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Volumn 26, Issue 5, 2009, Pages 1127-1142

Molecular evolution of the βγ lens crystallin superfamily: Evidence for a retained ancestral function in γn crystallins?

Author keywords

crystallins; N crystallins; Calcium binding; Gene duplication; Novel intron; Protein structure function

Indexed keywords

ALPHA CRYSTALLIN; BETAGAMMA LENS CRYSTALLIN; CRYSTALLIN; GAMMAN CRYSTALLIN; UNCLASSIFIED DRUG; BETA CRYSTALLIN; GAMMA CRYSTALLIN;

EID: 65349153810     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msp028     Document Type: Article
Times cited : (10)

References (108)
  • 3
    • 0037162885 scopus 로고    scopus 로고
    • Aparicio S, Chapman J, Stupka E, et al. (40 co-authors). 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science. 297:1301-1310.
    • Aparicio S, Chapman J, Stupka E, et al. (40 co-authors). 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science. 297:1301-1310.
  • 5
    • 0037449145 scopus 로고    scopus 로고
    • High-resolution X-ray crystal structures of human gammaD crystallin (1.25 A) and the R58H mutant (1.15 A) associated with aculeiform cataract
    • Basak A, Bateman O, Slingsby C, Pande A, Asherie N, Ogun O, Benedek GB, Pande J. 2003. High-resolution X-ray crystal structures of human gammaD crystallin (1.25 A) and the R58H mutant (1.15 A) associated with aculeiform cataract. J Mol Biol. 328:1137-1147.
    • (2003) J Mol Biol , vol.328 , pp. 1137-1147
    • Basak, A.1    Bateman, O.2    Slingsby, C.3    Pande, A.4    Asherie, N.5    Ogun, O.6    Benedek, G.B.7    Pande, J.8
  • 7
    • 36749083463 scopus 로고    scopus 로고
    • Ohno's dilemma: Evolution of new genes under continuous selection
    • Bergthorsson U, Andersson DI, Roth JR. 2007. Ohno's dilemma: evolution of new genes under continuous selection. Proc Natl Acad Sci USA. 104:17004-17009.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 17004-17009
    • Bergthorsson, U.1    Andersson, D.I.2    Roth, J.R.3
  • 8
    • 12144251370 scopus 로고    scopus 로고
    • Transparency and non-refractive functions of crystallins - a proposal
    • Bhat SP. 2004. Transparency and non-refractive functions of crystallins - a proposal. Exp Eye Res. 79:809-816.
    • (2004) Exp Eye Res , vol.79 , pp. 809-816
    • Bhat, S.P.1
  • 12
    • 37249003697 scopus 로고    scopus 로고
    • The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics
    • Brown JM, Lemmon AR. 2007. The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics. Syst Biol. 56:643-655.
    • (2007) Syst Biol , vol.56 , pp. 643-655
    • Brown, J.M.1    Lemmon, A.R.2
  • 13
    • 34347398058 scopus 로고    scopus 로고
    • Evolutionarily conserved genes preferentially accumulate introns
    • Carmel L, Rogozin IB, Wolf YI, Koonin EV. 2007. Evolutionarily conserved genes preferentially accumulate introns. Genome Res. 17:1045-1050.
    • (2007) Genome Res , vol.17 , pp. 1045-1050
    • Carmel, L.1    Rogozin, I.B.2    Wolf, Y.I.3    Koonin, E.V.4
  • 14
    • 0037331904 scopus 로고    scopus 로고
    • Repeatability of clades as a criterion of reliability: A case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa
    • Chen WJ, Bonillo C, Lecointre G. 2003. Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa. Mol Phylogenet Evol. 26:262-288.
    • (2003) Mol Phylogenet Evol , vol.26 , pp. 262-288
    • Chen, W.J.1    Bonillo, C.2    Lecointre, G.3
  • 15
    • 0037396292 scopus 로고    scopus 로고
    • Enzymes with extra talents: Moonlighting functions and catalytic promiscuity
    • Copley SD. 2003. Enzymes with extra talents: moonlighting functions and catalytic promiscuity. Curr Opin Chem Biol. 7:265-272.
    • (2003) Curr Opin Chem Biol , vol.7 , pp. 265-272
    • Copley, S.D.1
  • 16
    • 0037036630 scopus 로고    scopus 로고
    • Going nuclear: Gene family evolution and vertebrate phylogeny reconciled
    • Cotton JA, Page RD. 2002. Going nuclear: gene family evolution and vertebrate phylogeny reconciled. Proc Biol Sci. 269: 1555-1561.
    • (2002) Proc Biol Sci , vol.269 , pp. 1555-1561
    • Cotton, J.A.1    Page, R.D.2
  • 17
    • 0036308563 scopus 로고    scopus 로고
    • The evolution of monomeric and oligomeric betagamma-type crystallins. Facts and hypotheses
    • D'Alessio G. 2002. The evolution of monomeric and oligomeric betagamma-type crystallins. Facts and hypotheses. Eur J Biochem. 269:3122-3130.
    • (2002) Eur J Biochem , vol.269 , pp. 3122-3130
    • D'Alessio, G.1
  • 18
    • 33750041942 scopus 로고    scopus 로고
    • The history of early bee diversification based on five genes plus morphology
    • Danforth BN, Sipes S, Fang J, Brady SG. 2006. The history of early bee diversification based on five genes plus morphology. Proc Natl Acad Sci USA. 103:15118-15123.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 15118-15123
    • Danforth, B.N.1    Sipes, S.2    Fang, J.3    Brady, S.G.4
  • 19
    • 65349128040 scopus 로고    scopus 로고
    • Darwin C. 1859. On the origin of species. Cambridge (MA): Harvard University Press.
    • Darwin C. 1859. On the origin of species. Cambridge (MA): Harvard University Press.
  • 22
    • 0021763606 scopus 로고
    • Primary structures of the alpha-crystallin A chains of twentyeight mammalian species, chicken and frog
    • de Jong WW, Zweers A, Versteeg M, Nuy-Terwindt EC. 1984. Primary structures of the alpha-crystallin A chains of twentyeight mammalian species, chicken and frog. Eur J Biochem. 141:131-140.
    • (1984) Eur J Biochem , vol.141 , pp. 131-140
    • de Jong, W.W.1    Zweers, A.2    Versteeg, M.3    Nuy-Terwindt, E.C.4
  • 23
    • 33750960338 scopus 로고    scopus 로고
    • The transcriptomics of ecological convergence between 2 limnetic coregonine fishes (Salmonidae)
    • Derome N, Bernatchez L. 2006. The transcriptomics of ecological convergence between 2 limnetic coregonine fishes (Salmonidae). Mol Biol Evol. 23:2370-2378.
    • (2006) Mol Biol Evol , vol.23 , pp. 2370-2378
    • Derome, N.1    Bernatchez, L.2
  • 24
    • 49649114289 scopus 로고    scopus 로고
    • Escape from adaptive conflict after duplication in an anthocyanin pathway gene
    • Des Marais DL, Rausher MD. 2008. Escape from adaptive conflict after duplication in an anthocyanin pathway gene. Nature. 454:762-765.
    • (2008) Nature , vol.454 , pp. 762-765
    • Des Marais, D.L.1    Rausher, M.D.2
  • 25
    • 33746748085 scopus 로고    scopus 로고
    • Nonmonophyly of most supraspecific taxa of calcareous sponges (Porifera, Calcarea) revealed by increased taxon sampling and partitioned Bayesian analysis of ribosomal DNA
    • Dohrmann M, Voigt O, Erpenbeck D, Worheide G. 2006. Nonmonophyly of most supraspecific taxa of calcareous sponges (Porifera, Calcarea) revealed by increased taxon sampling and partitioned Bayesian analysis of ribosomal DNA. Mol Phylogenet Evol. 40:830-843.
    • (2006) Mol Phylogenet Evol , vol.40 , pp. 830-843
    • Dohrmann, M.1    Voigt, O.2    Erpenbeck, D.3    Worheide, G.4
  • 26
    • 0019741804 scopus 로고
    • Primary structure of the bovine beta-crystallin Bp chain. Internal duplication and homology with gamma-crystallin
    • Driessen HP, Herbrink P, Bloemendal H, de Jong WW. 1981. Primary structure of the bovine beta-crystallin Bp chain. Internal duplication and homology with gamma-crystallin. Eur J Biochem. 121:83-91.
    • (1981) Eur J Biochem , vol.121 , pp. 83-91
    • Driessen, H.P.1    Herbrink, P.2    Bloemendal, H.3    de Jong, W.W.4
  • 30
    • 33744457709 scopus 로고    scopus 로고
    • A novel method for detecting intramolecular coevolution: Adding a further dimension to selective constraints analyses
    • Fares MA, Travers SA. 2006. A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses. Genetics. 173:9-23.
    • (2006) Genetics , vol.173 , pp. 9-23
    • Fares, M.A.1    Travers, S.A.2
  • 31
    • 0242609180 scopus 로고    scopus 로고
    • Sequence divergence, functional constraint, and selection in protein evolution
    • Fay JC, Wu CI. 2003. Sequence divergence, functional constraint, and selection in protein evolution. Annu Rev Genomics Hum Genet. 4:213-235.
    • (2003) Annu Rev Genomics Hum Genet , vol.4 , pp. 213-235
    • Fay, J.C.1    Wu, C.I.2
  • 32
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol. 17:368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 33
    • 33749318535 scopus 로고    scopus 로고
    • Casting a genetic light on the evolution of eyes
    • Fernald RD. 2006. Casting a genetic light on the evolution of eyes. Science. 313:1914-1918.
    • (2006) Science , vol.313 , pp. 1914-1918
    • Fernald, R.D.1
  • 35
    • 0024212067 scopus 로고
    • Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer
    • Frohman MA, Dush MK, Martin GR. 1988. Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci USA. 85:8998-9002.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 8998-9002
    • Frohman, M.A.1    Dush, M.K.2    Martin, G.R.3
  • 36
    • 0036606898 scopus 로고    scopus 로고
    • Predicting functional divergence in protein evolution by site-specific rate shifts
    • Gaucher EA, Gu X, Miyamoto MM, Benner SA. 2002. Predicting functional divergence in protein evolution by site-specific rate shifts. Trends Biochem Sci. 27:315-321.
    • (2002) Trends Biochem Sci , vol.27 , pp. 315-321
    • Gaucher, E.A.1    Gu, X.2    Miyamoto, M.M.3    Benner, S.A.4
  • 37
    • 0016197604 scopus 로고
    • Amino acid difference formula to help explain protein evolution
    • Grantham R. 1974. Amino acid difference formula to help explain protein evolution. Science. 185:862-864.
    • (1974) Science , vol.185 , pp. 862-864
    • Grantham, R.1
  • 38
    • 0032728408 scopus 로고    scopus 로고
    • Statistical methods for testing functional divergence after gene duplication
    • Gu X. 1999. Statistical methods for testing functional divergence after gene duplication. Mol Biol Evol. 16:1664-1674.
    • (1999) Mol Biol Evol , vol.16 , pp. 1664-1674
    • Gu, X.1
  • 39
    • 0036205440 scopus 로고    scopus 로고
    • DIVERGE: Phylogeny-based analysis for functional-structural divergence of a protein family
    • Gu X, Vander Velden K. 2002. DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family. Bioinformatics. 18:500-501.
    • (2002) Bioinformatics , vol.18 , pp. 500-501
    • Gu, X.1    Vander Velden, K.2
  • 40
    • 47649117544 scopus 로고    scopus 로고
    • How well does the HoT score reflect sequence alignment accuracy?
    • Hall BG. 2008. How well does the HoT score reflect sequence alignment accuracy? Mol Biol Evol. 25:1576-1580.
    • (2008) Mol Biol Evol , vol.25 , pp. 1576-1580
    • Hall, B.G.1
  • 41
    • 0022376704 scopus 로고
    • Dating of the humanape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T. 1985. Dating of the humanape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 22:160-174.
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 43
    • 0037379673 scopus 로고    scopus 로고
    • Phylogeny estimation: Traditional and Bayesian approaches
    • Holder M, Lewis PO. 2003. Phylogeny estimation: traditional and Bayesian approaches. Nat Rev Genet. 4:275-284.
    • (2003) Nat Rev Genet , vol.4 , pp. 275-284
    • Holder, M.1    Lewis, P.O.2
  • 44
    • 0028342845 scopus 로고
    • The evolution of functionally novel proteins after gene duplication
    • Hughes AL. 1994. The evolution of functionally novel proteins after gene duplication. Proc Biol Sci. 256:119-124.
    • (1994) Proc Biol Sci , vol.256 , pp. 119-124
    • Hughes, A.L.1
  • 46
    • 7244259101 scopus 로고    scopus 로고
    • Jaillon O, Aury JM, Brunet F, et al. (60 co-authors). 2004. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature. 431: 946-957.
    • Jaillon O, Aury JM, Brunet F, et al. (60 co-authors). 2004. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature. 431: 946-957.
  • 48
    • 34547729698 scopus 로고    scopus 로고
    • Calcium-binding to lens betaB2-and betaA3-crystallins suggests that all beta-crystallins are calcium-binding proteins
    • Jobby MK, Sharma Y. 2007. Calcium-binding to lens betaB2-and betaA3-crystallins suggests that all beta-crystallins are calcium-binding proteins. FEBS J. 274:4135-4147.
    • (2007) FEBS J , vol.274 , pp. 4135-4147
    • Jobby, M.K.1    Sharma, Y.2
  • 49
    • 33845874632 scopus 로고    scopus 로고
    • Evaluation of whether accelerated protein evolution in chordates has occurred before, after, or simultaneously with gene duplication
    • Johnston CR, O'Dushlaine C, Fitzpatrick DA, Edwards RJ, Shields DC. 2007. Evaluation of whether accelerated protein evolution in chordates has occurred before, after, or simultaneously with gene duplication. Mol Biol Evol. 24: 315-323.
    • (2007) Mol Biol Evol , vol.24 , pp. 315-323
    • Johnston, C.R.1    O'Dushlaine, C.2    Fitzpatrick, D.A.3    Edwards, R.J.4    Shields, D.C.5
  • 50
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones DT, Taylor WR, Thornton JM. 1992. The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci. 8:275-282.
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 52
    • 0017368336 scopus 로고
    • Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution
    • Kimura M. 1977. Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution. Nature. 267:275-276.
    • (1977) Nature , vol.267 , pp. 275-276
    • Kimura, M.1
  • 53
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5:150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 56
    • 34548088457 scopus 로고    scopus 로고
    • Heads or tails: A simple reliability check for multiple sequence alignments
    • Landan G, Graur D. 2007. Heads or tails: a simple reliability check for multiple sequence alignments. Mol Biol Evol. 24:1380-1383.
    • (2007) Mol Biol Evol , vol.24 , pp. 1380-1383
    • Landan, G.1    Graur, D.2
  • 57
    • 0024218965 scopus 로고
    • The evolution of lenticular proteins: The beta- and gamma-crystallin super gene family
    • Lubsen NH, Aarts HJ, Schoenmakers JG. 1988. The evolution of lenticular proteins: the beta- and gamma-crystallin super gene family. Prog Biophys Mol Biol. 51:47-76.
    • (1988) Prog Biophys Mol Biol , vol.51 , pp. 47-76
    • Lubsen, N.H.1    Aarts, H.J.2    Schoenmakers, J.G.3
  • 58
    • 0033972072 scopus 로고    scopus 로고
    • The probability of duplicate gene preservation by subfunctionalization
    • Lynch M, Force A. 2000. The probability of duplicate gene preservation by subfunctionalization. Genetics. 154:459-473.
    • (2000) Genetics , vol.154 , pp. 459-473
    • Lynch, M.1    Force, A.2
  • 59
    • 0034759351 scopus 로고    scopus 로고
    • Evidence for a period of directional selection following gene duplication in a neurally expressed locus of triosephosphate isomerase
    • Merritt TJ, Quattro JM. 2001. Evidence for a period of directional selection following gene duplication in a neurally expressed locus of triosephosphate isomerase. Genetics. 159:689-697.
    • (2001) Genetics , vol.159 , pp. 689-697
    • Merritt, T.J.1    Quattro, J.M.2
  • 60
    • 0037592874 scopus 로고    scopus 로고
    • Faithful expression of a tagged Fugu WT1 protein from a genomic transgene in zebrafish: Efficient splicing of pufferfish genes in zebrafish but not mice
    • Miles CG, Rankin L, Smith SI, Niksic M, Elgar G, Hastie ND. 2003. Faithful expression of a tagged Fugu WT1 protein from a genomic transgene in zebrafish: efficient splicing of pufferfish genes in zebrafish but not mice. Nucleic Acids Res. 31:2795-2802.
    • (2003) Nucleic Acids Res , vol.31 , pp. 2795-2802
    • Miles, C.G.1    Rankin, L.2    Smith, S.I.3    Niksic, M.4    Elgar, G.5    Hastie, N.D.6
  • 62
    • 65349192670 scopus 로고    scopus 로고
    • Nylander JAA. 2004. MrModeltest v2. Evolutionary Biology Centre, Uppsala University.Program distributed by the author
    • Nylander JAA. 2004. MrModeltest v2. Evolutionary Biology Centre, Uppsala University.Program distributed by the author
  • 64
    • 0000198366 scopus 로고    scopus 로고
    • Metamorphic change in EP37 expression: Members of the betagamma-crystallin superfamily in newt
    • Ogawa M, Takabatake T, Takahashi TC, Takeshima K. 1997. Metamorphic change in EP37 expression: members of the betagamma-crystallin superfamily in newt. Dev Genes Evol. 206:417-424.
    • (1997) Dev Genes Evol , vol.206 , pp. 417-424
    • Ogawa, M.1    Takabatake, T.2    Takahashi, T.C.3    Takeshima, K.4
  • 65
    • 0031664880 scopus 로고    scopus 로고
    • Isolation and characterization of a gene expressed mainly in the gastric epithelium, a novel member of the ep37 family that belongs to the betagamma-crystallin superfamily
    • Ogawa M, Takahashi TC, Takabatake T, Takeshima K. 1998. Isolation and characterization of a gene expressed mainly in the gastric epithelium, a novel member of the ep37 family that belongs to the betagamma-crystallin superfamily. Dev Growth Differ. 40:465-473.
    • (1998) Dev Growth Differ , vol.40 , pp. 465-473
    • Ogawa, M.1    Takahashi, T.C.2    Takabatake, T.3    Takeshima, K.4
  • 67
    • 0035527410 scopus 로고    scopus 로고
    • Selecting the best-fit model of nucleotide substitution
    • Posada D, Crandall KA. 2001. Selecting the best-fit model of nucleotide substitution. Syst Biol. 50:580-601.
    • (2001) Syst Biol , vol.50 , pp. 580-601
    • Posada, D.1    Crandall, K.A.2
  • 69
    • 0022137634 scopus 로고
    • Beta s-Crystallin: Structure and evolution of a distinct member of the beta gamma-superfamily
    • Quax-Jeuken Y, Driessen H, Leunissen J, Quax W, de Jong W, Bloemendal H. 1985. Beta s-Crystallin: structure and evolution of a distinct member of the beta gamma-superfamily. Embo J. 4:2597-2602.
    • (1985) Embo J , vol.4 , pp. 2597-2602
    • Quax-Jeuken, Y.1    Driessen, H.2    Leunissen, J.3    Quax, W.4    de Jong, W.5    Bloemendal, H.6
  • 70
    • 0035914434 scopus 로고    scopus 로고
    • Calcium binding properties of gamma-crystallin: Calcium ion binds at the Greek key beta gamma-crystallin fold
    • Rajini B, Shridas P, Sundari CS, Muralidhar D, Chandani S, Thomas F, Sharma Y. 2001. Calcium binding properties of gamma-crystallin: calcium ion binds at the Greek key beta gamma-crystallin fold. J Biol Chem. 276:38464-38471.
    • (2001) J Biol Chem , vol.276 , pp. 38464-38471
    • Rajini, B.1    Shridas, P.2    Sundari, C.S.3    Muralidhar, D.4    Chandani, S.5    Thomas, F.6    Sharma, Y.7
  • 71
    • 0031006549 scopus 로고    scopus 로고
    • AIM1, a novel non-lens member of the betagamma-crystallin superfamily, is associated with the control of tumorigenicity in human malignant melanoma
    • Ray ME, Wistow G, Su YA, Meltzer PS, Trent JM. 1997. AIM1, a novel non-lens member of the betagamma-crystallin superfamily, is associated with the control of tumorigenicity in human malignant melanoma. Proc Natl Acad Sci USA. 94:3229-3234.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 3229-3234
    • Ray, M.E.1    Wistow, G.2    Su, Y.A.3    Meltzer, P.S.4    Trent, J.M.5
  • 72
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 73
    • 34047199274 scopus 로고    scopus 로고
    • The evolution of seminal ribonuclease: Pseudogene reactivation or multiple gene inactivation events?
    • Sassi SO, Braun EL, Benner SA. 2007. The evolution of seminal ribonuclease: pseudogene reactivation or multiple gene inactivation events? Mol Biol Evol. 24:1012-1024.
    • (2007) Mol Biol Evol , vol.24 , pp. 1012-1024
    • Sassi, S.O.1    Braun, E.L.2    Benner, S.A.3
  • 74
    • 14544281087 scopus 로고    scopus 로고
    • Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain
    • Sawyer SL, Wu LI, Emerman M, Malik HS. 2005. Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain. Proc Natl Acad Sci USA. 102:2832-2837.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 2832-2837
    • Sawyer, S.L.1    Wu, L.I.2    Emerman, M.3    Malik, H.S.4
  • 75
    • 0024347551 scopus 로고
    • Calcium ion binding to delta- and to beta-crystallins. The presence of the "EF-hand" motif in delta-crystallin that aids in calcium ion binding
    • Sharma Y, Rao CM, Narasu ML, Rao SC, Somasundaram T, Gopalakrishna A, Balasubramanian D. 1989. Calcium ion binding to delta- and to beta-crystallins. The presence of the "EF-hand" motif in delta-crystallin that aids in calcium ion binding. J Biol Chem. 264:12794-12799.
    • (1989) J Biol Chem , vol.264 , pp. 12794-12799
    • Sharma, Y.1    Rao, C.M.2    Narasu, M.L.3    Rao, S.C.4    Somasundaram, T.5    Gopalakrishna, A.6    Balasubramanian, D.7
  • 77
    • 65349125200 scopus 로고    scopus 로고
    • Smit AFA, Hubley R, Green P. 2004. RepeatMasker Open-3.0. http://www.repeatmasker.org.
    • Smit AFA, Hubley R, Green P. 2004. RepeatMasker Open-3.0. http://www.repeatmasker.org.
  • 79
    • 33646878378 scopus 로고    scopus 로고
    • Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs
    • Steinke D, Salzburger W, Meyer A. 2006. Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs. J Mol Evol. 62:772-784.
    • (2006) J Mol Evol , vol.62 , pp. 772-784
    • Steinke, D.1    Salzburger, W.2    Meyer, A.3
  • 80
    • 0037230001 scopus 로고    scopus 로고
    • Pervasive adaptive evolution in mammalian fertilization proteins
    • Swanson WJ, Nielsen R, Yang Q. 2003. Pervasive adaptive evolution in mammalian fertilization proteins. Mol Biol Evol. 20:18-20.
    • (2003) Mol Biol Evol , vol.20 , pp. 18-20
    • Swanson, W.J.1    Nielsen, R.2    Yang, Q.3
  • 82
    • 0026762950 scopus 로고
    • Cloning of an epidermis-specific Cynops cDNA from Neurula library
    • Takabatake T, Takahashi TC, Takeshima K. 1992. Cloning of an epidermis-specific Cynops cDNA from Neurula library. Dev Growth Differ. 34:277-283.
    • (1992) Dev Growth Differ , vol.34 , pp. 277-283
    • Takabatake, T.1    Takahashi, T.C.2    Takeshima, K.3
  • 83
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems on the analysis of DNA sequences
    • Tavare S. 1986. Some probabilistic and statistical problems on the analysis of DNA sequences. Lect Math Life Sci. 17: 57-86.
    • (1986) Lect Math Life Sci , vol.17 , pp. 57-86
    • Tavare, S.1
  • 84
    • 10944230777 scopus 로고    scopus 로고
    • Duplication and divergence: The evolution of new genes and old ideas
    • Taylor JS, Raes J. 2004. Duplication and divergence: the evolution of new genes and old ideas. Annu Rev Genet. 38:615-643.
    • (2004) Annu Rev Genet , vol.38 , pp. 615-643
    • Taylor, J.S.1    Raes, J.2
  • 85
  • 86
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 87
    • 0026815107 scopus 로고
    • A superfamily in the mammalian eye lens: The beta/gamma-crystallins
    • van Rens GL, de Jong WW, Bloemendal H. 1992. A superfamily in the mammalian eye lens: the beta/gamma-crystallins. Mol Biol Rep. 16:1-10.
    • (1992) Mol Biol Rep , vol.16 , pp. 1-10
    • van Rens, G.L.1    de Jong, W.W.2    Bloemendal, H.3
  • 88
    • 34248182596 scopus 로고    scopus 로고
    • Long-wavelength sensitive visual pigments of the guppy (Poecilia reticulata): Six opsins expressed in a single individual
    • Weadick CJ, Chang BS. 2007. Long-wavelength sensitive visual pigments of the guppy (Poecilia reticulata): six opsins expressed in a single individual. BMC Evol Biol. 7(Suppl. 1): S11.
    • (2007) BMC Evol Biol , vol.7 , Issue.SUPPL. 1
    • Weadick, C.J.1    Chang, B.S.2
  • 89
    • 0027225772 scopus 로고
    • Lens crystallins: Gene recruitment and evolutionary dynamism
    • Wistow G. 1993. Lens crystallins: gene recruitment and evolutionary dynamism. Trends Biochem Sci. 18:301-306.
    • (1993) Trends Biochem Sci , vol.18 , pp. 301-306
    • Wistow, G.1
  • 91
    • 0029400304 scopus 로고
    • A non-lens member of the beta gamma-crystallin superfamily in a vertebrate, the amphibian Cynops
    • Wistow G, Jaworski C, Rao PV. 1995. A non-lens member of the beta gamma-crystallin superfamily in a vertebrate, the amphibian Cynops. Exp Eye Res. 61:637-639.
    • (1995) Exp Eye Res , vol.61 , pp. 637-639
    • Wistow, G.1    Jaworski, C.2    Rao, P.V.3
  • 92
    • 0019786975 scopus 로고
    • Eye-lens proteins: The three-dimensional structure of beta-crystallin predicted from monomeric gamma-crystallin
    • Wistow G, Slingsby C, Blundell T, Driessen H, De Jong W, Bloemendal H. 1981. Eye-lens proteins: the three-dimensional structure of beta-crystallin predicted from monomeric gamma-crystallin. FEBS Lett. 133:9-16.
    • (1981) FEBS Lett , vol.133 , pp. 9-16
    • Wistow, G.1    Slingsby, C.2    Blundell, T.3    Driessen, H.4    De Jong, W.5    Bloemendal, H.6
  • 93
    • 0021881956 scopus 로고
    • Myxococcus xanthus spore coat protein S may have a similar structure to vertebrate lens beta gamma-crystallins
    • Wistow G, Summers L, Blundell T. 1985. Myxococcus xanthus spore coat protein S may have a similar structure to vertebrate lens beta gamma-crystallins. Nature. 315:771-773.
    • (1985) Nature , vol.315 , pp. 771-773
    • Wistow, G.1    Summers, L.2    Blundell, T.3
  • 95
    • 33645772189 scopus 로고    scopus 로고
    • The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes
    • Yamanoue Y, Miya M, Inoue JG, Matsuura K, Nishida M. 2006. The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: tetraodontiformes) and divergence time estimation among model organisms in fishes. Genes Genet Syst. 81:29-39.
    • (2006) Genes Genet Syst , vol.81 , pp. 29-39
    • Yamanoue, Y.1    Miya, M.2    Inoue, J.G.3    Matsuura, K.4    Nishida, M.5
  • 96
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang Z. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol. 15:568-573.
    • (1998) Mol Biol Evol , vol.15 , pp. 568-573
    • Yang, Z.1
  • 97
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • Yang Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol. 39:306-314.
    • (1994) J Mol Evol , vol.39 , pp. 306-314
    • Yang, Z.1
  • 98
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 13:555-556.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 99
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • Yang Z, Bielawski JP. 2000. Statistical methods for detecting molecular adaptation. Trends Ecol Evol. 15:496-503.
    • (2000) Trends Ecol Evol , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, J.P.2
  • 100
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • Yang Z, Nielsen R. 2002. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol Biol Evol. 19:908-917.
    • (2002) Mol Biol Evol , vol.19 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 101
    • 39749161509 scopus 로고    scopus 로고
    • Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage
    • Yang Z, Nielsen R. 2008. Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage. Mol Biol Evol. 25:568-579.
    • (2008) Mol Biol Evol , vol.25 , pp. 568-579
    • Yang, Z.1    Nielsen, R.2
  • 102
    • 0031960185 scopus 로고    scopus 로고
    • Synonymous and nonsynonymous rate variation in nuclear genes of mammals
    • Yang Z, Nielsen R. 1998. Synonymous and nonsynonymous rate variation in nuclear genes of mammals. J Mol Evol. 46: 409-418.
    • (1998) J Mol Evol , vol.46 , pp. 409-418
    • Yang, Z.1    Nielsen, R.2
  • 103
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang Z, Nielsen R, Goldman N, Pedersen AM. 2000. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics. 155:431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.4
  • 104
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WS, Nielsen R. 2005. Bayes empirical bayes inference of amino acid sites under positive selection. Mol Biol Evol. 22:1107-1118.
    • (2005) Mol Biol Evol , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.2    Nielsen, R.3
  • 105
    • 8144225362 scopus 로고    scopus 로고
    • Variation in sequence and organization of splicing regulatory elements in vertebrate genes
    • Yeo G, Hoon S, Venkatesh B, Burge CB. 2004. Variation in sequence and organization of splicing regulatory elements in vertebrate genes. Proc Natl Acad Sci USA. 101:15700-15705.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 15700-15705
    • Yeo, G.1    Hoon, S.2    Venkatesh, B.3    Burge, C.B.4
  • 106
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J, Nielsen R, Yang Z. 2005. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol. 22:2472-2479.
    • (2005) Mol Biol Evol , vol.22 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 107
    • 0032584099 scopus 로고    scopus 로고
    • Positive Darwinian selection after gene duplication in primate ribonuclease genes
    • Zhang J, Rosenberg HF, Nei M. 1998. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc Natl Acad Sci USA. 95:3708-3713.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 3708-3713
    • Zhang, J.1    Rosenberg, H.F.2    Nei, M.3
  • 108
    • 0028108336 scopus 로고
    • Estimation of evolutionary distances between nucleotide sequences
    • Zharkikh A. 1994. Estimation of evolutionary distances between nucleotide sequences. J Mol Evol. 39:315-329.
    • (1994) J Mol Evol , vol.39 , pp. 315-329
    • Zharkikh, A.1


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