Evolution of transcriptional control of the IgH locus: Characterization, expression, and function of TF12/HEB homologs of the catfish

Journal of Immunology

Volumn 173, Issue 9, 2004, Pages 5476-5484

  Hikima, Jun Ichi ^a   Cioffi, Christopher C ^a,c   Middleton, Darlene L ^a   Wilson, Melanie R ^b   Miller, Norman W ^b   Clem, L William ^b   Warr, Gregory W ^a,d  

^a MEDICAL UNIVERSITY OF SOUTH CAROLINA   (United States)

^b UNIVERSITY OF MISSISSIPPI SCHOOL OF MEDICINE   (United States)

^c JOHNSON AND JOHNSON PHARMACEUTICAL RESEARCH AND DEVELOPMENT   (United States)

^d Hollings Marine Laboratory   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; E PROTEIN; HELIX LOOP HELIX PROTEIN; IMMUNOGLOBULIN HEAVY CHAIN; PROTEIN CFEB1; PROTEIN CFEB2; PROTEIN TF12 HEB; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ALTERNATIVE RNA SPLICING; ARTICLE; B LYMPHOCYTE; CHANNEL CATFISH; CONSENSUS SEQUENCE; DNA LIBRARY; E BOX ELEMENT; ENHANCER REGION; EVOLUTION; GENE LOCUS; GENETIC CONSERVATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; RNA PROCESSING; STRUCTURE ACTIVITY RELATION; TELEOST; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION; VERTEBRATE;

EID: 6344275305     PISSN: 00221767     EISSN: None     Source Type: Journal    
DOI: 10.4049/jimmunol.173.9.5476     Document Type: Article

References (47)

1. Coppe, J.-P., A. P. Smith, and P.-Y. Desprez. 2003. Id proteins in epithelial cells. Exp. Cell Res. 285:131.
2. Massari, M. E., and C. Murre. 2000. Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms. Mol. Cell. Biol. 20:426.
3. Engel, I., and C. Murre. 2001. The function of E- and Id proteins in lymphocyte development. Nat. Rev. Immunol. 1:193.
4. Quong, M. W., W. J. Romanow, and C. Murre. 2002. E protein function in lymphocyte development. Annu. Rev. Immunol. 20:301.
5. Sayegh, C. E., M. W. Quong, Y. Agata, and C. Murre. 2003. E-proteins directly regulate expression of activation-induced deaminase in mature B cells. Nat. Immunol. 4:586.
6. Murre, C., P. S. McCaw, H. Vaessin, M. Caudy, L. Y. Jan, Y. N. Jan, C. V. Cabrera, J. N. Buskin, S. D. Hauschka, A. B. Lassar, et al. 1989. Interactions between heterologous helix-loop-helix proteins generate complexes that bind specifically to a common DNA sequence. Cell 58:537.
7. Hu, J.-S., E. N. Olson, and R. E. Kingston. 1992. HEB, a helix-loop-helix protein related to E2A and ITF2 that can modulate the DNA-binding ability of myogenic regulatory factors. Mol. Cell. Biol. 12:1031.
8. Henthorm, P., R. McCarrick-Walmslley, and T. Kadesch. 1990. Sequence of the cDNA encoding ITF-1, a positive-acting transcription factor. Nucleic Acids Res. 18:677.
9. Comeliussen, B., A. Thomell, B. Hallberg, and T. Grundström. 1991. Helix-loop-helix transcriptional activators bind to a sequence in glucocorticoid response elements of retrovirus enhancers. J. Virol. 65:6084.
10. Murre, C., and D. Baltimore. 1993. The helix-loop-helix motif: structure and function. In Transcriptional Regulation. S. L. McKnight and R. K. Yamamoto, eds. Cold Spring Harbor Lab. Press, Plainview, NY, p. 861.
11. Markus, M., and R. Benezra. 1999. Two isoforms of protein disulfide isomerase alter the dimerization status of E2A proteins by a redox mechanism. J. Biol. Chem. 274:1040.
12. Shen, C.-P., and T. Kadesch. 1995. B-cell-specific DNA binding by an E47 homodimer. Mol. Cell. Biol. 15:4518.
13. Sloan, S. R., C.-P. Shen, R. McCarrick-Walmsley, and T. Kadesch. 1996. Phosphorylation of E47 as a potential determinant of B-cell-specific activity. Mol. Cell. Biol. 16:6900.
14. Benezra, R., R. Davis, D. Lockshon, D. Turner, and H. Weintraub. 1990. The protein Id: a negative regulator of helix-loop-helix DNA binding proteins. Cell 61:49.
15. Yokota, Y. 2001. Id and development. Oncogene 20:8290.
16. Rivera, R., and C. Murre. 2001. The regulation and function of the Id proteins in lymphocyte development. Oncogene 20:8308.
17. Ephrussi, A., G. M. Church, S. Tonegawa, and W. Gilbert. 1985. B lineage-specific interactions of an immunoglobulin enhancer with cellular factors in vivo. Science 227:134.
18. Calame, K., and S. Ghosh. 1995. Regulation of immunoglobulin gene transcription. In Immunoglobulin Genes. T. Honjo and F. W. Alt, eds. Academic, San Diego, p. 397.
19. Perez-Mutul, J., M. Macchi, and B. Wasylyk. 1988. Mutational analysis of the contribution of sequence motifs within the IgH enhancer to tissue specific transcriptional activation. Nucleic Acids Res. 16:6081.
20. Nelson, B., T. Kadesch, and R. Sen. 1990. Complex regulation of the immunoglobulin μ heavy-chain gene enhancer: μB, a new determinant of enhancer function. Mol. Cell. Biol. 10:3145.
21. Bain, G., and C. Murre. 1998. The role of E-proteins in B- and T-lymphocyte development. Semin. Immunol. 10:143.
22. Takeda, J., A. Cheng, F. Mauxion, C. A. Nelson, R. D. Newberry, W. C. Sha, R. Sen, and D. Y. Loh. 1990. Functional analysis of the murine T-cell receptor β enhancer and characteristics of its DNA-binding proteins. Mol. Cell. Biol. 10:5027.
23. Ho, I. C., L. H. Yang, G. Morle, and J. M. Leiden. 1989. A T-cell-specific transcriptional enhancer element 3′ of Cα in the human T-cell receptor α locus. Proc. Natl. Acad. Sci. USA 86:6714.
24. Cioffi, C. C., D. L. Middleton, M. R. Wilson, N. W. Miller, L. W. Clem, and G. W. Warr. 2001. An IgH enhancer that drives transcription through basic helix-loop-helix and Oct transcription factor binding motifs: functional analysis of the Eμ3′ enhancer of the catfish. J. Biol. Chem. 276:27825.
25. Erman, B., M. Cortes, B. S. Nikolajczyk, N. A. Speck, and R. Sen. 1998. ETS-core binding factor: a common composite motif in antigen receptor gene enhancers. Mol. Cell. Biol. 18:1322.
26. Nikolajczyk, B. S., B. Nelsen, and R. Sen. 1996. Precise alignment of sites required for μenhancer activation in B cells. Mol. Cell. Biol. 16:4544.
27. Nikolajczyk, B. S., M. Cortes, R. Feinman, and R. Sen. 1997. Combinatorial determinants of tissue-specific transcription in B cells and macrophages. Mol. Cell. Biol. 17:3527.
28. Rao, E., W. Dang, G. Tian, and R. Sen. 1997. A three-protein-DNA complex on a B cell-specific domain of the immunoglobulin μ heavy chain gene enhancer. J. Biol. Chem. 272:6722.
29. Magor, B. G., D. A. Ross, D. L. Middleton, and G. W. Warr. 1997. Functional motifs in the IgH enhancer of the channel catfish. Immunogenetics 46:192.
30. Ross, D. A., B. G. Magor, D. L. Middleton, M. R. Wilson, W. M. Norman, L. W. Clem, and G. W. Warr. 1998. Characterization of Oct2 from the channel catfish: functional preference for a variant octamer motif. J. Immunol. 160:3874.
31. Ross, D. A., M. Lyles, B. E. Ledford, B. G. Magor, M. R. Wilson, W. M. Norman, L. W. Clem, D. L. Middleton, and G. W. Warr. 1999. Catfish Oct2 binding affinity and functional preference for octamer motifs, and interaction with OBF-1. Dev. Comp. Immunol. 23:199.
32. Cioffi, C. C., R. S. Pollenz, D. L. Middleton, M. R. Wilson, N. W. Miller, L. W. Clem, G. W. Warr, and D. A. Ross. 2002. Oct2 transcription factor of a teleost fish: activation domains and function from an enhancer. Arch. Biochem. Biophys. 404:55.
33. Wulbeck, C., C. Fromental-Ramain, and J. A. Campos-Ortega. 1994. The HLH domain of a zebrafish HE12 homologue can partially substitute for functions of the HLH domain of Drosophila DAUGHTERLESS. Mech. Dev. 46:73.
34. Nihei, Y., A. Kobiyama, Y. Hirayama, K. Kikuchi, and S. Watabe. 1999. The mRNA expression patterns of E12 transcription factor in various developmental stages and adult tissues of carp. Fish. Sci. 65:600.
35. Miller, N. W., M. A. Rycyzyn, M. R. Wilson, G. W. Warr, J. P. Naftel, and L. W. Clem. 1994. Development and characterization of channel catfish long term B cell lines. J. Immunol. 152:2180.
36. Swofford, D. L. 2002. PAUP*: Pylogenetic Analysis Using Parsimony (* and Other Methods), Version 4. Sinauer Associates, Sunderland, MA.
37. Magor, B. G., D. A. Ross, L. Pilström, and G. W. Warr. 1999. Transcriptional enhancers and the evolution of the IgH locus, Immunol. Today 20:13.
38. Atchley, W. R., and W. M. Fitch. 1997. A natural classification of the basic helix-loop-helix class of transcription factors. Proc. Natl. Acad. Sci. USA 94:5172.
39. Zhuang, Y., R. J. Barndt, L. Pan, R. Kelley, and M. Dai. 1998. Functional replacement of the mouse E2A gene with a human HEB cDNA. Mol. Cell. Biol. 18:3340.
40. Sawada, S., and D. R. Littman. 1993. A heterodimer of HEB and an E12-related protein interacts with the CD4 enhancer and regulates its activity in T-cell lines. Mol. Cell. Biol. 13:5620.
41. Watada, H., Y. Kajimoto, Y. Umayahara, T. Matsuoka, T. Morishima, Y. Yamasaki, R. Kawamori, and T. Kamada. 1995. Ubiquitous, but variable, expression of two alternatively spliced mRNAs encoding mouse homologues of transcription factors E47 and E12. Gene 153:255.
42. Skerjanc, I. S., J. Truong, P. Filion, and M. W. McBurney. 1996. A splice variant of the ITF-2 transcript encodes a transcription factor that inhibits MyoD activity. J. Biol. Chem. 271:3555.
43. Liu, Y., S. K. Ray, X.-Q. Yang, V. Luntz-Leybman, and I.-M. Chiu. 1998. A splice variant of E2-2 basic helix-loop-helix protein represses the brain-specific fibroblast growth factor 1 promoter through the binding to an imperfect E-box. J. Biol. Chem. 273:19269.
44. Murkus, M., Z. Du, and R. Benezra. 2002. Enhancer-specific modulation of E protein activity. J. Biol. Chem. 277:6469.
45. Sun, X. H., and D. Baltimore. 1991. An inhibitory domain of E12 transcription factor prevents DNA binding in E12 homodimers but not in E12 heterodimers. Cell 64:459.
46. Bain, G., S. Gruenwald, and C. Murre. 1993. E2A and E2-2 are subunits of B-cell-specific E2-box DNA-binding proteins. Mol. Cell. Biol. 13:3522.
47. Bain, G., E. C. Robanus Maandag, H. P. te Riele, A. J. Feeney, A. Sheehy, M. Schlissel, S. A. Shinton, R. R. Hardy, and C. Murre. 1997. Both E12 and E47 allow commitment to the B cell lineage. Immunity 6:145.