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Volumn 4, Issue 3, 2009, Pages

Comparison of gene expression profile in embryonic mesencephalon and neuronal primary cultures

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BIOINFORMATICS; BRAIN DEVELOPMENT; CONTROLLED STUDY; EMBRYO; EMBRYO DEVELOPMENT; FEMALE; FUNCTIONAL GENOMICS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE SEQUENCE; MESENCEPHALON; NERVE CELL CULTURE; NERVE CELL DIFFERENTIATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PROMOTER REGION; RAT; UNINDEXED SEQUENCE; ANIMAL; BIOLOGY; CELL CULTURE; CYTOLOGY; GENE REGULATORY NETWORK; METABOLISM; METHODOLOGY; MICROARRAY ANALYSIS; MOLECULAR GENETICS; NERVE CELL; PHYSIOLOGY; PREGNANCY; PRENATAL DEVELOPMENT; SPRAGUE DAWLEY RAT;

EID: 63349086770     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0004977     Document Type: Article
Times cited : (10)

References (55)
  • 1
    • 0034945150 scopus 로고    scopus 로고
    • Chemical neuroanatomy of the basal ganglia - Normal and in parkinson's disease
    • Hornykiewicz O (2001) Chemical neuroanatomy of the basal ganglia - Normal and in parkinson's disease. J Chem Neuroanat 22: 3-12.
    • (2001) J Chem Neuroanat , vol.22 , pp. 3-12
    • Hornykiewicz, O.1
  • 3
    • 0035098208 scopus 로고    scopus 로고
    • Higher cortical and lower subcortical metabolism in detoxified methamphetamine abusers
    • Volkow ND, Chang L, Wang GJ, Fowler JS, Franceschi D, et al. (2001) Higher cortical and lower subcortical metabolism in detoxified methamphetamine abusers. Am J Psychiatry 158: 383-389.
    • (2001) Am J Psychiatry , vol.158 , pp. 383-389
    • Volkow, N.D.1    Chang, L.2    Wang, G.J.3    Fowler, J.S.4    Franceschi, D.5
  • 6
    • 33847686707 scopus 로고    scopus 로고
    • Etiologic subtypes of attention-deficit/hyperactivity disorder: Brain imaging, molecular genetic and environmental factors and the dopamine hypothesis
    • Swanson JM, Kinsbourne M, Nigg J, Lanphear B, Stefanatos GA, et al. (2007) Etiologic subtypes of attention-deficit/hyperactivity disorder: brain imaging, molecular genetic and environmental factors and the dopamine hypothesis. Neuropsychol Rev 17: 39-59.
    • (2007) Neuropsychol Rev , vol.17 , pp. 39-59
    • Swanson, J.M.1    Kinsbourne, M.2    Nigg, J.3    Lanphear, B.4    Stefanatos, G.A.5
  • 7
    • 27644454004 scopus 로고    scopus 로고
    • Is there a common molecular pathway for addiction?
    • Nestler EJ (2005) Is there a common molecular pathway for addiction? Nat Neurosci 8: 1445-1449.
    • (2005) Nat Neurosci , vol.8 , pp. 1445-1449
    • Nestler, E.J.1
  • 9
    • 0032584085 scopus 로고    scopus 로고
    • Nurr1 is essential for the induction of the dopaminergic phenotype and the survival of ventral mesencephalic late dopaminergic precursor neurons
    • Saucedo-Cardenas O, Quintana-Hau JD, Le WD, Smidt MP, Cox JJ, et al. (1998) Nurr1 is essential for the induction of the dopaminergic phenotype and the survival of ventral mesencephalic late dopaminergic precursor neurons. Proc Natl Acad Sci U S A 95(7): 4013-8.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , Issue.7 , pp. 4013-4018
    • Saucedo-Cardenas, O.1    Quintana-Hau, J.D.2    Le, W.D.3    Smidt, M.P.4    Cox, J.J.5
  • 10
    • 0242708712 scopus 로고    scopus 로고
    • Involvement of Nurr1 in specifying the neurotransmitter identity of ventral midbrain dopaminergic neurons
    • Smits SM, Ponnio T, Conneely OM, Burbach JP, Smidt MP (2003) Involvement of Nurr1 in specifying the neurotransmitter identity of ventral midbrain dopaminergic neurons. Eur J Neurosci 18(7): 1731-8.
    • (2003) Eur J Neurosci , vol.18 , Issue.7 , pp. 1731-1738
    • Smits, S.M.1    Ponnio, T.2    Conneely, O.M.3    Burbach, J.P.4    Smidt, M.P.5
  • 11
    • 33845746199 scopus 로고    scopus 로고
    • How to make a mesodiencephalic dopaminergic neuron
    • Smidt MP, Burbach JP (2007) How to make a mesodiencephalic dopaminergic neuron. Nat Rev Neurosci 8: 21-32.
    • (2007) Nat Rev Neurosci , vol.8 , pp. 21-32
    • Smidt, M.P.1    Burbach, J.P.2
  • 14
    • 0028833793 scopus 로고
    • Control of neuronal diversity by the floor plate: Contact-mediated induction of midbrain dopaminergic neurons
    • Hynes M, Poulsen K, Tessier-Lavigne M, Rosenthal A (1995) Control of neuronal diversity by the floor plate: contact-mediated induction of midbrain dopaminergic neurons. Cell 80: 95-101.
    • (1995) Cell , vol.80 , pp. 95-101
    • Hynes, M.1    Poulsen, K.2    Tessier-Lavigne, M.3    Rosenthal, A.4
  • 15
    • 0032966607 scopus 로고    scopus 로고
    • Specification of dopaminergic and serotonergic neurons in the vertebrate CNS
    • Hynes M, Rosenthal A (1999) Specification of dopaminergic and serotonergic neurons in the vertebrate CNS. Curr Opin Neurobiol 9: 26-36.
    • (1999) Curr Opin Neurobiol , vol.9 , pp. 26-36
    • Hynes, M.1    Rosenthal, A.2
  • 16
    • 0742305015 scopus 로고    scopus 로고
    • Molecular mechanisms controlling the development of dopaminergic neurons
    • Lin JC, Rosenthal A (2003) Molecular mechanisms controlling the development of dopaminergic neurons. Semin Cell Dev Biol 14: 175-80.
    • (2003) Semin Cell Dev Biol , vol.14 , pp. 175-180
    • Lin, J.C.1    Rosenthal, A.2
  • 17
    • 0025001744 scopus 로고
    • Early appearance of tyrosine hydroxylase immunoreactive cells in the mesencephalon of mouse embryos
    • Di Porzio U, Zuddas A, Cosenza-Murphy DB, Barker JL (1990) Early appearance of tyrosine hydroxylase immunoreactive cells in the mesencephalon of mouse embryos. Int J Dev Neurosci 8: 523-32.
    • (1990) Int J Dev Neurosci , vol.8 , pp. 523-532
    • Di Porzio, U.1    Zuddas, A.2    Cosenza-Murphy, D.B.3    Barker, J.L.4
  • 18
    • 0028882094 scopus 로고
    • Basic fibroblast growth factor increases division and delays differentiation of dopamine precursors in vitro
    • Bouvier MM, Mytilineou C (1995) Basic fibroblast growth factor increases division and delays differentiation of dopamine precursors in vitro. J Neurosci 15: 7141-9.
    • (1995) J Neurosci , vol.15 , pp. 7141-7149
    • Bouvier, M.M.1    Mytilineou, C.2
  • 19
    • 4143103835 scopus 로고    scopus 로고
    • Enhancement of dopaminergic differentiation in proliferating midbrain neuroblasts by sonic hedgehog and ascorbic acid
    • Volpicelli F, Consales C, Caiazzo M, Colucci-D'Amato L, Perrone-Capano C, di Porzio U (2004) Enhancement of dopaminergic differentiation in proliferating midbrain neuroblasts by sonic hedgehog and ascorbic acid. Neural Plast 11: 45-57.
    • (2004) Neural Plast , vol.11 , pp. 45-57
    • Volpicelli, F.1    Consales, C.2    Caiazzo, M.3    Colucci-D'Amato, L.4    Perrone-Capano, C.5    di Porzio, U.6
  • 21
    • 0012339745 scopus 로고
    • In vitro maturation of mesencephalic dopaminergic neurons from mouse embryos is enhanced in presence of their striatal target cells
    • Prochiantz A, di Porzio U, Kato A, Berger B, Glowinski J (1979) In vitro maturation of mesencephalic dopaminergic neurons from mouse embryos is enhanced in presence of their striatal target cells. Proc Natl Acad Sci U S A 76: 5387-91.
    • (1979) Proc Natl Acad Sci U S A , vol.76 , pp. 5387-5391
    • Prochiantz, A.1    di Porzio, U.2    Kato, A.3    Berger, B.4    Glowinski, J.5
  • 22
    • 0019121308 scopus 로고
    • Effect of striatal cells on in vitro maturation of mesencephalic dopaminergic neurones grown in serum-free conditions
    • di Porzio U, Daguet MC, Glowinski J, Prochiantz A (1980) Effect of striatal cells on in vitro maturation of mesencephalic dopaminergic neurones grown in serum-free conditions. Nature 288: 370-3.
    • (1980) Nature , vol.288 , pp. 370-373
    • di Porzio, U.1    Daguet, M.C.2    Glowinski, J.3    Prochiantz, A.4
  • 25
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt KD, Tatusova T, Maglott DR (2007) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 35: D61-5.
    • (2007) Nucleic Acids Res , vol.35
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 27
    • 41349115432 scopus 로고    scopus 로고
    • The DAVID gene functional classification tool: A novel biological module-centric algorithm to functionally analyze large gene lists
    • Huang DW, Sherman BT, Tan Q, Collins JR, Alvord WG, et al. (2007) The DAVID gene functional classification tool: A novel biological module-centric algorithm to functionally analyze large gene lists. Genome Biol 8: 183.
    • (2007) Genome Biol , vol.8 , pp. 183
    • Huang, D.W.1    Sherman, B.T.2    Tan, Q.3    Collins, J.R.4    Alvord, W.G.5
  • 28
    • 29144535372 scopus 로고    scopus 로고
    • Evolving gene/ transcript definitions significantly alter the interpretation of GeneChip data
    • Dai M, Wang P, Boyd AD, Kostov G, Athey B, et al. (2005) Evolving gene/ transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Res 33: e175.
    • (2005) Nucleic Acids Res , vol.33
    • Dai, M.1    Wang, P.2    Boyd, A.D.3    Kostov, G.4    Athey, B.5
  • 29
    • 25444515422 scopus 로고    scopus 로고
    • Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements
    • Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z (2005) Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. BMC Bioinformatics 25: 107.
    • (2005) BMC Bioinformatics , vol.25 , pp. 107
    • Carter, S.L.1    Eklund, A.C.2    Mecham, B.H.3    Kohane, I.S.4    Szallasi, Z.5
  • 30
    • 84984996500 scopus 로고    scopus 로고
    • The Gene Ontology project in 2008
    • Gene Ontology Consortium
    • Gene Ontology Consortium (2008) The Gene Ontology project in 2008. Nucleic Acids Res 36: D440-4.
    • (2008) Nucleic Acids Res , vol.36
  • 32
    • 44849132693 scopus 로고    scopus 로고
    • Physiology, pathology and relatedness of human tissues from gene expression meta-analysis
    • Greco D, Somervuo P, Di Lieto A, Raitila T, Nitsch L, et al. (2008) Physiology, pathology and relatedness of human tissues from gene expression meta-analysis. PLoS ONE 3(4): e1880.
    • (2008) PLoS ONE , vol.3 , Issue.4
    • Greco, D.1    Somervuo, P.2    Di Lieto, A.3    Raitila, T.4    Nitsch, L.5
  • 34
    • 0029952149 scopus 로고    scopus 로고
    • Dopamine transporter gene expression in rat mesencephalic dopaminergic neurons is increased by direct interaction with target striatal cells in vitro
    • Perrone-Capano C, Tino A, Amadoro G, Pernas-Alonso R, di Porzio U (1996) Dopamine transporter gene expression in rat mesencephalic dopaminergic neurons is increased by direct interaction with target striatal cells in vitro. Brain Res Mol Brain Res 39: 160-6.
    • (1996) Brain Res Mol Brain Res , vol.39 , pp. 160-166
    • Perrone-Capano, C.1    Tino, A.2    Amadoro, G.3    Pernas-Alonso, R.4    di Porzio, U.5
  • 35
    • 0030827085 scopus 로고    scopus 로고
    • Egr transcription factors in the nervous system
    • Beckmann AM, Wilce PA (1997) Egr transcription factors in the nervous system. Neurochem Int 31: 477-510.
    • (1997) Neurochem Int , vol.31 , pp. 477-510
    • Beckmann, A.M.1    Wilce, P.A.2
  • 36
    • 34347203761 scopus 로고    scopus 로고
    • Bdnf gene is a downstream target of Nurr1 transcription factor in rat midbrain neurons in vitro
    • Volpicelli F, Caiazzo M, Greco D, Consales C, Leone L, et al. (2007) Bdnf gene is a downstream target of Nurr1 transcription factor in rat midbrain neurons in vitro. J Neurochem 102: 441-53.
    • (2007) J Neurochem , vol.102 , pp. 441-453
    • Volpicelli, F.1    Caiazzo, M.2    Greco, D.3    Consales, C.4    Leone, L.5
  • 37
    • 0029812609 scopus 로고    scopus 로고
    • Luteinizing hormone deficiency and female infertility in mice lacking the transcription factor NGFI-A (Egr-1)
    • Lee SL, Sadovsky Y, Swirnoff AH, Polish JA, Goda P, et al. (1996) Luteinizing hormone deficiency and female infertility in mice lacking the transcription factor NGFI-A (Egr-1). Science 273: 1219-1221.
    • (1996) Science , vol.273 , pp. 1219-1221
    • Lee, S.L.1    Sadovsky, Y.2    Swirnoff, A.H.3    Polish, J.A.4    Goda, P.5
  • 38
    • 0027484361 scopus 로고
    • Perinatal lethality and defects in hindbrain development in mice homozygous for a targeted mutation of the zinc finger gene Krox20
    • Swiatek PJ, Gridley T (1993) Perinatal lethality and defects in hindbrain development in mice homozygous for a targeted mutation of the zinc finger gene Krox20. Genes Dev 7: 2071-84.
    • (1993) Genes Dev , vol.7 , pp. 2071-2084
    • Swiatek, P.J.1    Gridley, T.2
  • 40
    • 0035126793 scopus 로고    scopus 로고
    • A requirement for the immediate early gene Zif268 in the expression of late LTP and long-term memories
    • Jones MW, Errington ML, French PJ, Fine A, Bliss TV, et al. (2001) A requirement for the immediate early gene Zif268 in the expression of late LTP and long-term memories. Nat Neurosci 4: 289-296.
    • (2001) Nat Neurosci , vol.4 , pp. 289-296
    • Jones, M.W.1    Errington, M.L.2    French, P.J.3    Fine, A.4    Bliss, T.V.5
  • 42
    • 33745493790 scopus 로고    scopus 로고
    • Differential actions of the proneural genes encoding Mash1 and neurogenins in Nurr1-induced dopamine neuron differentiation
    • Park CH, Kang JS, Kim JS, Chung S, Koh JY, et al. (2006) Differential actions of the proneural genes encoding Mash1 and neurogenins in Nurr1-induced dopamine neuron differentiation. J Cell Sci 119: 2310-20.
    • (2006) J Cell Sci , vol.119 , pp. 2310-2320
    • Park, C.H.1    Kang, J.S.2    Kim, J.S.3    Chung, S.4    Koh, J.Y.5
  • 43
    • 33947206784 scopus 로고    scopus 로고
    • Ngn2 and Nurr1 act in synergy to induce midbrain dopaminergic neurons from expanded neural stem and progenitor cells
    • Andersson EK, Irvin DK, Ahlsiö J, Parmar M (2007) Ngn2 and Nurr1 act in synergy to induce midbrain dopaminergic neurons from expanded neural stem and progenitor cells. Exp Cell Res 313: 1172-80.
    • (2007) Exp Cell Res , vol.313 , pp. 1172-1180
    • Andersson, E.K.1    Irvin, D.K.2    Ahlsiö, J.3    Parmar, M.4
  • 44
    • 33244496187 scopus 로고    scopus 로고
    • Neurogenin 2 is required for the development of ventral midbrain dopaminergic neurons
    • Kele J, Simplicio N, Ferri AL, Mira H, Guillemot F, et al. (2006) Neurogenin 2 is required for the development of ventral midbrain dopaminergic neurons. Development 133: 495-505.
    • (2006) Development , vol.133 , pp. 495-505
    • Kele, J.1    Simplicio, N.2    Ferri, A.L.3    Mira, H.4    Guillemot, F.5
  • 45
    • 0035830503 scopus 로고    scopus 로고
    • Neurogenin promotes neurogenesis and inhibits glial differentiation by independent mechanisms
    • Sun Y, Nadal-Vicens M, Misono S, Lin MZ, Zubiaga A, et al. (2001) Neurogenin promotes neurogenesis and inhibits glial differentiation by independent mechanisms. Cell 104: 365-76.
    • (2001) Cell , vol.104 , pp. 365-376
    • Sun, Y.1    Nadal-Vicens, M.2    Misono, S.3    Lin, M.Z.4    Zubiaga, A.5
  • 46
    • 12344295895 scopus 로고    scopus 로고
    • Tripodi M, Filosa A, Armentano M, Studer M The (2004) COUP-TF nuclear receptors regulate cell migration in the mammalian basal forebrain. Development 131: 6119-29.
    • Tripodi M, Filosa A, Armentano M, Studer M The (2004) COUP-TF nuclear receptors regulate cell migration in the mammalian basal forebrain. Development 131: 6119-29.
  • 47
    • 0028332021 scopus 로고
    • Target cells modulate dopamine transporter gene expression during brain development
    • Perrone-Capano C, Tino A, di Porzio U (1994) Target cells modulate dopamine transporter gene expression during brain development. Neuroreport 5: 1145-8.
    • (1994) Neuroreport , vol.5 , pp. 1145-1148
    • Perrone-Capano, C.1    Tino, A.2    di Porzio, U.3
  • 48
    • 0033485475 scopus 로고    scopus 로고
    • Multiplex semi-quantitative reverse transcriptase-polymerase chain reaction of low abundance neuronal mRNAs
    • Pernas-Alonso R, Morelli F, di Porzio U, Perrone-Capano C (1999) Multiplex semi-quantitative reverse transcriptase-polymerase chain reaction of low abundance neuronal mRNAs. Brain Res Brain Res Protoc 4: 395-406.
    • (1999) Brain Res Brain Res Protoc , vol.4 , pp. 395-406
    • Pernas-Alonso, R.1    Morelli, F.2    di Porzio, U.3    Perrone-Capano, C.4
  • 49
    • 0027211074 scopus 로고
    • Differential regulation of muscarinic receptor mRNA levels in neuroblastoma cells by chronic agonist exposure: A comparative polymerase chain reaction study
    • Steel MC, Buckley NJ (1993) Differential regulation of muscarinic receptor mRNA levels in neuroblastoma cells by chronic agonist exposure: a comparative polymerase chain reaction study. Mol Pharmacol 43: 694-701.
    • (1993) Mol Pharmacol , vol.43 , pp. 694-701
    • Steel, M.C.1    Buckley, N.J.2
  • 50
    • 1342288026 scopus 로고    scopus 로고
    • affy - analysis of Affymetrix GeneChip data at the probe level
    • Gautier L, Cope L, Bolstad BM, Irizarry RA (2004) affy - analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20: 307-315.
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 51
    • 63349094831 scopus 로고    scopus 로고
    • Parman C, Halling C (2008) affyQCReport: A Package to Generate QC Reports for Affymetrix Array Data.
    • Parman C, Halling C (2008) affyQCReport: A Package to Generate QC Reports for Affymetrix Array Data.
  • 52
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.D.4    Antonellis, K.J.5
  • 53
    • 33644872577 scopus 로고    scopus 로고
    • Limma: Linear models for microarray data
    • Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, eds, New York: Springer. pp
    • Smyth GK (2005) Limma: linear models for microarray data. In: Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, eds. Bioinformatics and Computational Biology Solutions using R and Bioconductor. New York: Springer. pp 397-420.
    • (2005) Bioinformatics and Computational Biology Solutions using R and Bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 54
    • 0001677717 scopus 로고
    • Controlling the false discovery rate - a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate - a practical and powerful approach to multiple testing. J R Stat Soc Ser B 57: 289-300.
    • (1995) J R Stat Soc Ser B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 55
    • 34250622540 scopus 로고    scopus 로고
    • Constructing Area-Proportional Venn and Euler Diagrams with Three Circles
    • Chow S, Rodgers P (2005) Constructing Area-Proportional Venn and Euler Diagrams with Three Circles. Euler Diagrams Workshop 2005.
    • (2005) Euler Diagrams Workshop
    • Chow, S.1    Rodgers, P.2


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