A general framework for the analysis of phenotypic trajectories in evolutionary studies

Evolution

Volumn 63, Issue 5, 2009, Pages 1143-1154

  Adams, Dean C ^a,b   Collyer, Michael L ^c  

^a IOWA STATE UNIVERSITY   (United States)

^b Department of Statistics Center for Statistics and Applications in Forensic Evidence Iowa State University 2438 Osborn Dr Ames   (United States)

^c STEPHEN F AUSTIN STATE UNIVERSITY   (United States)

Author keywords

Adaptive diversification; Morphological evolution; Ontogeny; Phenotypic change; Phenotypic plasticity; Residual randomization

Indexed keywords

ADAPTATION; EVOLUTION; HYPOTHESIS TESTING; PHENOTYPIC PLASTICITY; SELECTION; STATISTICAL ANALYSIS;

ADAPTATION; ANIMAL; ARTICLE; BIOLOGICAL MODEL; ECOLOGY; EVOLUTION; FOSSIL; GENETIC VARIABILITY; PHENOTYPE; PHYLOGENY; SPECIES DIFFERENTIATION;

ADAPTATION, PHYSIOLOGICAL; ANIMALS; ECOLOGY; EVOLUTION; FOSSILS; GENETIC SPECIATION; GENETIC VARIATION; MODELS, GENETIC; PHENOTYPE; PHYLOGENY;

GLOBOROTALIA;

EID: 64749098726     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2009.00649.x     Document Type: Article

References (57)

1. Adams, D. C. 2004. Character displacement via aggressive interference in Appalachian salamanders. Ecology 85 : 2664 2670.
2. Adams, D. C., and M. M. Cerney. 2007. Quantifying biomechanical motion using Procrustes motion analysis. J. Biomech. 40 : 437 444.
3. Adams, D. C., and M. L. Collyer. 2007. The analysis of character divergence along environmental gradients and other covariates. Evolution 61 : 510 515.
4. Adams, D. C., and F. J. Rohlf. 2000. Ecological character displacement in Plethodon: biomechanical differences found from a geometric morphometric study. Proc. Natl. Acad. Sci. USA 97 : 4106 4111.
5. Adams, D. C., F. J. Rohlf, and D. E. Slice. 2004. Geometric morphometrics: ten years of progress following the 'revolution'. It. J. Zool. 71 : 5 16.
6. Anderson, M. J., and C. J. F. ter Braak. 2003. Permutation tests for multi-factorial analysis of variance. J. Stat. Comput. Simul. 73 : 85 113.
7. Arnold, S. J. 1981. Behavioral variation in natural populations. I. Phenotypic, genetic and environmental correlations between chemoreceptive responses to prey in the garter snake, Thamnophis elegans. Evolution 35 : 489 509.
8. Badyaev, A. V., and T. E. Martin. 2000. Individual variation in growth trajectories: phenotypic and genetic correlations in ontogeny of the house finch (Carpodacus mexicanus). J. Evol. Biol. 13 : 290 301.
9. Baer, C. F., and M. Lynch. 2003. Correlated evolution of life-history with size at maturity in Daphnia pulicaria: patterns within and between populations. Genet. Res. 81 : 123 132.
10. Bégin, M., and D. A. Roff. 2003. The constancy of the G matrix through species divergence and the effects of quantitative genetic constraints on phenotypic evolution: a case study in crickets. Evolution 57 : 1107 1120.
11. Bookstein, F. L. 1987. Random walk and the existence of evolutionary rates. Paleobiology 13 : 446 464.
12. Bookstein, F. L. 1991. Morphometric tools for landmark data: geometry and biology. Cambridge Univ. Press, Cambridge.
13. Chun, Y. J., M. L. Collyer, K. A. Moloney, and J. D. Nason. 2007. Phenotypic plasticity of native vs. invasive purple loosestrife: a two-state multivariate approach. Ecology 88 : 1499 1512.
14. Collyer, M. L., and D. C. Adams. 2007. Analysis of two-state multivariate phenotypic change in ecological studies. Ecology 88 : 683 692.
15. Falconer, D. S. 1960. Introduction to quantitative genetics. Robert MacLehose and Co., Glasgow, UK.
16. Felsenstein, J. 1988. Phylogenies and quantitative characters. Ann. Rev. Ecol. Syst. 19 : 445 471.
17. Freedman, D., and D. Lane. 1983. A nonstochastic interpretation of reported significance levels. J. Bus. Econ. Stat. 1 : 292 298.
18. Gingerich, P. D. 1993. Quantification and comparison of evolutionary rates. Am. J. Sci. 293A : 453 478.
19. Gonzalez, L., and B. F. J. Manly. 1998. Analysis of variance by randomization with small data sets. Environmetrics 9 : 53 65.
20. Gower, J. C., and G. B. Dijksterhuis. 2004. Procrustes problems. Oxford Univ. Press, Oxford.
21. Griswold, C. K., R. Gomulkiewicz, and N. Heckman. 2008. Hypothesis testing in comparative and experimental studies of function-valued traits. Evolution 62 : 1229 1242.
22. Haldane, J. B. S. 1949. Suggestions as to quantitative measurement of rates of evolution. Evolution 3 : 51 56.
23. Hansen, T. F., and D. Houle. 2008. Measuring and comparing evolvability and constraint in multivariate characters. J. Evol. Biol. 21 : 1201 1219.
24. Harmon, L. J., and R. Gibson. 2006. Multivariate phenotypic evolution among island and mainland populations of the ornate day gecko, Phelsuma ornata. Evolution 60 : 2622 2632.
25. Hendry, A. P., and M. T. Kinnison. 1999. The pace of modern life: measuring rates of contemporary microevolution. Evolution 53 : 1637 1653.
26. Hohenlohe, P. A., and S. J. Arnold. 2008. MIPoD: a hypothesis-testing framework for microevolutionary inference from patterns of divergence. Am. Nat. 171 : 366 385.
27. Hollander, J., M. L. Collyer, D. C. Adams, and K. Johannesson. 2006. Phenotypic plasticity in two marine snails: constraints superseding life-history. J. Evol. Biol. 19 : 1861 1872.
28. Hunt, G. 2006. Fitting and comparing models of phyletic evolution: random walks and beyond. Paleobiology 32 : 578 601.
29. Jastrebski, C. J., and B. W. Robinson. 2004. Natural selection and the evolution of replicated trophic polymorphisms in pumpkinseed sunfish (Lepomis gibbosus). Evol. Ecol. Res. 6 : 285 305.
30. Jones, A. G., S. J. Arnold, and R. Burger. 2007. The mutation matrix and the evolution of evolvability. Evolution 61 : 727 745.
31. Klingenberg, C. P., A. V. Badyaev, S. M. Sowry, and N. J. Beckwith. 2001. Inferring developmental modularity from morphological integration: analysis of individual variation and asymmetry in bumblebee wings. Am. Nat. 157 : 11 23.
32. Klingenberg, C. P., L. J. Leamy, and J. M. Cheverud. 2004. Integration and modularity of quantitative trait locus effects on geometric shape in the mouse mandible. Genetics 166 : 1909 1921.
33. Lande, R. 1979. Quantitative genetic analysis of multivariate evolution, applied to brain: body size allometry. Evolution 33 : 402 416.
34. Lande, R., and S. J. Arnold. 1983. The measurement of selection on correlated characters. Evolution 37 : 1210 1226.
35. Langerhans, R. B., and T. J. DeWitt. 2004. Shared and unique features of evolutionary diversification. Am. Nat. 164 : 335 349.
36. Langerhans, R. B., C. A. Layman, A. M. Shokrollahi, and T. J. DeWitt. 2004. Predator-driven phenotypic diversification in Gambusia affinis. Evolution 58 : 2305 2318.
37. Langerhans, R. B., M. E. Gifford, and E. O. Joseph. 2007. Ecological speciation in Gambusia fishes. Evolution 61 : 2056 2074.
38. Lazarus, D., H. Hilbrecht, C. Spencer-Cervato, and H. Thierstein. 1995. Sympatric speciation and phyletic change in Globorotalia truncatulinoides. Paleobiology 21 : 28 51.
39. Losos, J. B. 1992. The evolution of convergent structure in Caribbean Anolis communities. Syst. Biol. 41 : 403 420.
40. Losos, J. B., T. R. Jackman, A. Larson, K. de Queiroz, and L. Rodrigues-Schettino. 1998. Contingency and determinism in replicated adaptive radiations of island lizards. Science 279 : 2115 2118.
41. Marroig, G., and J. M. Cheverud. 2005. Size as a line of least evolutionary resistance: diet and adaptive morphological radiation in new world monkeys. Evolution 59 : 1128 1142.
42. McPeek, M. A., L. Shen, J. Z. Torrey, and H. Farid. 2008. The tempo and mode of three-dimensional morphological evolution in male reproductive structures. Am. Nat. 171 : E158 E178.
43. Mezey, J. G., and D. Houle. 2003. Comparing G matrices: are common principal components informative? Genetics 165 : 411 425.
44. Phillips, P. C., and S. J. Arnold. 1999. Hierarchical comparison of genetic variance-covariance matrices. I. Using the Flury hierarchy. Evolution 53 : 143 151.
45. Polly, P. D. 2004. On the simulation of the evolution of morphological shape: multivariate shape under selection and drift. Palaeontol. Elect. 7.2.7A : 1 28.
46. Polly, P. D. 2008. Developmental dynamics and G-matrices: can morphometric spaces be used to model evolution and development? Evol. Biol. 35 : 83 96.
47. R Core Development Team. 2008. R: a language and environment for statistical computing. Version 2.70. R Foundation for Statistical Computing, Vienna. Available via http://cran.R-project.org.
48. Revell, L. J., M. A. Johnson, J. A. Schulte II., J. J. Kolbe, and J. B. Losos. 2007. A phylogenetic test for adaptive convergence in rock-dwelling lizards. Evolution 61 : 2898 2912.
49. Reznick, D. N., F. H. Rodd, and M. Cardenas. 1996. Life-history evolution in guppies (Poecilia reticulata: Poecilidae). IV. Parallelism in life-history phenotypes. Am. Nat. 147 : 319 338.
50. Robinson, B. W., D. S. Wilson, A. S. Margosian, and P. T. Lotito. 1993. Ecological and morphological differentiation of pumpkinseed sunfish in lakes without bluegill sunfish. Evol. Ecol. 7 : 451 464.
51. Rohlf, F. J., and L. F. Marcus. 1993. A revolution in morphometrics. Trends Ecol. Evol. 8 : 129 132.
52. Rohlf, F. J., and D. E. Slice. 1990. Extensions of the Procrustes method for the optimal superimposition of landmarks. Syst. Zool. 39 : 40 59.
53. Schluter, D. 1996. Adaptive radiation along genetic lines of least resistance. Evolution 50 : 1766 1774.
54. Schluter, D. 2000. The ecology of adaptive radiations. Oxford Univ. Press, Oxford.
55. Schluter, D., and J. D. McPhail. 1992. Ecological character displacement and speciation in sticklebacks. Am. Nat. 140 : 85 108.
56. Spencer-Cervato, C., and H. R. Thierstein. 1997. First appearance of Globorotalia truncatulinoides: cladogenesis and immigration. Mar. Micropaleont. 30 : 267 291.
57. Stayton, C. T. 2006. Testing hypotheses of convergence with multivariate data: morphological and functional convergence among herbivorous lizards. Evolution 60 : 824 841.