-
1
-
-
0035252410
-
Alternative splicing: Increasing diversity in the proteomic world
-
Graveley,B.R. (2001) Alternative splicing: Increasing diversity in the proteomic world. Trends Genet., 17, 100-107.
-
(2001)
Trends Genet
, vol.17
, pp. 100-107
-
-
Graveley, B.R.1
-
2
-
-
0037062982
-
Alternative pre-mRNA splicing and proteome expansion in metazoans
-
Maniatis,T. and Tasic,B. (2002) Alternative pre-mRNA splicing and proteome expansion in metazoans. Nature, 418, 236-243.
-
(2002)
Nature
, vol.418
, pp. 236-243
-
-
Maniatis, T.1
Tasic, B.2
-
3
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black,D.L. (2003) Mechanisms of alternative pre-messenger RNA splicing. Annu. Rev. Biochem., 72, 291-336.
-
(2003)
Annu. Rev. Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
4
-
-
38349132539
-
Genome-wide analysis of alternative pre-mRNA splicing
-
Ben-Dov,C., Hartmann,B., Lundgren,J. and Valcarcel,J. (2008) Genome-wide analysis of alternative pre-mRNA splicing. J. Biol. Chem., 283 1229-1233.
-
(2008)
J. Biol. Chem
, vol.283
, pp. 1229-1233
-
-
Ben-Dov, C.1
Hartmann, B.2
Lundgren, J.3
Valcarcel, J.4
-
5
-
-
0033636518
-
Functional association of U2 snRNP with the ATP-independent spliceosomal complex E
-
Das,R., Zhou,Z. and Reed,R. (2000) Functional association of U2 snRNP with the ATP-independent spliceosomal complex E. Mol. Cell, 5 779-787.
-
(2000)
Mol. Cell
, vol.5
, pp. 779-787
-
-
Das, R.1
Zhou, Z.2
Reed, R.3
-
6
-
-
0033835333
-
Sorting out the complexity of SR protein functions
-
Graveley,B.R. (2000) Sorting out the complexity of SR protein functions. RNA, 6, 1197-1211.
-
(2000)
RNA
, vol.6
, pp. 1197-1211
-
-
Graveley, B.R.1
-
7
-
-
0028061367
-
Function of conserved domains of hnRNP A1 and other hnRNP A/B proteins
-
Mayeda,A., Munroe,S.H., Caceres,J.F. and Krainer,A.R. (1994) Function of conserved domains of hnRNP A1 and other hnRNP A/B proteins. EMBO J. 13, 5483-5495.
-
(1994)
EMBO J
, vol.13
, pp. 5483-5495
-
-
Mayeda, A.1
Munroe, S.H.2
Caceres, J.F.3
Krainer, A.R.4
-
8
-
-
0037121924
-
The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5′ splice sites
-
Forch,P., Puig,O., Martinez,C., Seraphin,B. and Valcarcel,J. (2002) The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5′ splice sites. EMBO J., 21, 6882-6892.
-
(2002)
EMBO J
, vol.21
, pp. 6882-6892
-
-
Forch, P.1
Puig, O.2
Martinez, C.3
Seraphin, B.4
Valcarcel, J.5
-
9
-
-
33749056769
-
An RNA map predicting Nova-dependent splicing regulation
-
Ule,J., Stefani,G., Mele,A., Ruggiu,M., Wang,X., Taneri,B., Gaasterland,T., Blencowe,B.J. and Darnell,R.B. (2006) An RNA map predicting Nova-dependent splicing regulation. Nature, 444, 580-586.
-
(2006)
Nature
, vol.444
, pp. 580-586
-
-
Ule, J.1
Stefani, G.2
Mele, A.3
Ruggiu, M.4
Wang, X.5
Taneri, B.6
Gaasterland, T.7
Blencowe, B.J.8
Darnell, R.B.9
-
10
-
-
0037450704
-
A vertebrate RNA-binding protein Fox-1 regulates tissue-specific splicing via the pentanucleotide GCA UG
-
Jin,Y., Suzuki,H., Maegawa,S., Endo,H., Sugano,S., Hashimoto,K., Yasuda,K. and Inoue,K. (2003) A vertebrate RNA-binding protein Fox-1 regulates tissue-specific splicing via the pentanucleotide GCA UG. EMBO J., 22, 905-912.
-
(2003)
EMBO J
, vol.22
, pp. 905-912
-
-
Jin, Y.1
Suzuki, H.2
Maegawa, S.3
Endo, H.4
Sugano, S.5
Hashimoto, K.6
Yasuda, K.7
Inoue, K.8
-
11
-
-
27644455141
-
Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals
-
Underwood,J.G., Boutz,P.L., Dougherty,J.D., Stoilov,P. and Black,D.L. (2005) Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals. Mol. Cell. Biol., 25 10005-10016.
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 10005-10016
-
-
Underwood, J.G.1
Boutz, P.L.2
Dougherty, J.D.3
Stoilov, P.4
Black, D.L.5
-
12
-
-
17544367787
-
Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities
-
Nakahata,S. and Kawamoto,S. (2005) Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities. Nucleic Acids Res., 33, 2078-2089.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2078-2089
-
-
Nakahata, S.1
Kawamoto, S.2
-
13
-
-
34548764367
-
Tissue-specific splicing regulator Fox-1 induces exon skipping by interfering E complex formation on the downstream intron of human F1gamma gene
-
Fukumura,K., Kato,A., Jin,Y., Ideue,T., Hirose,T., Kataoka,N., Fujiwara,T., Sakamoto,H. and Inoue,K. (2007) Tissue-specific splicing regulator Fox-1 induces exon skipping by interfering E complex formation on the downstream intron of human F1gamma gene. Nucleic Acids Res. 35, 5303-5311.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5303-5311
-
-
Fukumura, K.1
Kato, A.2
Jin, Y.3
Ideue, T.4
Hirose, T.5
Kataoka, N.6
Fujiwara, T.7
Sakamoto, H.8
Inoue, K.9
-
14
-
-
0028034324
-
Complementation by SR proteins of pre-mRNA splicing reactions depleted of U1 snRNP
-
Crispino,J.D., Blencowe,B.J. and Sharp,P.A. (1994) Complementation by SR proteins of pre-mRNA splicing reactions depleted of U1 snRNP. Science 265, 1866-1869.
-
(1994)
Science
, vol.265
, pp. 1866-1869
-
-
Crispino, J.D.1
Blencowe, B.J.2
Sharp, P.A.3
-
15
-
-
0028072388
-
SR proteins can compensate for the loss of U1 snRNP functions in vitro
-
Tarn,W.Y. and Steitz,J.A. (1994) SR proteins can compensate for the loss of U1 snRNP functions in vitro. Genes Dev., 8, 2704-2717.
-
(1994)
Genes Dev
, vol.8
, pp. 2704-2717
-
-
Tarn, W.Y.1
Steitz, J.A.2
-
16
-
-
0029949594
-
Cis-acting elements distinct from the 5′ splice site promote U1-independent pre-mRNA splicing
-
Crispino,J.D., Mermoud,J.E., Lamond,A.I. and Sharp,P.A. (1996) Cis-acting elements distinct from the 5′ splice site promote U1-independent pre-mRNA splicing. RNA, 2, 664-673.
-
(1996)
RNA
, vol.2
, pp. 664-673
-
-
Crispino, J.D.1
Mermoud, J.E.2
Lamond, A.I.3
Sharp, P.A.4
-
17
-
-
0031610367
-
U1 snRNP inhibits pre-mRNA polyadenylation through a direct interaction between U1 70K and poly(A) polymerase
-
Gunderson,S.I., Polycarpou-Schwarz,M. and Mattaj,I.W. (1998) U1 snRNP inhibits pre-mRNA polyadenylation through a direct interaction between U1 70K and poly(A) polymerase. Mol. Cell, 1, 255-264.
-
(1998)
Mol. Cell
, vol.1
, pp. 255-264
-
-
Gunderson, S.I.1
Polycarpou-Schwarz, M.2
Mattaj, I.W.3
-
18
-
-
0036211993
-
Identity elements used in export of mRNAs
-
Ohno,M., Segref,A., Kuersten,S. and Mattaj,I.W. (2002) Identity elements used in export of mRNAs. Mol. Cell, 9, 659-671.
-
(2002)
Mol. Cell
, vol.9
, pp. 659-671
-
-
Ohno, M.1
Segref, A.2
Kuersten, S.3
Mattaj, I.W.4
-
19
-
-
35348897138
-
Role of purine-rich exonic splicing enhancers in nuclear retention of pre-mRNAs
-
Taniguchi,I., Masuyama,K. and Ohno,M. (2007) Role of purine-rich exonic splicing enhancers in nuclear retention of pre-mRNAs. Proc. Natl Acad. Sci. USA, 104, 13684-13689.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 13684-13689
-
-
Taniguchi, I.1
Masuyama, K.2
Ohno, M.3
-
20
-
-
0026524532
-
Association of U6 snRNA with the 5′-splice site region of pre-mRNA in the spliceosome
-
Sawa,H. and Shimura,Y. (1992) Association of U6 snRNA with the 5′-splice site region of pre-mRNA in the spliceosome. Genes Dev. 6, 244-254.
-
(1992)
Genes Dev
, vol.6
, pp. 244-254
-
-
Sawa, H.1
Shimura, Y.2
-
21
-
-
0033634824
-
Pre-mRNA splicing imprints mRNA in the nucleus with a novel RNA-binding protein that persists in the cytoplasm
-
Kataoka,N., Yong,J., Kim,V.N., Velazquez,F., Perkinson,R.A., Wang,F. and Dreyfuss,G. (2000) Pre-mRNA splicing imprints mRNA in the nucleus with a novel RNA-binding protein that persists in the cytoplasm. Mol. Cell 6, 673-682.
-
(2000)
Mol. Cell
, vol.6
, pp. 673-682
-
-
Kataoka, N.1
Yong, J.2
Kim, V.N.3
Velazquez, F.4
Perkinson, R.A.5
Wang, F.6
Dreyfuss, G.7
-
22
-
-
0027207237
-
Uncoupling two functions of the U1 small nuclear ribonucleoprotein particle during in vitro splicing
-
Seiwert,S.D. and Steitz,J.A. (1993) Uncoupling two functions of the U1 small nuclear ribonucleoprotein particle during in vitro splicing. Mol. Cell Biol., 13, 3135-3145.
-
(1993)
Mol. Cell Biol
, vol.13
, pp. 3135-3145
-
-
Seiwert, S.D.1
Steitz, J.A.2
-
23
-
-
0022133074
-
U2 as well as U1 small nuclear ribonucleoproteins are involved in premessenger RNA splicing
-
Black,D.L., Chabot,B. and Steitz,J.A. (1985) U2 as well as U1 small nuclear ribonucleoproteins are involved in premessenger RNA splicing. Cell, 42, 737-750.
-
(1985)
Cell
, vol.42
, pp. 737-750
-
-
Black, D.L.1
Chabot, B.2
Steitz, J.A.3
-
24
-
-
0028941920
-
Modulation of 5′ splice site choice in pre-messenger RNA by two distinct steps
-
Tarn,W.Y. and Steitz,J.A. (1995) Modulation of 5′ splice site choice in pre-messenger RNA by two distinct steps. Proc. Natl Acad. Sci. USA 92, 2504-2508.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 2504-2508
-
-
Tarn, W.Y.1
Steitz, J.A.2
-
25
-
-
0027428777
-
Gene structure of human mitochondrial ATP synthase gamma-subunit. Tissue specificity produced by alternative RNA splicing
-
Matsuda,C., Endo,H., Ohta,S. and Kagawa,Y. (1993) Gene structure of human mitochondrial ATP synthase gamma-subunit. Tissue specificity produced by alternative RNA splicing. J. Biol. Chem., 268, 24950-24958.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 24950-24958
-
-
Matsuda, C.1
Endo, H.2
Ohta, S.3
Kagawa, Y.4
-
26
-
-
0025087346
-
Exon mutations uncouple 5′ splice site selection from U1 snRNA pairing
-
Seraphin,B. and Rosbash,M. (1990) Exon mutations uncouple 5′ splice site selection from U1 snRNA pairing. Cell, 63, 619-629.
-
(1990)
Cell
, vol.63
, pp. 619-629
-
-
Seraphin, B.1
Rosbash, M.2
-
27
-
-
0027923620
-
Involvement of U6 snRNA in 5′ splice site selection
-
Kandels-Lewis,S. and Seraphin,B. (1993) Involvement of U6 snRNA in 5′ splice site selection. Science, 262, 2035-2039.
-
(1993)
Science
, vol.262
, pp. 2035-2039
-
-
Kandels-Lewis, S.1
Seraphin, B.2
-
28
-
-
0027739852
-
Mutations in U6 snRNA that alter splice site specificity: Implications for the active site
-
Lesser,C.F. and Guthrie,C. (1993) Mutations in U6 snRNA that alter splice site specificity: Implications for the active site. Science 262, 1982-1988.
-
(1993)
Science
, vol.262
, pp. 1982-1988
-
-
Lesser, C.F.1
Guthrie, C.2
-
29
-
-
0028917214
-
A novel U2-U6 snRNA structure is necessary for mammalian mRNA splicing
-
Sun,J.S. and Manley,J.L. (1995) A novel U2-U6 snRNA structure is necessary for mammalian mRNA splicing. Genes Dev., 9, 843-854.
-
(1995)
Genes Dev
, vol.9
, pp. 843-854
-
-
Sun, J.S.1
Manley, J.L.2
-
30
-
-
0022550119
-
A compensatory base change in U1 snRNA suppresses a 5′ splice site mutation
-
Zhuang,Y. and Weiner,A.M. (1986) A compensatory base change in U1 snRNA suppresses a 5′ splice site mutation. Cell, 46, 827-835.
-
(1986)
Cell
, vol.46
, pp. 827-835
-
-
Zhuang, Y.1
Weiner, A.M.2
-
31
-
-
0025004279
-
Spliced leader RNA sequences can substitute for the essential 5′ end of U1 RNA during splicing in a mammalian in vitro system
-
Bruzik,J.P. and Steitz,J.A. (1990) Spliced leader RNA sequences can substitute for the essential 5′ end of U1 RNA during splicing in a mammalian in vitro system. Cell, 62, 889-899.
-
(1990)
Cell
, vol.62
, pp. 889-899
-
-
Bruzik, J.P.1
Steitz, J.A.2
-
32
-
-
0029089334
-
A U6 snRNA:pRe-mRNA interaction can be rate-limiting for U1-independent splicing
-
Crispino,J.D. and Sharp,P.A. (1995) A U6 snRNA:pRe-mRNA interaction can be rate-limiting for U1-independent splicing. Genes Dev., 9, 2314-2323.
-
(1995)
Genes Dev
, vol.9
, pp. 2314-2323
-
-
Crispino, J.D.1
Sharp, P.A.2
-
33
-
-
35548952226
-
In vitro and in silico analysis reveals an efficient algorithm to predict the splicing consequences of mutations at the 5′ splice sites
-
Sahashi,K., Masuda,A., Matsuura,T., Shinmi,J., Zhang,Z., Takeshima,Y., Matsuo,M., Sobue,G. and Ohno,K. (2007) In vitro and in silico analysis reveals an efficient algorithm to predict the splicing consequences of mutations at the 5′ splice sites. Nucleic Acids Res., 35, 5995-6003.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5995-6003
-
-
Sahashi, K.1
Masuda, A.2
Matsuura, T.3
Shinmi, J.4
Zhang, Z.5
Takeshima, Y.6
Matsuo, M.7
Sobue, G.8
Ohno, K.9
-
34
-
-
45249109767
-
Can donor splice site recognition occur without the involvement of U1 snRNP?
-
Raponi,M. and Baralle,D. (2008) Can donor splice site recognition occur without the involvement of U1 snRNP? Biochem. Soc. Trans., 36 548-550.
-
(2008)
Biochem. Soc. Trans
, vol.36
, pp. 548-550
-
-
Raponi, M.1
Baralle, D.2
-
35
-
-
0345169036
-
Splicing double: Insights from the second spliceosome
-
Patel,A.A. and Steitz,J.A. (2003) Splicing double: Insights from the second spliceosome. Nat. Rev. Mol. Cell. Biol., 4, 960-970.
-
(2003)
Nat. Rev. Mol. Cell. Biol
, vol.4
, pp. 960-970
-
-
Patel, A.A.1
Steitz, J.A.2
-
36
-
-
50249117753
-
Repression of prespliceosome complex formation at two distinct steps by Fox-1/Fox-2 proteins
-
Zhou,H.L. and Lou,H. (2008) Repression of prespliceosome complex formation at two distinct steps by Fox-1/Fox-2 proteins. Mol. Cell. Biol., 28, 5507-5516.
-
(2008)
Mol. Cell. Biol
, vol.28
, pp. 5507-5516
-
-
Zhou, H.L.1
Lou, H.2
-
37
-
-
34848851109
-
HMGA1a: Sequence-specific RNA-binding factor causing sporadic Alzheimer's disease-linked exon skipping of presenilin-2 pre-mRNA
-
Manabe,T., Ohe,K., Katayama,T., Matsuzaki,S., Yanagita,T., Okuda,H., Bando,Y., Imaizumi,K., Reeves,R., Tohyama,M. et al. (2007) HMGA1a: sequence-specific RNA-binding factor causing sporadic Alzheimer's disease-linked exon skipping of presenilin-2 pre-mRNA. Genes Cells 12, 1179-1191.
-
(2007)
Genes Cells
, vol.12
, pp. 1179-1191
-
-
Manabe, T.1
Ohe, K.2
Katayama, T.3
Matsuzaki, S.4
Yanagita, T.5
Okuda, H.6
Bando, Y.7
Imaizumi, K.8
Reeves, R.9
Tohyama, M.10
-
38
-
-
1142310938
-
Dephosphorylated SRp38 acts as a splicing repressor in response to heat shock
-
Shin,C., Feng,Y. and Manley,J.L. (2004) Dephosphorylated SRp38 acts as a splicing repressor in response to heat shock. Nature, 427, 553-558.
-
(2004)
Nature
, vol.427
, pp. 553-558
-
-
Shin, C.1
Feng, Y.2
Manley, J.L.3
-
39
-
-
0036848091
-
The SR protein SRp38 represses splicing in M phase cells
-
Shin,C. and Manley,J.L. (2002) The SR protein SRp38 represses splicing in M phase cells. Cell, 111, 407-417.
-
(2002)
Cell
, vol.111
, pp. 407-417
-
-
Shin, C.1
Manley, J.L.2
|