Characterization of two cotton cDNAs encoding trans-2-enoyl-CoA reductase reveals a putative novel NADPH-binding motif

Journal of Experimental Botany

Volumn 60, Issue 6, 2009, Pages 1839-1848

  Song, Wen Qiang ^a   Qin, Yong Mei ^a   Saito, Mihoko ^b   Shirai, Tsuyoshi ^b   Pujol, Franois M ^c   Kastaniotis, Alexander J ^c   Hiltunen, J Kalervo ^c   Zhu, Yu Xian ^a  

^a PEKING UNIVERSITY   (China)

^b NAGAHAMA INSTITUTE OF BIO SCIENCE AND TECHNOLOGY   (Japan)

^c UNIVERSITY OF OULU   (Finland)

Author keywords

2 Enoyl CoA reductase; Fatty acid elongation; Gossypium hirsutum; NADPH binding motif; Very long chain fatty acid

Indexed keywords

ACYL COA DEHYDROGENASE (NADP+); ACYL COENZYME A DEHYDROGENASE; ACYL-COA DEHYDROGENASE (NADP+); COMPLEMENTARY DNA; NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; COTTON; ENZYMOLOGY; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; PROTEIN BINDING; PROTEIN MOTIF; SEQUENCE ALIGNMENT;

ACYL-COA DEHYDROGENASES; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; DNA, COMPLEMENTARY; GOSSYPIUM; MOLECULAR SEQUENCE DATA; NADP; PLANT PROTEINS; PROTEIN BINDING; SEQUENCE ALIGNMENT;

GOSSYPIUM HIRSUTUM; SACCHAROMYCES CEREVISIAE;

EID: 65349088559     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erp057     Document Type: Article

References (44)

1. Airenne TT, Torkko JM, Van den plas S, Sormunen RT, Kastaniotis AJ, Wierenga RK, Hiltunen JK. 2003. Structure- function analysis of enoyl thioester reductase involved in mitochondrial maintenance. Journal of Molecular Biology 327, 47-59.
2. Beaudoin F, Gable K, Sayanova O, Dunn T, Napier JA. 2002. A Saccharomyces cerevisiae gene required for heterologous fatty acid elongase activity encodes a microsomal β-keto-reductase. Journal of Biological Chemistry 277, 11481-11488.
3. Bach L, Michaelson LV, Haslam R, et al. 2008. The very-long-chain hydroxy fatty acyl-CoA dehydratase PASTICCINO2 is essential and limiting for plant development. Proceedings of the National Academy of Sciences, USA 105, 14727-14731.
4. 2+-sensitive csg2δ mutant. Journal of Biological Chemistry 273, 30688-30694.
5. Berman HM, Henrick K, Nakamura H. 2003. Announcing the worldwide Protein Data Bank. Nature Structural Biology 10, 980.
6. Bhattacharyya AK, Collins DC. 2001. Site-directed mutagenesis studies of rat steroid 5α-reductase (isozyme-1): mutation of residues in the cofactor binding and C-terminal regions. Journal of Steroid Biochemistry and Molecular Biology 77, 177-182.
7. Cahoon EB, Lynch DV. 1991. Analysis of glucocerebrosides of rye (Secale cereale L. cv Puma) leaf and plasma membrane. Plant Physiology 95, 58-68.
8. Chen M, Han G, Dietrich CR, Dunn TM, Cahoon EB. 2006. The essential nature of sphingolipids in plants as revealed by the functional identification and characterization of the Arabidopsis LCB1 subunit of serine palmitoyltransferase. The Plant Cell 18, 3576-3593.
9. Chen M, Markham JE, Dietrich CR, Jaworski JG, Cahoon EB. 2008. Sphingolipid long-chain base hydroxylation is important for growth and regulation of sphingolipid content and composition in Arabidopsis. The Plant Cell 20, 1862-1878.
10. Cinti DL, Cook L, Nagi MN, Suneja SK. 1992. The fatty acid chain elongation system of mammalian endoplasmic reticulum. Progress in Lipid Research 31, 1-51.
11. Debnam PM, Emes MJ. 1999. Subcellular distribution of enzymes of the oxidative pentose phosphate pathway in root and leaf tissues. Journal of Experimental Botany 50, 1653-1661.
12. Denic V, Weissman JS. 2007. A molecular caliper mechanism for determining very long-chain fatty acid length. Cell 130, 663-677.
13. Gable K, Garton S, Napier JA, Dunn TM. 2004. Functional characterization of the Arabidopsis thaliana orthologue of Tsc13p, the enoyl reductase of the yeast microsomal fatty acid elongating system. Journal of Experimental Botany 55, 543-545.
14. Gloerich J, Ruiter JP, van den Brink DM, Ofman R, Ferdinandusse S, Wanders RJ. 2006. Peroxisomal trans-2-enoyl-CoA reductase is involved in phytol degradation. FEBS Letters 580, 2092-2096.
15. Harlan WR Jr, Wakil SJ. 1963. Synthesis of fatty acids in animal tissues. I. Incorporation of C14-acetyl coenzyme A into a variety of long chain fatty acids by subcellular particles. Journal of Biological Chemistry 238, 3216-3223.
16. Han G, Gable K, Kohlwein SD, Beaudoin F, Napier JA, Dunn TM. 2002. The Saccharomyces cerevisiae YBR159w gene encodes the 3-ketoreductase of the microsomal fatty acid elongase. Journal of Biological Chemistry 277, 35440-35449.
17. Ji SJ, Lu YC, Feng JX, Wei G, Li J, Shi YH, Fu Q, Liu D, Luo JC, Zhu YX. 2003. Isolation and analyses of genes preferentially expressed during early cotton fiber development by substractive PCR and cDNA array. Nucleic Acids Research 31, 2534-2543.
18. Joubès J, Raffaele S, Bourdenx B, Garcia C, Laroche-Traineau J, Moreau P, Domergue F, Lessire R. 2008. The VLCFA elongase gene family in Arabidopsis thaliana: phylogenetic analysis, 3D modelling and expression profiling. Plant Molecular Biology 67, 547-566.
19. Kachroo A, Lapchyk L, Fukushige H, Hildebrand D, Klessig D, Kachroo P. 2003. Plastidial fatty acid signaling modulates salicylic acid- and jasmonic acid-mediated defense pathways in the Arabidopsis ssi2 mutant. The Plant Cell 15, 2952-2965.
20. Kohlwein SD, Eder S, Oh CS, Martin CE, Gable K, Bacikova D, Dunn T. 2001. Tsc13p is required for fatty acid elongation and localizes to a novel structure at the nuclear-vacuolar interface in Saccharomyces cerevisiae. Molecular and Cellular Biology 21, 109-125.
21. Kunst L, Samuels AL. 2003. Biosynthesis and secretion of plant cuticular wax. Progress in Lipid Research 42, 51-80.
22. Kvam E, Gable K, Dunn TM, Goldfarb DS. 2005. Targeting of Tsc13p to nucleus-vacuole junctions: a role for very-long-chain fatty acids in the biogenesis of microautophagic vesicles. Molecular Biology of the Cell 18, 3987-3998.
23. Lassner MW, Lardizabal K, Metz JG. 1996. A jojoba β-ketoacyl-CoA synthase cDNA complements the canola fatty acid elongation mutation in transgenic plants. The Plant Cell 8, 281-292.
24. Marchler-Bauer A, Anderson JB, Derbyshire MK, et al. 2007. CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Research 35, D237-D240.
25. Moon Y-A, Horton JD. 2003. Identification of two mammalian reductases involved in the two-carbon fatty acyl elongation cascade. Journal of Biological Chemistry 278, 7335-7343.
26. Neuhaus HE, Emes MJ. 2000. Nonphotosynthetic metabolism in plastids. Annual Review of Plant Physiology and Plant Molecular Biology 51, 111-140.
27. Ohlrogge J, Browse J. 1995. Lipid biosynthesis. The Plant Cell 7, 957-970.
28. Park JA, Kim TW, Kim SK, Kim WT, Pai HS. 2005. Silencing of NbECR encoding a putative enoyl-CoA reductase results in disorganized membrane structures and epidermal cell ablation in Nicotiana benthamiana. FEBS Letters 579, 4459-4464.
29. Paul S, Gable K, Dunn TM. 2007. A six-membrane-spanning topology for yeast and Arabidopsis Tsc13p, the enoyl reductases of the microsomal fatty acid elongating system. Journal of Biological Chemistry 282, 19237-19246.
30. Poulos A. 1995. Very long chain fatty acids in higher animals. Lipids 30, 1-14.
31. Qin YM, Pujol FMA, Shi YH, Feng JX, Liu YM, Kastaniotis AJ, Hiltunen JK, Zhu YX. 2005. Cloning and functional characterization of two cDNAs encoding NADPH-dependent 3-ketoacyl-CoA reduc-tase from developing cotton fibers. Cell Research 15, 465-473.
32. Qin YM, Hu CY, Pang Y, Kastaniotis AJ, Hiltunen JK, Zhu YX. 2007a. Saturated very-long-chain fatty acids promote cotton fiber and Arabidopsis cell elongation by activating ethylene biosynthesis. The Plant Cell 19, 3692-3704.
33. Qin YM, Pujol FM, Hu CY, Feng JX, Kastaniotis AJ, Hiltunen JK, Zhu YX. 2007b. Genetic and biochemical studies in yeast reveal that the cotton fibre-specific GhCER6 gene functions in fatty acid elongation. Journal of Experimental Botany 58, 473-481.
34. Raffaele S, Vailleau F, Lé ger A, Joubès J, Miersch O, Huard C, Blée E, Mongrand S, Domergue F, Roby D. 2008. A MYB transcription factor regulates very-long-chain fatty acid biosynthesis for activation of the hypersensitive cell death response in Arabidopsis. The Plant Cell 20, 752-767.
35. Rao S, Rossmann M. 1973. Comparison of super-secondary structures in proteins. Journal of Molecular Biology 76, 241-256.
36. Russell DW, Wilson JD. 1994. Steroid 5α-reductase: two genes/two enzymes. Annual Review of Biochemistry 63, 25-61.
37. Saito M, Go M, Shirai T. 2006. An empirical approach for detecting nucleotide-binding sites on proteins. Protein Engineering Design and Selection 19, 67-75.
38. Sherman F, Fink GR, Hicks JB. 1986. Methods in yeast genetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
39. Shi YH, Zhu SW, Mao XZ, Feng JX, Qin YM, Zhang L, Cheng J, Wei LP, Wang ZY, Zhu YX. 2006. Transcriptome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fiber cell elongation. The Plant Cell 18, 651-664.
40. Sigrist CJA, Cerutti L, Hulo N, Gattiker A, Falquet L, Pagni M, Bairoch A, Bucher P. 2002. PROSITE: a documented database using patterns and profiles as motif descriptors. Briefings in Bioinformatics 3, 265-274.
41. Smith S. 1994. The animal fatty acid synthase: one gene, one polypeptide, seven enzymes. FASEB Journal 8, 1248-1259.
42. Todd J, Post-Beittenmiller D, Jaworski JG. 1999. KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. The Plant Journal 17, 119-130.
43. Zhang YM, White SW, Rock CO. 2006. Inhibiting bacterial fatty acid synthesis. Journal of Biological Chemistry 281, 17541-17544.
44. Zheng H, Rowland O, Kunst L. 2005. Disruptions of the Arabidopsis enoyl-CoA reductase gene reveal an essential role for very-long-chain fatty acid synthesis in cell expansion during plant morphogenesis. The Plant Cell 17, 1467-1481.