1996)
Crit. Rev. Neurobiol
, vol.10
, pp. 119-154
-
-
Barberis, C.1
Tribollet, E.2
-
22
-
-
33644764283
-
The effect of tightly-bound water molecules on scaffold diversity in computer-aided de novo ligand design of CDK-2 inhibitors
-
Garcia-Sosa, A.T.; Mancera, R.L. The effect of tightly-bound water molecules on scaffold diversity in computer-aided de novo ligand design of CDK-2 inhibitors. J. Mol. Model., 2006, 12, 422-431.
-
(2006)
J. Mol. Model
, vol.12
, pp. 422-431
-
-
Garcia-Sosa, A.T.1
Mancera, R.L.2
-
23
-
-
33645783040
-
Probing a model of a GPCR/ligand complex in an explicit membrane environment. The human cholecystokinin-1 receptor
-
Hénin, J.; Maigret, B.; Tarek, M.; Escrieut, C.; Fourmy, D.; Chi-pot, C. Probing a model of a GPCR/ligand complex in an explicit membrane environment. The human cholecystokinin-1 receptor. Biophys. J., 2006, 90, 1232-1240.
-
(2006)
Biophys. J
, vol.90
, pp. 1232-1240
-
-
Hénin, J.1
Maigret, B.2
Tarek, M.3
Escrieut, C.4
Fourmy, D.5
Chi-pot, C.6
-
24
-
-
1542316348
-
Novel approaches for modeling of the Al adenosine receptor and its agonist binding site
-
Gutiérrez-de-Teran, H.; Centeno, N.B.; Pastor, M.; Sanz, F. Novel approaches for modeling of the Al adenosine receptor and its agonist binding site. Proteins, 2004, 54, 705-715.
-
(2004)
Proteins
, vol.54
, pp. 705-715
-
-
Gutiérrez-de-Teran, H.1
Centeno, N.B.2
Pastor, M.3
Sanz, F.4
-
25
-
-
29244479584
-
Molecular dynamics simulations of bovine rhodopsin: Influence of protonation states and different membrane-mimicking environments
-
Schlegel, B.; Sippl, W.; Höltje, H-D. Molecular dynamics simulations of bovine rhodopsin: influence of protonation states and different membrane-mimicking environments. J. Mol. Model., 2005, 12, 49-64.
-
(2005)
J. Mol. Model
, vol.12
, pp. 49-64
-
-
Schlegel, B.1
Sippl, W.2
Höltje, H.-D.3
-
26
-
-
0037015153
-
Early steps of the intramolecular signal transduction in rhodopsin explored by molecular dynamics simulations
-
Röhrig, U.F.; Guidoni, L.; Rothlisberger, U. Early steps of the intramolecular signal transduction in rhodopsin explored by molecular dynamics simulations. Biochemistry, 2000, 41, 10799-10809.
-
(2000)
Biochemistry
, vol.41
, pp. 10799-10809
-
-
Röhrig, U.F.1
Guidoni, L.2
Rothlisberger, U.3
-
27
-
-
33644679534
-
Structural changes in the Schiff base region of squid rhodopsin upon photoisomerization studied by low-temperature FTIR spectroscopy
-
Ota, T.; Furutani, Y.; Terakita, A.; Shichida, Y.; Kandori, H. Structural changes in the Schiff base region of squid rhodopsin upon photoisomerization studied by low-temperature FTIR spectroscopy. Biochemistry, 2006, 45, 2845-2851.
-
(2006)
Biochemistry
, vol.45
, pp. 2845-2851
-
-
Ota, T.1
Furutani, Y.2
Terakita, A.3
Shichida, Y.4
Kandori, H.5
-
28
-
-
0037197848
-
Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography
-
Okada, T.; Fujiyoshi, Y.; Silow, M.; Navarro, J.; Landau, E.M.; Shichida, Y. Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography. Proc. Natl. Acad. Sci., 2002, 99, 5982-5987.
-
(2002)
Proc. Natl. Acad. Sci
, vol.99
, pp. 5982-5987
-
-
Okada, T.1
Fujiyoshi, Y.2
Silow, M.3
Navarro, J.4
Landau, E.M.5
Shichida, Y.6
-
29
-
-
33645698998
-
Investigation of mechanism of desmopressin binding in vasopressin V2 receptor versus vasopressin Via and oxytocin receptors-molecular dynamics simulation of the agonist-bound state in the membrane-aqueous system
-
Ślusarz, M.J.; Ślusarz, R.; Ciarkowski, J. Investigation of mechanism of desmopressin binding in vasopressin V2 receptor versus vasopressin Via and oxytocin receptors-molecular dynamics simulation of the agonist-bound state in the membrane-aqueous system. Biopolymers, 2006, 81, 321-338.
-
(2006)
Biopolymers
, vol.81
, pp. 321-338
-
-
Ślusarz, M.J.1
Ślusarz, R.2
Ciarkowski, J.3
-
30
-
-
0038242370
-
Molecular modeling of the neuro-hypophyseal receptor/atosiban complexes
-
Ślusarz, M.J.; Ślusarz, R.; Kaźmierkiewicz, R.; Trojnar, J.; Wisniewski, K.; Ciarkowski, J. Molecular modeling of the neuro-hypophyseal receptor/atosiban complexes. Protein Pept. Lett., 2003, 10, 295-302.
-
(2003)
Protein Pept. Lett
, vol.10
, pp. 295-302
-
-
Ślusarz, M.J.1
Ślusarz, R.2
Kaźmierkiewicz, R.3
Trojnar, J.4
Wisniewski, K.5
Ciarkowski, J.6
-
31
-
-
4744371035
-
Molecular dynamics of complexes of atosiban with neurohypophy-seal receptors in the fully hydrated phospolipid bilayer
-
Ślusarz, M.J.; Ślusarz, R.; Meadows, R.; Trojnar, J.; Ciarkowski, J. Molecular dynamics of complexes of atosiban with neurohypophy-seal receptors in the fully hydrated phospolipid bilayer. QSAR Comb. Sci., 2004, 23, 536-545.
-
(2004)
QSAR Comb. Sci
, vol.23
, pp. 536-545
-
-
Ślusarz, M.J.1
Ślusarz, R.2
Meadows, R.3
Trojnar, J.4
Ciarkowski, J.5
-
32
-
-
23044496352
-
Study of New Oxytocin Antagonist Barusiban Fe200 440, Affinity Toward Human Oxytocin Receptor Versus Vasopressin V1a and V2 Receptors-Molecular Dynamics Simulation in POPC Bilayer
-
Ślusarz, M.J.; Gieldón, A.; Ślusarz, R.; Meadows, R.; Trojnar, J.; Ciarkowski, J. Study of New Oxytocin Antagonist Barusiban Fe200 440, Affinity Toward Human Oxytocin Receptor Versus Vasopressin V1a and V2 Receptors-Molecular Dynamics Simulation in POPC Bilayer. QSAR Comb. Sci., 2005, 24, 603-610.
-
(2005)
QSAR Comb. Sci
, vol.24
, pp. 603-610
-
-
Ślusarz, M.J.1
Gieldón, A.2
Ślusarz, R.3
Meadows, R.4
Trojnar, J.5
Ciarkowski, J.6
-
33
-
-
33644789620
-
Molecular dynamics simulation of human neurohypophyseal hormone receptors complexed with oxytocin-modeling of an activated state
-
Ślusarz, M.J.; Ślusarz, R.; Ciarkowski, J. Molecular dynamics simulation of human neurohypophyseal hormone receptors complexed with oxytocin-modeling of an activated state. J. Pept. Sci., 2006, 12, 171-179.
-
(2006)
J. Pept. Sci
, vol.12
, pp. 171-179
-
-
Ślusarz, M.J.1
Ślusarz, R.2
Ciarkowski, J.3
-
34
-
-
33644790823
-
Analysis of interactions responsible for vasopressin binding to human neurohypophyseal hormone receptors-molecular dynamics study of the activated receptor-vasopressin-Gα systems
-
Ślusarz, M.J.; Gieldoń, A.; Ślusarz, R.; Ciarkowski, J. Analysis of interactions responsible for vasopressin binding to human neurohypophyseal hormone receptors-molecular dynamics study of the activated receptor-vasopressin-Gα systems. J. Pept. Sci., 2006, 12, 180-189.
-
(2006)
J. Pept. Sci
, vol.12
, pp. 180-189
-
-
Ślusarz, M.J.1
Gieldoń, A.2
Ślusarz, R.3
Ciarkowski, J.4
-
35
-
-
33646111925
-
Molecular docking-based study of vasopressin analogues modified at positions 2 and 3 with N-methylphenylalanine: Influence on receptor-bound conformations and interactions with vasopressin and oxytocin receptors
-
Ślusarz, M.J.; Sikorska, E.; Ślusarz, R.; Ciarkowski, J. Molecular docking-based study of vasopressin analogues modified at positions 2 and 3 with N-methylphenylalanine: influence on receptor-bound conformations and interactions with vasopressin and oxytocin receptors. J. Med. Chem., 2006, 49, 2463-2469.
-
(2006)
J. Med. Chem
, vol.49
, pp. 2463-2469
-
-
Ślusarz, M.J.1
Sikorska, E.2
Ślusarz, R.3
Ciarkowski, J.4
-
36
-
-
84986516411
-
Application of the Multimolecule and Multiconformational RESP Methodology to Biopolymers: Charge Derication for DNA, RNA, and Proteins
-
Cieplak, P.; Cornell, W.D.; Bayly, C.; Kollman, P.A. Application of the Multimolecule and Multiconformational RESP Methodology to Biopolymers: Charge Derication for DNA, RNA, and Proteins. J. Comput. Chem. 1995, 16, 1357-1377.
-
(1995)
J. Comput. Chem
, vol.16
, pp. 1357-1377
-
-
Cieplak, P.1
Cornell, W.D.2
Bayly, C.3
Kollman, P.A.4
-
37
-
-
84893169025
-
General Atomic and Molecular Electronic Structure System
-
Schmidt, M.W.; Baldridge, K.K.; Boatz, J.A.; Elbert, S.T.; Gordon, M.S.; Jensen, J.H.; Koseki, S.; Matsunaga, N.; Nguyen, K.A.; Su, S.; Windus, T.L.; Dupuis, M.; Montgomery, J. General Atomic and Molecular Electronic Structure System. J. Comput. Chem., 1993, 14, 1347-1363.
-
(1993)
J. Comput. Chem
, vol.14
, pp. 1347-1363
-
-
Schmidt, M.W.1
Baldridge, K.K.2
Boatz, J.A.3
Elbert, S.T.4
Gordon, M.S.5
Jensen, J.H.6
Koseki, S.7
Matsunaga, N.8
Nguyen, K.A.9
Su, S.10
Windus, T.L.11
Dupuis, M.12
Montgomery, J.13
-
38
-
-
65349095730
-
-
Sybyl 6.8, Tripos Inc. 1699 South Hanley Rd.; St. Louis, MO 63144, U.S.A.
-
Sybyl 6.8, Tripos Inc. 1699 South Hanley Rd.; St. Louis, MO 63144, U.S.A.
-
-
-
-
39
-
-
26444479778
-
Optimization by simulated annealing
-
Kirkpatrick, S.; Gelatt, C. D. Jr.; Vecchi, M. P. Optimization by simulated annealing. Science, 1983, 220, 671-680.
-
(1983)
Science
, vol.220
, pp. 671-680
-
-
Kirkpatrick, S.1
Gelatt Jr., C.D.2
Vecchi, M.P.3
-
40
-
-
65349162957
-
-
Case, D.A.; Pearlman, D.A.; Caldwell, J.W.; Cheatham, T.E.; Wang, J.; Ross, W.S.; Simmerling, C.L.; Darden, T.A.; Merz, K.M.; Stanton, R.V.; Cheng, A.; Vincent, J.J.; Crowley, M.; Tsui, V.; Gohlke, H.; Radmer, R.; Duan, Y.; Pitera, J.; Massova, I.; Seibel, G.L.; Singh, U.C.; Weiner, P.; Kollman, P.A. Amber 7. University of California, San Francisco, 2002.
-
Case, D.A.; Pearlman, D.A.; Caldwell, J.W.; Cheatham, T.E.; Wang, J.; Ross, W.S.; Simmerling, C.L.; Darden, T.A.; Merz, K.M.; Stanton, R.V.; Cheng, A.; Vincent, J.J.; Crowley, M.; Tsui, V.; Gohlke, H.; Radmer, R.; Duan, Y.; Pitera, J.; Massova, I.; Seibel, G.L.; Singh, U.C.; Weiner, P.; Kollman, P.A. Amber 7. University of California, San Francisco, 2002.
-
-
-
-
41
-
-
0022446888
-
Structure of pressinoic acid: The cyclic moiety of vasopressin
-
Langs, D.A.; Smith, G.D.; Stezowski, J.J.; Hughes, R.E. Structure of pressinoic acid: the cyclic moiety of vasopressin. Science, 1986, 232, 1240-1242.
-
(1986)
Science
, vol.232
, pp. 1240-1242
-
-
Langs, D.A.1
Smith, G.D.2
Stezowski, J.J.3
Hughes, R.E.4
-
42
-
-
11644261806
-
Automated docking using a La-marckian genetic algorithm and an empirical binding free energy function
-
Morris, G.M.; Goodsell, D.S.; Halliday, R.S.; Huey, R.; Hart, W.E.; Belew, R.K.; Olson, A.J. Automated docking using a La-marckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem., 1998, 19, 1639-1662.
-
(1998)
J. Comput. Chem
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
43
-
-
0029705324
-
Automated docking of flexible ligands: Applications of AutoDock
-
Goodsell, D.S.; Morris, G.M.; Olson, A.J. Automated docking of flexible ligands: applications of AutoDock. J. Mol. Recognition, 1996, 9, 1-5.
-
(1996)
J. Mol. Recognition
, vol.9
, pp. 1-5
-
-
Goodsell, D.S.1
Morris, G.M.2
Olson, A.J.3
-
44
-
-
0034950798
-
Effects of phospholipid unsaturation on the membrane/water interface: A molecular simulation study
-
Murzyn, K.; Róg, T.; Jezierski, G.; Takaoka, Y.; Pasenkiewicz-Gierula, M. Effects of phospholipid unsaturation on the membrane/water interface: a molecular simulation study. Biophys. J., 2001, 81, 170-183.
-
(2001)
Biophys. J
, vol.81
, pp. 170-183
-
-
Murzyn, K.1
Róg, T.2
Jezierski, G.3
Takaoka, Y.4
Pasenkiewicz-Gierula, M.5
-
45
-
-
0034576964
-
Molecular dynamics simulation studies of lipid bilayer systems
-
Pasenkiewicz-Gierula, M.; Murzyn, K.; Rog, T.; Czaplewski, C. Molecular dynamics simulation studies of lipid bilayer systems. Acta Biochim. Polon., 2000, 47, 601-611.
-
(2000)
Acta Biochim. Polon
, vol.47
, pp. 601-611
-
-
Pasenkiewicz-Gierula, M.1
Murzyn, K.2
Rog, T.3
Czaplewski, C.4
-
46
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann, U.L.; Perera, M.L.; Berkowitz, T.; Darden, T.; Lee, H.; Pedersen, L.G. A smooth particle mesh Ewald method. J. Chem. Phys., 1995, 103, 8577-8593.
-
(1995)
J. Chem. Phys
, vol.103
, pp. 8577-8593
-
-
Essmann, U.L.1
Perera, M.L.2
Berkowitz, T.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
47
-
-
33645941402
-
The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
-
Jorgensen, W.L.; Tirado-Rives, J. The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin. J. Am. Chem. Soc., 1988, 770, 1657-1666.
-
(1988)
J. Am. Chem. Soc
, vol.770
, pp. 1657-1666
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
48
-
-
0001398008
-
How well does a restrained electrostatic potential RESP, model perform in calcluating confor-mational energies of organic and biological molecules?
-
Wang, J.; Cieplak, P.; Kollman, P.A. How well does a restrained electrostatic potential RESP, model perform in calcluating confor-mational energies of organic and biological molecules? J. Comput. Chem., 2000, 21, 1049-1074.
-
(2000)
J. Comput. Chem
, vol.21
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
-
49
-
-
0034284122
-
Recent changes to RasMol, recombining the variants
-
Bernstein, H.J. Recent changes to RasMol, recombining the variants. TIBS 2000, 2000, 25, 453-455.
-
(2000)
TIBS
, vol.2000
, Issue.25
, pp. 453-455
-
-
Bernstein, H.J.1
-
50
-
-
77957055780
-
Integrated Methods for Modeling G-Protein Coupled Receptors
-
Ballesteros, J.A.; Weinstein, H. Integrated Methods for Modeling G-Protein Coupled Receptors. Methods Neurosci., 1995, 25, 366-428.
-
(1995)
Methods Neurosci
, vol.25
, pp. 366-428
-
-
Ballesteros, J.A.1
Weinstein, H.2
-
51
-
-
0037285444
-
Rhodopsin structure, dynamics, and activation: A perspective from crystallography, site-directed spin labeling, sulfhydryl reactivity, and disulfide crosslinking
-
Hubbell, W.L.; Altenbach, C.; Hubbell, C.M.; Khorana, H.G. Rhodopsin structure, dynamics, and activation: a perspective from crystallography, site-directed spin labeling, sulfhydryl reactivity, and disulfide crosslinking. Adv. Protein Chem., 2003, 63, 243-290.
-
(2003)
Adv. Protein Chem
, vol.63
, pp. 243-290
-
-
Hubbell, W.L.1
Altenbach, C.2
Hubbell, C.M.3
Khorana, H.G.4
-
52
-
-
0033033914
-
Activation Mechanism of Human Oxytocin Receptor: A Combined Study of Experimental and Computer-Simulated Mutagenesis
-
Fanelli, F.; Barbier, P.; Zanchetta, D.; De Benedetti, P.G.; Chini, B. Activation Mechanism of Human Oxytocin Receptor: A Combined Study of Experimental and Computer-Simulated Mutagenesis. Mol. Pharmacol., 1999, 56, 214-225.
-
(1999)
Mol. Pharmacol
, vol.56
, pp. 214-225
-
-
Fanelli, F.1
Barbier, P.2
Zanchetta, D.3
De Benedetti, P.G.4
Chini, B.5
-
53
-
-
0031647808
-
Structure/function studies on receptors for vasopressin and oxytocin
-
Wheatley, M.; Hawtin, S.R.; Yarwood, N.J. Structure/function studies on receptors for vasopressin and oxytocin. Adv. Exp. Med. Biol., 1998, 449, 363-365.
-
(1998)
Adv. Exp. Med. Biol
, vol.449
, pp. 363-365
-
-
Wheatley, M.1
Hawtin, S.R.2
Yarwood, N.J.3
-
54
-
-
0028031727
-
A reciprocal mutation supports helix 2 and helix 7 proximity in the gonadotro-pin-releasing hormone receptor
-
Zhou, W.; Flanagan, C.; Ballesteros, J. A.; Konvicka, K.; Davidson, J. S.; Weinstein, H.; Millar, R.P.; Sealfon, S.C. A reciprocal mutation supports helix 2 and helix 7 proximity in the gonadotro-pin-releasing hormone receptor. Mol. Pharmacol., 1994, 45, 165-170.
-
(1994)
Mol. Pharmacol
, vol.45
, pp. 165-170
-
-
Zhou, W.1
Flanagan, C.2
Ballesteros, J.A.3
Konvicka, K.4
Davidson, J.S.5
Weinstein, H.6
Millar, R.P.7
Sealfon, S.C.8
-
55
-
-
0029011757
-
Related contribution of specific helix 2 and 7 residues to conformational activation of the serotonin 5-HT2A receptor
-
Sealfon, S.C; Chi, L.; Ebersole, B.J.; Rodic, V.; Zhang, D.; Ballesteros, J.A.; Weinstein, H. Related contribution of specific helix 2 and 7 residues to conformational activation of the serotonin 5-HT2A receptor. J. Biol. Chem., 1995, 270, 16683-16688.
-
(1995)
J. Biol. Chem
, vol.270
, pp. 16683-16688
-
-
Sealfon, S.C.1
Chi, L.2
Ebersole, B.J.3
Rodic, V.4
Zhang, D.5
Ballesteros, J.A.6
Weinstein, H.7
-
56
-
-
0037329292
-
Structure and activation of muscarinic acetylcholine receptors
-
Hulme, E.C.; Lu, Z.L.; Saldanha, J.W.; Bee, M.S. Structure and activation of muscarinic acetylcholine receptors. Biochem. Soc. Trans., 2001, 31, 29-34.
-
(2001)
Biochem. Soc. Trans
, vol.31
, pp. 29-34
-
-
Hulme, E.C.1
Lu, Z.L.2
Saldanha, J.W.3
Bee, M.S.4
-
57
-
-
0032819441
-
A Mutation in the Second Transmembrane Region of the CB1 Receptor Selectively Disrupts G Protein Signaling and Prevents Receptor Internalization
-
Roche, J.P.; Bounds, S.; Brown, S.; Mackie, K. A Mutation in the Second Transmembrane Region of the CB1 Receptor Selectively Disrupts G Protein Signaling and Prevents Receptor Internalization. Mol. Pharmacol., 1999, 56, 611-618.
-
(1999)
Mol. Pharmacol
, vol.56
, pp. 611-618
-
-
Roche, J.P.1
Bounds, S.2
Brown, S.3
Mackie, K.4
|