On the simulation of the evolution of morphological shape: Multivariate shape under selection and drift

Palaeontologia Electronica

Volumn 7, Issue 2, 2004, Pages

  Polly, P David ^a  

^a QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

Evolutionary rates; Genetic drift; Molar teeth; Morphological evolution; Phenotypic covariances; Selection; Shrew; Sorex (Soricidae, Lipotyphla, Mammalia); Stasis

Indexed keywords

INSECTIVORA; MAMMALIA; SOREX; SORICIDAE;

EID: 27544449951     PISSN: 10948074     EISSN: 10948074     Source Type: Journal    
DOI: None     Document Type: Review

References (123)

1. Adrain, J.M. 2001. Systematic paleontology. Journal of Paleontology, 75:1055-1057.
2. Alroy, J. 2003. Global databases will yield reliable measures of global biodiversity. Paleobiology, 29:26-29.
3. Arnold, S.J. 1992. Constraints in phenotypic evolution. American Naturalist, 140:S85-S107.
4. Arnold, S.J., Pfrender, M.E., and Jones, A.G. 2001. The adaptive landscape as a conceptual bridge between micro- and macroevolution. Genetica, 112-113:9-32.
5. Arnold, S.J., and Phillips, P.C. 1999. Hierarchical comparison of genetic variance-covariance matrices. II. Coastal-inland divergence in the Garter snake Thamnophis elegans. Evolution, 53:1516-1527.
6. Atchley, W.R., and Hall, B.K. 1991. A model for development and evolution of complex morphological structures. Biological Reviews, 66:101-157.
7. Avise, J.C. 1994. Molecular Markers, Natural History, and Evolution. Chapman and Hall, New York.
8. Avise, J.C. 2000. Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, Massachusetts.
9. Avise, J.C., Ball, R.M., and Arnold, J. 1988. Current versus historical population sizes in vertebrate species with high gene flow: a comparison based on mitochondrial DNA lineages and inbreeding theory for neutral mutations. Molecular Biology and Evolution, 5:331-334.
10. Badyaev, A., and Hill, G.E. 2000. The evolution of sexual dimorphism in the house finch. I. Population divergence in morphological covariance structure. Evolution, 54:1784-1794.
11. Berg, H.C. 1993. Random Walks in Biology. Princeton University Press, Princeton.
12. Blackith, R.E., and Reyment, R.A. 1971. Multivariate Morphometrics. Academic Press, London.
13. Bookstein, F.L. 1989. Principal warps: thin-plate splines and the decomposition of deformations. IEEE Transactions on Pattern Analysis and Machine Intelligence, 11:567-585.
14. Brodie, E.D., III. 1993. Homogeneity of the genetic variance-covariance matrix for antipredator traits in two natural populations of the Garter snake, Thamnophis ordinoides. Evolution, 47:844-854.
15. Brown, W.M., George, M. Jr., and Wilson, A.C. 1979. Rapid evolution of animal mitochondrial DNA. Proceedings of the National Academy of Sciences USA, 76:1967-1971.
16. Butler, P.M. 1961. Relationships between upper and lower molar patterns, pp. 117-126. In Vanderbroek, G. (ed.), International Colloquium on the Evolution of Lower and Non-specialized Mammals, Vol. 1. Paleis der Academiën, Brussels.
17. Cheetham, A.H., Jackson, J.B.C., and Hayek, L.C. 1993. Quantitative genetics of bryozoan phenotypic evolution. I. Rate tests for random change versus selection in differentiation of living species. Evolution, 47:1526-1538.
18. Cheetham, A.H., Jackson, J.B.C., and Hayek, L.C. 1994. Quantitative genetics of bryozoan phenotypic evolution. II. Analysis of selection and random change in fossil species using reconstructed genetic parameters. Evolution, 48:360-375.
19. Cheetham, A.H., Jackson, J.B.C., and Hayek, L.C. 1995. Quantitative genetics of bryozoan phenotypic evolution. III. Phenotypic plasticity and the maintenance of genetic variation. Evolution, 49:290-296.
20. Cheverud, J.M. 1995. Morphological integration in the Saddle-back Tamarin (Saguinus fuscicollis) cranium. American Naturalist, 145:63-89.
21. Churchfield, S. 1982. Food availability and diet of the Common shrew, Sorex araneus, in Britain. Journal of Animal Ecology, 51:15-28.
22. Churchfield, S. 1990. The Natural History of Shrews. Christopher Helm, London.
23. Churchfield, S. 2004. Personal communication.
24. Clyde, W.C., and Gingerich, P.D. 1994. Rates of evolution in the dentition of Early Eocene Cantius: comparison of size and shape. Paleobiology, 20:506-522.
25. Crompton, A.W. 1971. The origin of the tribosphenic molar. Zoological Journal of the Linnean Society, 50 (suppl. 1):65-87.
26. Dehm, R. 1962. Altpleistocäne Säuger von Schernfeld bei Eichstätt in Bayem. Mitteilungen der Bayerischen Staatssammlung für Paläontologie und Historishe Geologie, 2:17-61.
27. Dryden, I.L., and Mardia, K.V. 1998. Statistical Shape Analysis. John Wiley and Sons, New York.
28. Evans, A.R., and Sanson, G.D. 2003. The tooth of perfection: functional and spatial constraints on mammalian tooth shape. Biological Journal of the Linnean Society, 78:173-191.
29. Falconer, D.S. and Mackay, T.F.C. 1996. Introduction to Quantitative Genetics, 4th Edition. Longman: Harlow, England.
30. Felsenstein, J. 1973. Maximum likelihood estimation of evolutionary trees from continuous characters. American Journal of Human Genetics, 25:471-492.
31. Felsenstein, J. 1981. Evolutionary trees from gene frequencies and quantitative characters: finding maximum likelihood estimates. Evolution, 35:1229-1242.
32. Felsenstein, J. 1988. Phylogenies and quantitative characters. Annual Review of Ecology and Systematics, 19:445-471.
33. Felsenstein, J. 2002. Quantitative characters, phylogenies, and morphometrics, pp. 27-44. In MacLeod, N., and Forey, P. (eds.), Morphology, Shape, and Phylogenetics. Taylor & Francis, London.
34. Foote, M. 1994. Morphological disparity in Ordivician-Devonian crinoids and the early saturation of morphological space. Paleobiology 20:320-344.
35. Foote, M. 1997. The evolution of morphological diversity. Annual Reviews of Ecology and Systematics, 28:129-152.
36. Foote, M. 1999. Morphological diversity in the evolutionary radiation of Paleozoic and post-Paleozoic crinoids. Paleobiology, 25 (supplement):1-115.
37. Fumagalli, L., Taberlet, P., Stewart, D.T., Gielly, L., Hausser, J., and Vogel, P. 1999. Molecular phylogeny and evolution of Sorex shrews (Soricidae: Insectivora) inferred from mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution, 11:222-235.
38. Gingerich, P.D. 1993. Quantification and comparison of evolutionary rates. American Journal of Science, 293-A:453-478.
39. Gingerich, P.D. 2001. Rates of evolution on the time scale of the evolutionary process. Genetica, 112-113: 127-144.
40. Gingerich, P.D. and Uhen, M.D. 1998. Likelihood estimation of the time of origin of Cetacea and the time of divergence of Cetacea and Artiodactyla. Palaeontologia Electronica, 1(2): 45 pp. [http://palaeo-electronica.org/1998_2/ging_uhen/issue2.htm].
41. Golub, G.H., and Van Loan, C.F. 1983. Matrix Computations. Johns Hopkins University Press, Baltimore.
42. Gower, J.C. 1975. Generalized Procrustes analysis. Psychometrika, 40:33-51.
43. Hansen, T.F.,and Martins, E.P. 1996. Translating between microevolutionary process and macroevolutionary patterns: the correlation structure of interspecific data. Evolution, 50:1404-1417.
44. Harris, A.H. 1998. Fossil history of shrews in North America, pp. 131-156. In Wójcik, J.M., and Wolsan, M. (eds.), Evolution of Shrews, Mammal Research Institute, Polish Academy of Sciences, Bialowieza.
45. Hewitt, G.M. 1999. Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society, 68:87-112.
46. Hewitt, G.M. 2000. The genetic legacy of the Quaternary ice ages. Nature, 405:907-913.
47. Humphries, C.J. 2002. Homology, characters, and continuous variables, pp. 8-26. In MacLeod, N., and Forey, P.L. (eds.), Morphology, Shape, and Phylogeny Taylor & Francis, London.
48. Ibrahim, K.M., Nichols, R.A., and Hewitt, G.M. 1995. Spatial patterns of genetic variation generated by different forms of dispersal during range expansion. Heredity, 77:282-291.
49. Janis, C.M., Damuth, J., and Theodor, J.M. 2004. The species richness of Miocene browsers, and implications for habitat type and primary productivity in the North American grassland biome. Palaeogeography, Palaeoclimatology, and Palaeoecology, 207:371-398.
50. Jernvall, J., Hunter, J.P., and Fortelius, M. 1996. Molar tooth diversity, disparity, and ecology in Cenozoic ungulate radiations. Science, 274:1489-1492.
51. Johnson, N.A., and Porter, A.H. 2001. Towards a new synthesis: population genetics and evolutionary developmental biology Genetica, 112-113:45-58.
52. Jolicoeur, P., and Mosimann, J.E. 1960. Size and shape variation in the Painted Turtle. A principal component analysis. Growth, 24:339-354.
53. Kimura, M. 1983. The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge.
54. Kingsolver, J.G, Hoekstra, H.E., Hoekstra, J.M., Berrigan, D., Vignieri, S.N., Hill, C.E., Hoang, A., Gilbert, P., and Beerli, P. 2001. The strength of phenotypic selection in natural populations. American Naturalist, 157: 245-261.
55. Kinnison, M.T, and Hendry, A.P. 2001. The pace of modern life II: from rates of contemporary microevolution to pattern and process. Genetica, 112-113: 145-164.
56. Klicka, J., and Zink, R.M. 1997. The importance of recent ice ages in speciation: a failed paradigm. Science, 277:1666-1669.
57. Klicka, J., and Zink, R.M. 1998. Pleistocene effects of North American songbird evolution. Proceedings of the Royal Society of London B, 266: 695-700.
58. Klingenberg, C.P., and Leamy, L.J. 2001. Quantitative genetics of geometric shape in the mouse mandible. Evolution, 55:2342-2352.
59. Knowles, L.L. 2004. The burgeoning field of statistical phylogeography. Journal of Evolutionary Biology, 17:1-10.
60. Kohn, L.A.P., and Atchley, W.R. 1988. How similar are genetic correlation structures? Data from rats and mice. Evolution, 42:467-481.
61. Kurtén, B., and Anderson, E. 1980. Pleistocene Mammals of North America. Columbia University Press, New York.
62. Lande, R. 1976. Natural selection and random genetic drift in phenotypic evolution. Evolution, 30:314-334.
63. Lande, R. 1979. Quantitative genetic analysis of multivariate evolution, applied to brain: body size allometry. Evolution, 33:402-416.
64. Lande, R. 1986. The dynamics of peak shifts and the pattern of morphological evolution. Paleobiology, 12:343-354.
65. Lande, R., and Arnold, S.J. 1983. The measurement of selection on correlated characters. Evolution, 37:1210-1226.
66. Lieberman, B.S., Brett, C.E., and Eldredge, N. 1995. A study of stasis and change in two species lineages from the Middle Devonian of New York State. Paleobiology, 21:15-27.
67. Lofsvold, D. 1986. Quantitative genetics of morphological differentiation in Peromyscus. I. Tests of homogeneity of genetic covariance among species and subspecies. Evolution, 40:559-573.
68. Lynch, M. 1990. The rate of morphological evolution in mammals from the standpoint of the neutral expectation. American Naturalist, 136:727-741.
69. Lynch, M., and Walsh, B. 1998. Genetics and Analysis of Quantitative Traits. Sinauer, Sunderland, Massachusetts.
70. MacLeod, N. 2002. Phylogenetic signals in morphometric data, pp. 100-138. In MacLeod, N., and Forey, P.L. (eds.), Morphology, Shape, and Phylogeny. Taylor & Francis, London.
71. MacLeod, N., and Rose, K.D. 1993. Inferring locomotor behavior in Paleogene mammals via eigenshape analysis. American Journal of Science, 293-A:300-355.
72. Marroig, G., and Cheverud, J.M. 2001. A comparison of phenotypic variation and covariation patterns and the role of phylogeny, ecology, and ontogeny during cranial evolution of New World monkeys. Evolution 55:2576-2600.
73. Maynard Smith, J., Burian, R., Kauffman, S., Alberch, P., Campbell, J., Goodwin, B., Lande, R., Raup, D., and Wolpert, L. 1985. Developmental constraints and evolution. Quarterly Review of Biology, 60:265-287.
74. Nei, M. 1987. Molecular Evolutionary Genetics. Columbia University Press, New York.
75. Olson, E.C., and Miller, R.L. 1958. Morphological Integration. University of Chicago Press, Chicago.
76. Padian, K., Lindberg, D., and Polly, P.D. 1994. Cladistics and the fossil record: the uses of history. Annual Review of Earth and Planetary Sciences, 22:63-91.
77. Patton, J.L., and Smith, M.F. 1989. Population structure and the genetic and morphologic divergence among pocket gopher species (genus Thomomys), pp. 284-304. In Otte, D., and Endler, J.A. (eds.), Speciation and Its Consequences. Sinauer, Sunderland, Massachusetts.
78. Polly, P.D. 2001a. On morphological clocks and paleophylogeography: Towards a timescale for Sorex hybrid zones. Genetica, 112-113:339-357.
79. Polly, P.D. 2001b. Paleontology and the comparative method: Ancestral node reconstructions versus observed node values. American Naturalist, 157:596-609.
80. Polly, P.D. 2002. Phylogenetic tests for differences in shape and the importance of divergence times: Eldredge's enigma explored, pp. 220-246. In MacLeod, N., and Forey, P.L. (eds.), Morphology, Shape, and Phylogenetics. Taylor & Francis, London.
81. Polly, P.D. 2003a. Paleophylogeography of Sorex araneus: molar shape as a morphological marker for fossil shrews. Mammalia, 68:233-243.
82. Polly, P.D. 2003b. Paleophylogeography: the tempo of geographic differentiation in marmots (Marmota). Journal of Mammalogy, 84:278-294.
83. Polly, P.D. 2005. Development, geography, and sample size in P matrix evolution: molar-shape change in island populations of Sorex araneus. Evolution and Development, 7:29-41.
84. Polly, P.D., Le Comber, S.C., and Burland, T.M. In press. On the occlusal fit of tribosphenic molars: are we underestimating species diversity in the Mesozoic? Journal of Mammalian Evolution, 12.
85. Ratkiewiezc, M., Fedyk, S., Banaszek, A., Gielly, L., Chêtnicki, W., Jadwiszczak, K., and Taberlet, P. 2002. The evolutionary history of two karyotypic groups of the Common shrew, Sorex araneus, in Poland. Heredity, 88:235-242.
86. Raup, D.M. 1967. Geometric analysis of shell coiling: coiling in ammonoids. Journal of Paleontology, 41:43-65.
87. Raup, D.M. 1976. Species diversity in the Phanerozoic: a tabulation. Paleobiology, 2:279-288.
88. Raup, D.M., and Gould, S.J. 1974. Stochastic simulation and evolution of morphology - towards a nomothetic paleontology. Systematic Zoology, 23:305-322.
89. Raup, D.M., and Marshall, L.G. 1980. Variation between groups in evolutionary rates: a statistical test of significance. Paleobiology, 6:9-23.
90. Repenning, C.A. 1967. Subfamilies and genera of the Soricidae. U.S. Geological Survey Professional Paper, 565:1-74.
91. Rice, S. H. 2002. A general population genetic theory for the evolution of developmental interactions. Proceedings of the National Academy of Sciences, USA, 99:15518-15523.
92. Roff, D.A. 1997. Evolutionary Quantitative Genetics. Chapman & Hall, New York.
93. Roff, D.A., Mosseau, T., Møller, A.P., de Lope, F., and Saino, N. 2004. Geographic variation in the G matrices of wild population of the Barn swallow. Heredity, 93:8-14.
94. Rohlf, F.J. 1999. Shape statistics: Procrustes superimpositions and tangent spaces. Journal of Classification 16:197-223.
95. Rohlf, F.J., and Slice, D. 1990. Extension of the Procrustes method for the optimal superimposition of landmarks. Systematic Zoology, 39:40-59.
96. Roopnarine, P.D. 2001. The description and classification of evolutionary mode: a computational approach. Paleobiology, 27:446-465.
97. Roopnarine, P.D. 2003. Analysis of rates of morphological evolution. Annual Review of Ecology and Evolution, 34:605-632.
98. Rzebik-Kowalska, B. 1998. Fossil history of shrews in Europe, pp. 23-92. In Wójcik, J.M., and Wolsan, M. (eds.), Evolution of Shrews, Mammal Research Institute, Polish Academy of Sciences, Bialowieza.
99. Salzar-Ciudad, I., and Jernvall, J. 2002. A gene network model accounting for development and evolution in mammalian teeth. Proceedings of the National Academy of Sciences, USA, 99:8116-8120.
100. Schmalhausen, I.I. 1949. Factors of Evolution: The Theory of Stabilizing Selection. Translated by T. Dobzhansky. Blakiston, Philadelphia.
101. Semken, H.A., Jr. 1984. Paleoecology of a late Wisconsinan/Holocene micromammal sequence in Peccary Cave, northwestern Arkansas. Carnegie Museum of Natural History Special Publication, 8:405-431.
102. Sepkoski, J.J. 1997. Biodiversity: past, present, and future. Journal of Paleontology, 71:533-539.
103. Sheets, H.D., and Mitchell, C.E. 2001. Uncorrelated change produces the apparent dependency of evolutionary rate on interval. Paleobiology, 27: 429-445.
104. Simpson, G.G. 1944. Tempo and Mode in Evolution. Columbia University Press, New York.
105. Simpson, G.G. 1953. The Major Features of Evolution. Columbia University Press, New York.
106. Slice, D.E., Rohlf, F.J., and Bookstein, F.L. 1996. Glossary, pp. 531-551. In Marcus, L.F., Corti, M., Loy, A., Naylor, G., and Slice, D.E. (eds.), Advances in Morphometrics. Plenum, New York.
107. Smith, L.H. 1998. Species-level phenotypic variation in lower Paleozoic trilobites. Paleobiology, 24:17-36.
108. Smith, L.H., and Lieberman, B.S. 1999. Disparity and constraint in olenellid trilobites and the Cambrian radiation. Paleobiology, 25:459-470.
109. Spicer, G.S. 1993. Morphological evolution of the Drosophila virilis species group as assessed by rate tests for natural selection on quantitative characters. Evolution, 47:1240-1254.
110. Springer, M.S. 1997. Molecular clocks and the timing of placental and marsupial radiations in relation to the Cretaceous-Tertiary boundary. Journal of Mammalian Evolution, 4:285-302.
111. Steppan, S.J. 1997. Phylogenetic analysis of phenotypic covariance structure. I. Contrasting results from matrix correlation and common principal components analyses. Evolution, 51:571-586.
112. Storch, G., Qiu, Z., and Zazhigin, V.S. 1998. Fossil history of shrews in Asia, pp. 91-120. In Wójcik, J.M., and Wolsan, M. (eds.), Evolution of Shrews, Mammal Research Institute, Polish Academy of Sciences, Bialowieza.
113. Tatsuoka, M.M., and Lohnes, P.R. 1988. Multivariate Analysis: Techniques for Educational and Psychological Research. Macmillan, New York.
114. Turelli, M., Gillespie, J. H., and Lande, R. 1988. Rate tests for selection on quantitative characters during macroevolution and microevolution. Evolution, 42:1085-1089.
115. Vrba, E.S., and Eldredge, N. 1984. Individuals, hierarchies, and processes: towards a more complete evolutionary theory. Paleobiology, 10:146-171.
116. Wagner, P.J. 1996. Contrasting the underlying patterns of active trends in morphologic evolution. Evolution, 50:990-1007.
117. Wakeley, J., and Hey, J. 1998. Testing speciation models with DNA sequence data, pp. 157-175. In DeSalle, R., and Schierwater, B. (eds.), Molecular Approaches to Ecology. Birkhäuser Verlag, Basel.
118. 3owie¿a populations of Sorex araneus.
119. Wolf, J.B., Frankino, W.A., Agrawal, A.F., Brodie, E.D. III, and Moore, A.J. 2001. Developmental interactions and the constituents of quantitative variation. Evolution, 55:232-245.
120. Wright, S. 1931. Evolution in Mendelian populations. Genetics, 16:97-159.
121. Wright, S. 1968. Evolution and genetics of populations. Vol. 1. Genetics and Biometric Foundations. University of Chicago Press, (Chicago?.)
122. Zelditch, M.L., Bookstein, F.L., and Lundrigan, B.L. 1992. Ontogeny of integrated skull growth in the Cotton Rat, Sigmodon fulviventer. Evolution, 46:1164-1180.
123. Zima, J., Lukácová, L., and Macholán, M. 1998. Chromosomal evolution in shrews, pp. 173-218. In Wójcik, J.M., and Wolsan, M. (eds.), Evolution of Shrews, Mammal Research Institute, Polish Academy of Sciences, Bialowieza.